data_GG5
#
_chem_comp.id GG5
_chem_comp.name 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H10 F N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-03-21
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 239.248
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GG5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GG5 C1 C1 C 0 1 N N N N N N 23.076 19.601 28.572 1.009 3.615 -1.707 C1 GG5 1
GG5 N2 N2 N 0 1 N N N N N N 23.313 19.309 29.918 -0.332 3.753 -1.612 N2 GG5 2
GG5 C3 C3 C 0 1 N N N N N N 23.755 20.317 30.757 -1.065 2.630 -1.785 C3 GG5 3
GG5 C4 C4 C 0 1 N N N N N N 23.993 21.735 30.269 -0.522 1.382 -2.046 C4 GG5 4
GG5 C5 C5 C 0 1 N N N N N N 23.739 22.028 28.847 0.864 1.277 -2.136 C5 GG5 5
GG5 C6 C6 C 0 1 N N N N N N 23.270 20.915 28.002 1.649 2.414 -1.963 C6 GG5 6
GG5 C7 C7 C 0 1 N N N N N N 23.962 23.447 28.295 1.476 0.011 -2.404 C7 GG5 7
GG5 C8 C8 C 0 1 N N N N N N 23.663 24.612 29.050 1.743 -0.450 -3.670 C8 GG5 8
GG5 N9 N9 N 0 1 N N N N N N 23.962 25.677 28.292 2.318 -1.676 -3.507 N9 GG5 9
GG5 N11 N11 N 0 1 N N N N N N 24.435 25.331 27.093 2.446 -2.049 -2.222 N11 GG5 10
GG5 C12 C12 C 0 1 N N N N N N 24.461 23.986 27.032 1.930 -1.015 -1.548 C12 GG5 11
GG5 C13 C13 C 0 1 N N N N N N 24.993 23.149 25.680 1.885 -1.036 -0.112 C13 GG5 12
GG5 C14 C14 C 0 1 N N N N N N 24.569 23.257 24.297 0.773 -1.564 0.544 C14 GG5 13
GG5 C15 C15 C 0 1 N N N N N N 25.177 22.429 23.271 0.730 -1.585 1.938 C15 GG5 14
GG5 C16 C16 C 0 1 N N N N N N 26.226 21.480 23.639 1.800 -1.077 2.676 C16 GG5 15
GG5 C17 C17 C 0 1 N N N N N N 26.665 21.348 25.005 2.912 -0.549 2.020 C17 GG5 16
GG5 C18 C18 C 0 1 N N N N N N 26.058 22.171 26.014 2.955 -0.529 0.626 C18 GG5 17
GG5 F19 F19 F 0 1 N N N N N N 26.768 20.745 22.710 1.759 -1.096 4.014 F19 GG5 18
GG5 H1 H1 H 0 1 N N N N N N 22.731 18.807 27.927 1.578 4.528 -1.564 H1 GG5 19
GG5 H3 H3 H 0 1 N N N N N N 23.937 20.087 31.796 -2.139 2.763 -1.706 H3 GG5 20
GG5 H4 H4 H 0 1 N N N N N N 24.338 22.505 30.943 -1.169 0.521 -2.174 H4 GG5 21
GG5 H6 H6 H 0 1 N N N N N N 23.071 21.082 26.954 2.732 2.374 -2.026 H6 GG5 22
GG5 H8 H8 H 0 1 N N N N N N 23.266 24.636 30.054 1.581 -0.031 -4.653 H8 GG5 23
GG5 HN9 HN9 H 0 1 N N N N N N 23.844 26.624 28.591 2.645 -2.309 -4.225 HN9 GG5 24
GG5 H14 H14 H 0 1 N N N N N N 23.794 23.960 24.028 -0.068 -1.964 -0.017 H14 GG5 25
GG5 H15 H15 H 0 1 N N N N N N 24.856 22.514 22.243 -0.136 -1.995 2.449 H15 GG5 26
GG5 H17 H17 H 0 1 N N N N N N 27.439 20.641 25.266 3.744 -0.154 2.595 H17 GG5 27
GG5 H18 H18 H 0 1 N N N N N N 26.384 22.076 27.039 3.829 -0.114 0.129 H18 GG5 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GG5 C1 C6 DOUB N N 1
GG5 C1 N2 SING N N 2
GG5 C1 H1 SING N N 3
GG5 N2 C3 DOUB N N 4
GG5 C3 C4 SING N N 5
GG5 C3 H3 SING N N 6
GG5 C4 C5 DOUB N N 7
GG5 C4 H4 SING N N 8
GG5 C5 C6 SING N N 9
GG5 C5 C7 SING N N 10
GG5 C6 H6 SING N N 11
GG5 C7 C12 SING N N 12
GG5 C7 C8 DOUB N N 13
GG5 C8 N9 SING N N 14
GG5 C8 H8 SING N N 15
GG5 N9 N11 SING N N 16
GG5 N9 HN9 SING N N 17
GG5 N11 C12 DOUB N N 18
GG5 C12 C13 SING N N 19
GG5 C13 C14 DOUB N N 20
GG5 C13 C18 SING N N 21
GG5 C14 C15 SING N N 22
GG5 C14 H14 SING N N 23
GG5 C15 C16 DOUB N N 24
GG5 C15 H15 SING N N 25
GG5 C16 F19 SING N N 26
GG5 C16 C17 SING N N 27
GG5 C17 C18 DOUB N N 28
GG5 C17 H17 SING N N 29
GG5 C18 H18 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GG5 SMILES ACDLabs 10.04 Fc3ccc(c2nncc2c1ccncc1)cc3
GG5 SMILES_CANONICAL CACTVS 3.341 Fc1ccc(cc1)c2n[nH]cc2c3ccncc3
GG5 SMILES CACTVS 3.341 Fc1ccc(cc1)c2n[nH]cc2c3ccncc3
GG5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1c2c(c[nH]n2)c3ccncc3)F
GG5 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1c2c(c[nH]n2)c3ccncc3)F
GG5 InChI InChI 1.03 InChI=1S/C14H10FN3/c15-12-3-1-11(2-4-12)14-13(9-17-18-14)10-5-7-16-8-6-10/h1-9H,(H,17,18)
GG5 InChIKey InChI 1.03 BILJSHVAAVZERY-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GG5 "SYSTEMATIC NAME" ACDLabs 10.04 4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]pyridine
GG5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]pyridine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GG5 'Create component' 2007-03-21 RCSB
GG5 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id GG5
_pdbe_chem_comp_drugbank_details.drugbank_id DB07829
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id GG5
_pdbe_chem_comp_synonyms.name '4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id GG5
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07829
_pdbe_chem_comp_drugbank_classification.parent Phenylpyrazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Azoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylpyrazoles. These are compounds containing a phenylpyrazole skeleton, which consists of a pyrazole bound to a phenyl group.'
#
_pdbe_chem_comp_drugbank_targets.comp_id GG5
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07829
_pdbe_chem_comp_drugbank_targets.name 'Mitogen-activated protein kinase 14'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id Q16539
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
GG5 C1 C 9.476 0.333 1
GG5 N2 N 10.591 1.337 2
GG5 C3 C 10.280 2.804 3
GG5 C4 C 8.853 3.268 4
GG5 C5 C 7.738 2.264 5
GG5 C6 C 8.050 0.797 6
GG5 C7 C 6.312 2.728 7
GG5 C8 C 5.848 4.154 8
GG5 N9 N 4.348 4.154 9
GG5 N11 N 3.884 2.728 10
GG5 C12 C 5.098 1.846 11
GG5 C13 C 5.098 0.346 12
GG5 C14 C 3.799 -0.404 13
GG5 C15 C 3.799 -1.904 14
GG5 C16 C 5.098 -2.654 15
GG5 C17 C 6.397 -1.904 16
GG5 C18 C 6.397 -0.404 17
GG5 F19 F 5.098 -4.154 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
GG5 C1 C6 DOUBLE NONE 1
GG5 C1 N2 SINGLE NONE 2
GG5 N2 C3 DOUBLE NONE 3
GG5 C3 C4 SINGLE NONE 4
GG5 C4 C5 DOUBLE NONE 5
GG5 C5 C6 SINGLE NONE 6
GG5 C5 C7 SINGLE NONE 7
GG5 C7 C12 SINGLE NONE 8
GG5 C7 C8 DOUBLE NONE 9
GG5 C8 N9 SINGLE NONE 10
GG5 N9 N11 SINGLE NONE 11
GG5 N11 C12 DOUBLE NONE 12
GG5 C12 C13 SINGLE NONE 13
GG5 C13 C14 DOUBLE NONE 14
GG5 C13 C18 SINGLE NONE 15
GG5 C14 C15 SINGLE NONE 16
GG5 C15 C16 DOUBLE NONE 17
GG5 C16 F19 SINGLE NONE 18
GG5 C16 C17 SINGLE NONE 19
GG5 C17 C18 DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
GG5 MurckoScaffold S1 scaffold 'c1ccc(-c2n[nH]cc2-c2ccncc2)cc1' InChI=1S/C14H11N3/c1-2-4-12(5-3-1)14-13(10-16-17-14)11-6-8-15-9-7-11/h1-10H,(H,16,17) VOXXNSOMSGHJJR-UHFFFAOYSA-N
GG5 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
GG5 pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
GG5 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
GG5 C1 S1 1
GG5 N2 S1 1
GG5 C3 S1 1
GG5 C4 S1 1
GG5 C5 S1 1
GG5 C6 S1 1
GG5 C7 S1 1
GG5 C8 S1 1
GG5 N9 S1 1
GG5 N11 S1 1
GG5 C12 S1 1
GG5 C13 S1 1
GG5 C14 S1 1
GG5 C15 S1 1
GG5 C16 S1 1
GG5 C17 S1 1
GG5 C18 S1 1
GG5 C13 F1 1
GG5 C14 F1 1
GG5 C15 F1 1
GG5 C16 F1 1
GG5 C17 F1 1
GG5 C18 F1 1
GG5 C8 F2 1
GG5 C7 F2 1
GG5 C12 F2 1
GG5 N11 F2 1
GG5 N9 F2 1
GG5 C1 F3 1
GG5 C6 F3 1
GG5 C5 F3 1
GG5 C4 F3 1
GG5 C3 F3 1
GG5 N2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id GG5
_pdbe_chem_comp_rdkit_properties.exactmw 239.086
_pdbe_chem_comp_rdkit_properties.amw 239.253
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 117.436
_pdbe_chem_comp_rdkit_properties.tpsa 41.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.518
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.569
_pdbe_chem_comp_rdkit_properties.chi0v 8.720
_pdbe_chem_comp_rdkit_properties.chi1v 4.783
_pdbe_chem_comp_rdkit_properties.chi2v 2.104
_pdbe_chem_comp_rdkit_properties.chi3v 2.104
_pdbe_chem_comp_rdkit_properties.chi4v 1.345
_pdbe_chem_comp_rdkit_properties.chi0n 18.720
_pdbe_chem_comp_rdkit_properties.chi1n 9.731
_pdbe_chem_comp_rdkit_properties.chi2n 2.104
_pdbe_chem_comp_rdkit_properties.chi3n 2.104
_pdbe_chem_comp_rdkit_properties.chi4n 1.345
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.490
_pdbe_chem_comp_rdkit_properties.kappa1 4.315
_pdbe_chem_comp_rdkit_properties.kappa2 4.409
_pdbe_chem_comp_rdkit_properties.kappa3 1.883
_pdbe_chem_comp_rdkit_properties.Phi 1.057
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
GG5 UniChem DrugBank DB07829
GG5 UniChem ZINC ZINC000016052350
GG5 UniChem SureChEMBL SCHEMBL1554633
GG5 UniChem Nikkaji J2.738.126J
GG5 UniChem BindingDb 19429
GG5 UniChem 'Probes And Drugs' PD004973
GG5 UniChem PubChem 12106168
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
GG5 C1 -3.555 -1.337 -1.227 ETKDGv3 1
GG5 N2 -3.216 -2.391 -0.310 ETKDGv3 2
GG5 C3 -2.247 -2.260 0.549 ETKDGv3 3
GG5 C4 -1.465 -1.010 0.600 ETKDGv3 4
GG5 C5 -1.749 -0.013 -0.256 ETKDGv3 5
GG5 C6 -2.867 -0.189 -1.215 ETKDGv3 6
GG5 C7 -0.997 1.260 -0.222 ETKDGv3 7
GG5 C8 -1.541 2.466 -0.324 ETKDGv3 8
GG5 N9 -0.540 3.437 -0.069 ETKDGv3 9
GG5 N11 0.656 2.762 0.185 ETKDGv3 10
GG5 C12 0.427 1.491 0.097 ETKDGv3 11
GG5 C13 1.504 0.486 0.215 ETKDGv3 12
GG5 C14 1.512 -0.621 -0.551 ETKDGv3 13
GG5 C15 2.609 -1.604 -0.430 ETKDGv3 14
GG5 C16 3.612 -1.388 0.429 ETKDGv3 15
GG5 C17 3.625 -0.165 1.256 ETKDGv3 16
GG5 C18 2.630 0.726 1.152 ETKDGv3 17
GG5 F19 4.620 -2.288 0.539 ETKDGv3 18
GG5 H1 -4.368 -1.476 -1.927 ETKDGv3 19
GG5 H3 -2.017 -3.070 1.229 ETKDGv3 20
GG5 H4 -0.683 -0.908 1.342 ETKDGv3 21
GG5 H6 -3.123 0.599 -1.912 ETKDGv3 22
GG5 H8 -2.586 2.687 -0.494 ETKDGv3 23
GG5 HN9 -0.660 4.474 -0.046 ETKDGv3 24
GG5 H14 0.732 -0.802 -1.279 ETKDGv3 25
GG5 H15 2.599 -2.496 -1.042 ETKDGv3 26
GG5 H17 4.441 0.011 1.945 ETKDGv3 27
GG5 H18 2.648 1.618 1.765 ETKDGv3 28
#