data_G4N
#
_chem_comp.id G4N
_chem_comp.name
'~{N}-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]-3-(propanoylamino)benzamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C36 H35 N5 O3'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-08-28
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 585.695
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G4N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6HHI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G4N CAQ C1 C 0 1 Y N N N N N -5.924 1.795 -16.254 5.458 -2.315 -2.152 CAQ G4N 1
G4N CBB C2 C 0 1 Y N N N N N -7.260 2.179 -16.255 4.599 -3.111 -2.882 CBB G4N 2
G4N CBD C3 C 0 1 Y N N N N N -8.043 1.993 -15.123 3.272 -3.225 -2.507 CBD G4N 3
G4N CBE C4 C 0 1 Y N N N N N -7.494 1.421 -13.982 2.798 -2.543 -1.401 CBE G4N 4
G4N CAZ C5 C 0 1 Y N N N N N -6.163 1.031 -13.986 3.648 -1.745 -0.663 CAZ G4N 5
G4N CBG C6 C 0 1 Y N N N N N -5.367 1.230 -15.116 4.986 -1.625 -1.035 CBG G4N 6
G4N CBH C7 C 0 1 Y N N N N N -4.023 0.850 -15.124 5.905 -0.774 -0.244 CBH G4N 7
G4N CBI C8 C 0 1 Y N N N N N -3.603 0.013 -16.150 7.133 -1.273 0.184 CBI G4N 8
G4N CBQ C9 C 0 1 Y N N N N N -2.278 -0.394 -16.192 7.960 -0.429 0.926 CBQ G4N 9
G4N CBR C10 C 0 1 N N N N N N -1.816 -1.236 -17.201 9.270 -0.864 1.419 CBR G4N 10
G4N OBK O1 O 0 1 N N N N N N -2.569 -1.645 -18.086 9.671 -1.991 1.188 OBK G4N 11
G4N NBN N1 N 0 1 N N N N N N -0.469 -1.622 -17.208 10.025 -0.004 2.131 NBN G4N 12
G4N CBO C11 C 0 1 N N N N N N 0.364 -1.201 -16.273 9.611 1.265 2.410 CBO G4N 13
G4N CBJ C12 C 0 1 N N N N N N -0.073 -0.362 -15.257 8.427 1.746 1.997 CBJ G4N 14
G4N CBP C13 C 0 1 Y N N N N N -1.400 0.046 -15.213 7.532 0.890 1.217 CBP G4N 15
G4N NBL N2 N 0 1 Y N N N N N -1.823 0.855 -14.231 6.352 1.324 0.789 NBL G4N 16
G4N CBM C14 C 0 1 Y N N N N N -3.097 1.273 -14.153 5.548 0.551 0.078 CBM G4N 17
G4N CBF C15 C 0 1 Y N N N N N -3.431 2.128 -13.096 4.246 1.084 -0.383 CBF G4N 18
G4N CBA C16 C 0 1 Y N N N N N -4.004 3.371 -13.360 3.723 0.689 -1.613 CBA G4N 19
G4N CAR C17 C 0 1 Y N N N N N -4.346 4.229 -12.327 2.509 1.190 -2.037 CAR G4N 20
G4N CAX C18 C 0 1 Y N N N N N -3.173 1.765 -11.777 3.534 1.980 0.416 CAX G4N 21
G4N CAY C19 C 0 1 Y N N N N N -3.509 2.627 -10.738 2.321 2.474 -0.019 CAY G4N 22
G4N CBC C20 C 0 1 Y N N N N N -4.089 3.861 -11.015 1.811 2.083 -1.243 CBC G4N 23
G4N CAW C21 C 0 1 N N N N N N -4.442 4.738 -9.996 0.486 2.626 -1.712 CAW G4N 24
G4N NAV N3 N 0 1 N N N N N N -3.343 5.043 -9.075 -0.596 1.747 -1.249 NAV G4N 25
G4N CAU C22 C 0 1 N N N N N N -2.380 5.942 -9.729 -0.702 1.769 0.215 CAU G4N 26
G4N CAT C23 C 0 1 N N N N N N -1.291 6.386 -8.756 -1.736 0.737 0.669 CAT G4N 27
G4N CAO C24 C 0 1 N N N N N N -3.957 5.705 -7.917 -1.873 2.107 -1.880 CAO G4N 28
G4N CAP C25 C 0 1 N N N N N N -2.919 6.112 -6.900 -2.942 1.084 -1.488 CAP G4N 29
G4N CAS C26 C 0 1 N N N N N N -1.964 7.078 -7.570 -3.091 1.066 0.035 CAS G4N 30
G4N NAN N4 N 0 1 N N N N N N -0.978 7.589 -6.603 -4.072 0.048 0.420 NAN G4N 31
G4N CAM C27 C 0 1 N N N N N N -0.100 6.838 -5.920 -5.385 0.348 0.431 CAM G4N 32
G4N OAL O2 O 0 1 N N N N N N 0.010 5.615 -6.005 -5.757 1.464 0.122 OAL G4N 33
G4N CAK C28 C 0 1 Y N N N N N 0.718 7.575 -5.073 -6.375 -0.679 0.819 CAK G4N 34
G4N CAJ C29 C 0 1 Y N N N N N 0.561 8.954 -5.008 -7.735 -0.371 0.831 CAJ G4N 35
G4N CAC C30 C 0 1 Y N N N N N 1.688 6.950 -4.299 -5.952 -1.963 1.168 CAC G4N 36
G4N CAD C31 C 0 1 Y N N N N N 2.494 7.710 -3.459 -6.878 -2.921 1.529 CAD G4N 37
G4N CAH C32 C 0 1 Y N N N N N 2.337 9.089 -3.394 -8.226 -2.614 1.546 CAH G4N 38
G4N CAI C33 C 0 1 Y N N N N N 1.365 9.710 -4.167 -8.658 -1.340 1.195 CAI G4N 39
G4N NAB N5 N 0 1 N N N N N N 1.200 11.029 -4.129 -10.024 -1.036 1.210 NAB G4N 40
G4N CAA C34 C 0 1 N N N N N N 1.804 11.712 -5.110 -10.530 -0.165 0.315 CAA G4N 41
G4N OAE O3 O 0 1 N N N N N N 2.482 11.182 -5.983 -9.822 0.282 -0.563 OAE G4N 42
G4N CAF C35 C 0 1 N N N N N N 1.623 13.224 -5.098 -11.974 0.254 0.404 CAF G4N 43
G4N CAG C36 C 0 1 N N N N N N 2.331 13.948 -6.242 -12.290 1.240 -0.722 CAG G4N 44
G4N H1 H1 H 0 1 N N N N N N -5.320 1.936 -17.138 6.495 -2.229 -2.442 H1 G4N 45
G4N H2 H2 H 0 1 N N N N N N -7.691 2.624 -17.140 4.963 -3.645 -3.747 H2 G4N 46
G4N H3 H3 H 0 1 N N N N N N -9.080 2.293 -15.130 2.603 -3.849 -3.082 H3 G4N 47
G4N H4 H4 H 0 1 N N N N N N -8.099 1.281 -13.099 1.761 -2.636 -1.114 H4 G4N 48
G4N H5 H5 H 0 1 N N N N N N -5.738 0.569 -13.107 3.277 -1.212 0.200 H5 G4N 49
G4N H6 H6 H 0 1 N N N N N N -4.300 -0.317 -16.906 7.436 -2.282 -0.051 H6 G4N 50
G4N H7 H7 H 0 1 N N N N N N 1.398 -1.513 -16.299 10.261 1.908 2.985 H7 G4N 51
G4N H8 H8 H 0 1 N N N N N N 0.620 -0.026 -14.500 8.136 2.758 2.240 H8 G4N 52
G4N H10 H10 H 0 1 N N N N N N -4.184 3.669 -14.382 4.267 -0.007 -2.234 H10 G4N 53
G4N H11 H11 H 0 1 N N N N N N -4.811 5.180 -12.543 2.102 0.884 -2.990 H11 G4N 54
G4N H12 H12 H 0 1 N N N N N N -2.711 0.813 -11.560 3.932 2.286 1.372 H12 G4N 55
G4N H13 H13 H 0 1 N N N N N N -3.319 2.338 -9.715 1.770 3.167 0.599 H13 G4N 56
G4N H14 H14 H 0 1 N N N N N N -4.785 5.679 -10.451 0.340 3.627 -1.306 H14 G4N 57
G4N H15 H15 H 0 1 N N N N N N -5.264 4.288 -9.419 0.476 2.671 -2.802 H15 G4N 58
G4N H17 H17 H 0 1 N N N N N N -1.913 5.414 -10.574 0.267 1.529 0.653 H17 G4N 59
G4N H18 H18 H 0 1 N N N N N N -2.913 6.830 -10.101 -1.012 2.762 0.542 H18 G4N 60
G4N H19 H19 H 0 1 N N N N N N -0.726 5.510 -8.405 -1.420 -0.258 0.354 H19 G4N 61
G4N H20 H20 H 0 1 N N N N N N -0.607 7.087 -9.257 -1.826 0.765 1.755 H20 G4N 62
G4N H21 H21 H 0 1 N N N N N N -4.493 6.602 -8.260 -2.177 3.098 -1.543 H21 G4N 63
G4N H22 H22 H 0 1 N N N N N N -4.668 5.012 -7.444 -1.754 2.112 -2.963 H22 G4N 64
G4N H23 H23 H 0 1 N N N N N N -3.406 6.602 -6.044 -3.893 1.360 -1.944 H23 G4N 65
G4N H24 H24 H 0 1 N N N N N N -2.370 5.225 -6.551 -2.645 0.095 -1.837 H24 G4N 66
G4N H25 H25 H 0 1 N N N N N N -2.549 7.925 -7.958 -3.426 2.045 0.380 H25 G4N 67
G4N H26 H26 H 0 1 N N N N N N -0.961 8.576 -6.442 -3.775 -0.842 0.666 H26 G4N 68
G4N H27 H27 H 0 1 N N N N N N -0.190 9.439 -5.614 -8.069 0.619 0.558 H27 G4N 69
G4N H28 H28 H 0 1 N N N N N N 1.815 5.879 -4.350 -4.900 -2.207 1.155 H28 G4N 70
G4N H29 H29 H 0 1 N N N N N N 3.246 7.226 -2.854 -6.548 -3.913 1.799 H29 G4N 71
G4N H30 H30 H 0 1 N N N N N N 2.969 9.676 -2.744 -8.946 -3.367 1.829 H30 G4N 72
G4N H31 H31 H 0 1 N N N N N N 0.662 11.480 -3.417 -10.606 -1.452 1.865 H31 G4N 73
G4N H32 H32 H 0 1 N N N N N N 2.018 13.611 -4.147 -12.614 -0.624 0.308 H32 G4N 74
G4N H33 H33 H 0 1 N N N N N N 0.547 13.443 -5.164 -12.155 0.731 1.367 H33 G4N 75
G4N H34 H34 H 0 1 N N N N N N 2.150 15.030 -6.159 -11.651 2.118 -0.626 H34 G4N 76
G4N H35 H35 H 0 1 N N N N N N 3.412 13.752 -6.187 -12.109 0.763 -1.685 H35 G4N 77
G4N H36 H36 H 0 1 N N N N N N 1.941 13.584 -7.204 -13.335 1.543 -0.657 H36 G4N 78
G4N H37 H37 H 0 1 N N N N N N -0.133 -2.225 -17.932 10.891 -0.297 2.455 H37 G4N 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G4N OBK CBR DOUB N N 1
G4N NBN CBR SING N N 2
G4N NBN CBO SING N N 3
G4N CBR CBQ SING N N 4
G4N CBO CBJ DOUB N N 5
G4N CBB CAQ DOUB Y N 6
G4N CBB CBD SING Y N 7
G4N CAQ CBG SING Y N 8
G4N CBQ CBI DOUB Y N 9
G4N CBQ CBP SING Y N 10
G4N CBI CBH SING Y N 11
G4N CBJ CBP SING N N 12
G4N CBP NBL DOUB Y N 13
G4N CBH CBG SING N N 14
G4N CBH CBM DOUB Y N 15
G4N CBD CBE DOUB Y N 16
G4N CBG CAZ DOUB Y N 17
G4N NBL CBM SING Y N 18
G4N CBM CBF SING N N 19
G4N CAZ CBE SING Y N 20
G4N CBA CBF DOUB Y N 21
G4N CBA CAR SING Y N 22
G4N CBF CAX SING Y N 23
G4N CAR CBC DOUB Y N 24
G4N CAX CAY DOUB Y N 25
G4N CBC CAY SING Y N 26
G4N CBC CAW SING N N 27
G4N CAW NAV SING N N 28
G4N CAU NAV SING N N 29
G4N CAU CAT SING N N 30
G4N NAV CAO SING N N 31
G4N CAT CAS SING N N 32
G4N CAO CAP SING N N 33
G4N CAS CAP SING N N 34
G4N CAS NAN SING N N 35
G4N NAN CAM SING N N 36
G4N CAG CAF SING N N 37
G4N OAL CAM DOUB N N 38
G4N OAE CAA DOUB N N 39
G4N CAM CAK SING N N 40
G4N CAA CAF SING N N 41
G4N CAA NAB SING N N 42
G4N CAK CAJ DOUB Y N 43
G4N CAK CAC SING Y N 44
G4N CAJ CAI SING Y N 45
G4N CAC CAD DOUB Y N 46
G4N CAI NAB SING N N 47
G4N CAI CAH DOUB Y N 48
G4N CAD CAH SING Y N 49
G4N CAQ H1 SING N N 50
G4N CBB H2 SING N N 51
G4N CBD H3 SING N N 52
G4N CBE H4 SING N N 53
G4N CAZ H5 SING N N 54
G4N CBI H6 SING N N 55
G4N CBO H7 SING N N 56
G4N CBJ H8 SING N N 57
G4N CBA H10 SING N N 58
G4N CAR H11 SING N N 59
G4N CAX H12 SING N N 60
G4N CAY H13 SING N N 61
G4N CAW H14 SING N N 62
G4N CAW H15 SING N N 63
G4N CAU H17 SING N N 64
G4N CAU H18 SING N N 65
G4N CAT H19 SING N N 66
G4N CAT H20 SING N N 67
G4N CAO H21 SING N N 68
G4N CAO H22 SING N N 69
G4N CAP H23 SING N N 70
G4N CAP H24 SING N N 71
G4N CAS H25 SING N N 72
G4N NAN H26 SING N N 73
G4N CAJ H27 SING N N 74
G4N CAC H28 SING N N 75
G4N CAD H29 SING N N 76
G4N CAH H30 SING N N 77
G4N NAB H31 SING N N 78
G4N CAF H32 SING N N 79
G4N CAF H33 SING N N 80
G4N CAG H34 SING N N 81
G4N CAG H35 SING N N 82
G4N CAG H36 SING N N 83
G4N NBN H37 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G4N InChI InChI 1.03 'InChI=1S/C36H35N5O3/c1-2-33(42)38-29-10-6-9-27(21-29)35(43)39-28-16-19-41(20-17-28)23-24-11-13-26(14-12-24)34-30(25-7-4-3-5-8-25)22-31-32(40-34)15-18-37-36(31)44/h3-15,18,21-22,28H,2,16-17,19-20,23H2,1H3,(H,37,44)(H,38,42)(H,39,43)'
G4N InChIKey InChI 1.03 IWMRYSJODDURNY-UHFFFAOYSA-N
G4N SMILES_CANONICAL CACTVS 3.385 'CCC(=O)Nc1cccc(c1)C(=O)NC2CCN(CC2)Cc3ccc(cc3)c4nc5C=CNC(=O)c5cc4c6ccccc6'
G4N SMILES CACTVS 3.385 'CCC(=O)Nc1cccc(c1)C(=O)NC2CCN(CC2)Cc3ccc(cc3)c4nc5C=CNC(=O)c5cc4c6ccccc6'
G4N SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.6 'CCC(=O)Nc1cccc(c1)C(=O)NC2CCN(CC2)Cc3ccc(cc3)c4c(cc5c(n4)C=CNC5=O)c6ccccc6'
G4N SMILES 'OpenEye OEToolkits' 2.0.6 'CCC(=O)Nc1cccc(c1)C(=O)NC2CCN(CC2)Cc3ccc(cc3)c4c(cc5c(n4)C=CNC5=O)c6ccccc6'
#
_pdbx_chem_comp_identifier.comp_id G4N
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
'~{N}-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]-3-(propanoylamino)benzamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G4N 'Create component' 2018-08-28 EBI
G4N 'Initial release' 2019-02-20 RCSB
G4N 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id G4N
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom CAG
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G4N CAQ C 8.196 -8.250 1
G4N CBB C 6.897 -9.000 2
G4N CBD C 6.897 -10.500 3
G4N CBE C 8.196 -11.250 4
G4N CAZ C 9.495 -10.500 5
G4N CBG C 9.495 -9.000 6
G4N CBH C 10.794 -8.250 7
G4N CBI C 12.093 -9.000 8
G4N CBQ C 13.392 -8.250 9
G4N CBR C 14.733 -9.052 10
G4N OBK O 14.716 -10.552 11
G4N NBN N 16.092 -8.281 12
G4N CBO C 16.092 -6.719 13
G4N CBJ C 14.733 -5.948 14
G4N CBP C 13.392 -6.750 15
G4N NBL N 12.093 -6.000 16
G4N CBM C 10.794 -6.750 17
G4N CBF C 9.495 -6.000 18
G4N CBA C 8.196 -6.750 19
G4N CAR C 6.897 -6.000 20
G4N CAX C 9.495 -4.500 21
G4N CAY C 8.196 -3.750 22
G4N CBC C 6.897 -4.500 23
G4N CAW C 5.598 -3.750 24
G4N NAV N 5.598 -2.250 25
G4N CAU C 6.897 -1.500 26
G4N CAT C 6.897 0.000 27
G4N CAO C 4.299 -1.500 28
G4N CAP C 4.299 0.000 29
G4N CAS C 5.598 0.750 30
G4N NAN N 5.598 2.250 31
G4N CAM C 4.299 3.000 32
G4N OAL O 3.000 2.250 33
G4N CAK C 4.299 4.500 34
G4N CAJ C 5.598 5.250 35
G4N CAC C 3.000 5.250 36
G4N CAD C 3.000 6.750 37
G4N CAH C 4.299 7.500 38
G4N CAI C 5.598 6.750 39
G4N NAB N 6.897 7.500 40
G4N CAA C 6.897 9.000 41
G4N OAE O 5.598 9.750 42
G4N CAF C 8.196 9.750 43
G4N CAG C 8.196 11.250 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G4N OBK CBR DOUBLE NONE 1
G4N NBN CBR SINGLE NONE 2
G4N NBN CBO SINGLE NONE 3
G4N CBR CBQ SINGLE NONE 4
G4N CBO CBJ DOUBLE NONE 5
G4N CBB CAQ DOUBLE NONE 6
G4N CBB CBD SINGLE NONE 7
G4N CAQ CBG SINGLE NONE 8
G4N CBQ CBI DOUBLE NONE 9
G4N CBQ CBP SINGLE NONE 10
G4N CBI CBH SINGLE NONE 11
G4N CBJ CBP SINGLE NONE 12
G4N CBP NBL DOUBLE NONE 13
G4N CBH CBG SINGLE NONE 14
G4N CBH CBM DOUBLE NONE 15
G4N CBD CBE DOUBLE NONE 16
G4N CBG CAZ DOUBLE NONE 17
G4N NBL CBM SINGLE NONE 18
G4N CBM CBF SINGLE NONE 19
G4N CAZ CBE SINGLE NONE 20
G4N CBA CBF DOUBLE NONE 21
G4N CBA CAR SINGLE NONE 22
G4N CBF CAX SINGLE NONE 23
G4N CAR CBC DOUBLE NONE 24
G4N CAX CAY DOUBLE NONE 25
G4N CBC CAY SINGLE NONE 26
G4N CBC CAW SINGLE NONE 27
G4N CAW NAV SINGLE NONE 28
G4N CAU NAV SINGLE NONE 29
G4N CAU CAT SINGLE NONE 30
G4N NAV CAO SINGLE NONE 31
G4N CAT CAS SINGLE NONE 32
G4N CAO CAP SINGLE NONE 33
G4N CAS CAP SINGLE NONE 34
G4N CAS NAN SINGLE NONE 35
G4N NAN CAM SINGLE NONE 36
G4N CAG CAF SINGLE NONE 37
G4N OAL CAM DOUBLE NONE 38
G4N OAE CAA DOUBLE NONE 39
G4N CAM CAK SINGLE NONE 40
G4N CAA CAF SINGLE NONE 41
G4N CAA NAB SINGLE NONE 42
G4N CAK CAJ DOUBLE NONE 43
G4N CAK CAC SINGLE NONE 44
G4N CAJ CAI SINGLE NONE 45
G4N CAC CAD DOUBLE NONE 46
G4N CAI NAB SINGLE NONE 47
G4N CAI CAH DOUBLE NONE 48
G4N CAD CAH SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G4N MurckoScaffold S1 scaffold 'O=C(NC1CCN(Cc2ccc(-c3nc4cc[nH]c(=O)c4cc3-c3ccccc3)cc2)CC1)c1ccccc1' InChI=1S/C33H30N4O2/c38-32(26-9-5-2-6-10-26)35-27-16-19-37(20-17-27)22-23-11-13-25(14-12-23)31-28(24-7-3-1-4-8-24)21-29-30(36-31)15-18-34-33(29)39/h1-15,18,21,27H,16-17,19-20,22H2,(H,34,39)(H,35,38) GUOIHLSTPYRNCX-UHFFFAOYSA-N
G4N amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G4N phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G4N pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G4N CAQ S1 1
G4N CBB S1 1
G4N CBD S1 1
G4N CBE S1 1
G4N CAZ S1 1
G4N CBG S1 1
G4N CBH S1 1
G4N CBI S1 1
G4N CBQ S1 1
G4N CBR S1 1
G4N OBK S1 1
G4N NBN S1 1
G4N CBO S1 1
G4N CBJ S1 1
G4N CBP S1 1
G4N NBL S1 1
G4N CBM S1 1
G4N CBF S1 1
G4N CBA S1 1
G4N CAR S1 1
G4N CAX S1 1
G4N CAY S1 1
G4N CBC S1 1
G4N CAW S1 1
G4N NAV S1 1
G4N CAU S1 1
G4N CAT S1 1
G4N CAO S1 1
G4N CAP S1 1
G4N CAS S1 1
G4N NAN S1 1
G4N CAM S1 1
G4N OAL S1 1
G4N CAK S1 1
G4N CAJ S1 1
G4N CAC S1 1
G4N CAD S1 1
G4N CAH S1 1
G4N CAI S1 1
G4N NAN F1 1
G4N CAM F1 1
G4N OAL F1 1
G4N CAK F1 1
G4N NAB F1 2
G4N CAA F1 2
G4N OAE F1 2
G4N CAF F1 2
G4N CAQ F2 1
G4N CBB F2 1
G4N CBD F2 1
G4N CBE F2 1
G4N CAZ F2 1
G4N CBG F2 1
G4N CBF F2 2
G4N CBA F2 2
G4N CAR F2 2
G4N CBC F2 2
G4N CAY F2 2
G4N CAX F2 2
G4N CAK F2 3
G4N CAJ F2 3
G4N CAI F2 3
G4N CAH F2 3
G4N CAD F2 3
G4N CAC F2 3
G4N CBR F3 1
G4N CBQ F3 1
G4N CBP F3 1
G4N CBJ F3 1
G4N CBO F3 1
G4N NBN F3 1
G4N CBP F3 2
G4N CBQ F3 2
G4N CBI F3 2
G4N CBH F3 2
G4N CBM F3 2
G4N NBL F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id G4N
_pdbe_chem_comp_rdkit_properties.exactmw 585.274
_pdbe_chem_comp_rdkit_properties.amw 585.708
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 305.059
_pdbe_chem_comp_rdkit_properties.tpsa 107.190
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.221
_pdbe_chem_comp_rdkit_properties.CrippenMR 168.266
_pdbe_chem_comp_rdkit_properties.chi0v 21.461
_pdbe_chem_comp_rdkit_properties.chi1v 11.822
_pdbe_chem_comp_rdkit_properties.chi2v 5.260
_pdbe_chem_comp_rdkit_properties.chi3v 5.260
_pdbe_chem_comp_rdkit_properties.chi4v 3.408
_pdbe_chem_comp_rdkit_properties.chi0n 56.461
_pdbe_chem_comp_rdkit_properties.chi1n 29.164
_pdbe_chem_comp_rdkit_properties.chi2n 5.260
_pdbe_chem_comp_rdkit_properties.chi3n 5.260
_pdbe_chem_comp_rdkit_properties.chi4n 3.408
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.080
_pdbe_chem_comp_rdkit_properties.kappa1 8.985
_pdbe_chem_comp_rdkit_properties.kappa2 13.056
_pdbe_chem_comp_rdkit_properties.kappa3 6.606
_pdbe_chem_comp_rdkit_properties.Phi 2.666
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G4N UniChem ChEMBL CHEMBL5953513
G4N UniChem SureChEMBL SCHEMBL21654994
G4N UniChem PubChem 137349392
G4N UniChem BindingDb 431878
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G4N CAQ -6.999 -1.549 1.381 ETKDGv3 1
G4N CBB -7.037 -2.845 1.715 ETKDGv3 2
G4N CBD -7.491 -3.849 0.732 ETKDGv3 3
G4N CBE -7.870 -3.464 -0.493 ETKDGv3 4
G4N CAZ -7.828 -2.035 -0.866 ETKDGv3 5
G4N CBG -7.400 -1.114 0.017 ETKDGv3 6
G4N CBH -7.352 0.321 -0.356 ETKDGv3 7
G4N CBI -8.587 0.954 -0.882 ETKDGv3 8
G4N CBQ -8.609 2.267 -1.151 ETKDGv3 9
G4N CBR -9.800 2.965 -1.664 ETKDGv3 10
G4N OBK -10.874 2.344 -1.889 ETKDGv3 11
G4N NBN -9.724 4.375 -1.909 ETKDGv3 12
G4N CBO -8.516 5.115 -1.664 ETKDGv3 13
G4N CBJ -7.412 4.517 -1.198 ETKDGv3 14
G4N CBP -7.394 3.071 -0.918 ETKDGv3 15
G4N NBL -6.314 2.502 -0.470 ETKDGv3 16
G4N CBM -6.245 1.091 -0.184 ETKDGv3 17
G4N CBF -4.944 0.543 0.263 ETKDGv3 18
G4N CBA -4.255 1.156 1.240 ETKDGv3 19
G4N CAR -2.954 0.620 1.688 ETKDGv3 20
G4N CAX -4.357 -0.653 -0.395 ETKDGv3 21
G4N CAY -3.180 -1.140 0.013 ETKDGv3 22
G4N CBC -2.441 -0.483 1.117 ETKDGv3 23
G4N CAW -1.100 -1.016 1.552 ETKDGv3 24
G4N NAV -0.006 -0.124 1.113 ETKDGv3 25
G4N CAU 1.279 -0.470 1.778 ETKDGv3 26
G4N CAT 2.170 -1.370 0.910 ETKDGv3 27
G4N CAO 0.081 -0.063 -0.371 ETKDGv3 28
G4N CAP 1.474 0.361 -0.847 ETKDGv3 29
G4N CAS 2.531 -0.689 -0.434 ETKDGv3 30
G4N NAN 3.865 -0.080 -0.362 ETKDGv3 31
G4N CAM 5.064 -0.873 -0.341 ETKDGv3 32
G4N OAL 4.995 -2.113 -0.565 ETKDGv3 33
G4N CAK 6.383 -0.252 -0.069 ETKDGv3 34
G4N CAJ 7.517 -0.843 -0.492 ETKDGv3 35
G4N CAC 6.477 1.020 0.694 ETKDGv3 36
G4N CAD 7.668 1.582 0.927 ETKDGv3 37
G4N CAH 8.902 0.940 0.437 ETKDGv3 38
G4N CAI 8.842 -0.233 -0.220 ETKDGv3 39
G4N NAB 10.023 -0.871 -0.733 ETKDGv3 40
G4N CAA 11.298 -0.869 -0.070 ETKDGv3 41
G4N OAE 11.405 -0.460 1.117 ETKDGv3 42
G4N CAF 12.517 -1.361 -0.791 ETKDGv3 43
G4N CAG 13.056 -0.285 -1.726 ETKDGv3 44
G4N H1 -6.678 -0.819 2.113 ETKDGv3 45
G4N H2 -6.743 -3.159 2.708 ETKDGv3 46
G4N H3 -7.520 -4.896 1.006 ETKDGv3 47
G4N H4 -8.205 -4.198 -1.213 ETKDGv3 48
G4N H5 -8.128 -1.745 -1.866 ETKDGv3 49
G4N H6 -9.474 0.350 -1.031 ETKDGv3 50
G4N H7 -8.499 6.179 -1.861 ETKDGv3 51
G4N H8 -6.519 5.106 -1.025 ETKDGv3 52
G4N H10 -4.652 2.040 1.725 ETKDGv3 53
G4N H11 -2.420 1.128 2.482 ETKDGv3 54
G4N H12 -4.874 -1.131 -1.218 ETKDGv3 55
G4N H13 -2.763 -2.010 -0.478 ETKDGv3 56
G4N H14 -0.942 -2.049 1.167 ETKDGv3 57
G4N H15 -1.118 -1.086 2.663 ETKDGv3 58
G4N H17 1.828 0.472 1.996 ETKDGv3 59
G4N H18 1.119 -0.961 2.764 ETKDGv3 60
G4N H19 3.086 -1.638 1.480 ETKDGv3 61
G4N H20 1.624 -2.317 0.708 ETKDGv3 62
G4N H21 -0.163 -1.048 -0.833 ETKDGv3 63
G4N H22 -0.659 0.677 -0.745 ETKDGv3 64
G4N H23 1.474 0.477 -1.953 ETKDGv3 65
G4N H24 1.703 1.355 -0.402 ETKDGv3 66
G4N H25 2.543 -1.473 -1.224 ETKDGv3 67
G4N H26 3.957 0.959 -0.414 ETKDGv3 68
G4N H27 7.480 -1.772 -1.048 ETKDGv3 69
G4N H28 5.589 1.496 1.089 ETKDGv3 70
G4N H29 7.731 2.509 1.482 ETKDGv3 71
G4N H30 9.846 1.443 0.597 ETKDGv3 72
G4N H31 9.926 -1.449 -1.599 ETKDGv3 73
G4N H32 12.262 -2.269 -1.379 ETKDGv3 74
G4N H33 13.305 -1.638 -0.057 ETKDGv3 75
G4N H34 13.960 -0.664 -2.247 ETKDGv3 76
G4N H35 13.333 0.624 -1.149 ETKDGv3 77
G4N H36 12.293 -0.017 -2.488 ETKDGv3 78
G4N H37 -10.562 4.881 -2.273 ETKDGv3 79
#