data_G3C
#
_chem_comp.id G3C
_chem_comp.name (1R)-6-chloranyl-1-(4-hydroxyphenyl)-2,3,4,5-tetrahydro-1H-3-benzazepine-7,8-diol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H16 Cl N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-07-21
_chem_comp.pdbx_modified_date 2021-02-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 305.756
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G3C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7CKW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G3C C10 C1 C 0 1 Y N N N N N 102.682 109.921 142.799 -3.525 -0.526 1.357 C10 G3C 1
G3C C13 C2 C 0 1 Y N N N N N 102.978 112.296 142.608 -4.251 -0.148 -0.900 C13 G3C 2
G3C C15 C3 C 0 1 N N N N N N 103.142 111.913 138.488 -0.591 2.449 0.416 C15 G3C 3
G3C C17 C4 C 0 1 N N N N N N 104.000 111.509 136.246 1.470 2.994 -0.742 C17 G3C 4
G3C C20 C5 C 0 1 Y N N N N N 107.134 110.219 137.546 2.616 -0.355 0.144 C20 G3C 5
G3C C02 C6 C 0 1 Y N N N N N 107.998 110.306 138.636 2.338 -1.685 -0.122 C02 G3C 6
G3C C03 C7 C 0 1 Y N N N N N 107.487 110.522 139.923 1.051 -2.056 -0.499 C03 G3C 7
G3C C05 C8 C 0 1 Y N N N N N 106.112 110.649 140.123 0.064 -1.094 -0.613 C05 G3C 8
G3C C06 C9 C 0 1 Y N N N N N 105.239 110.563 139.013 0.348 0.240 -0.353 C06 G3C 9
G3C C07 C10 C 0 1 N N R N N N 103.708 110.704 139.225 -0.765 1.246 -0.511 C07 G3C 10
G3C C08 C11 C 0 1 Y N N N N N 103.345 110.885 140.701 -2.078 0.575 -0.201 C08 G3C 11
G3C C09 C12 C 0 1 Y N N N N N 103.020 109.774 141.462 -2.320 0.085 1.069 C09 G3C 12
G3C C11 C13 C 0 1 Y N N N N N 102.660 111.183 143.370 -4.494 -0.646 0.372 C11 G3C 13
G3C C14 C14 C 0 1 Y N N N N N 103.316 112.149 141.272 -3.046 0.467 -1.182 C14 G3C 14
G3C C18 C15 C 0 1 N N N N N N 104.811 110.246 136.520 1.958 2.037 0.350 C18 G3C 15
G3C C19 C16 C 0 1 Y N N N N N 105.742 110.353 137.752 1.621 0.604 0.031 C19 G3C 16
G3C N16 N1 N 0 1 N N N N N N 102.840 111.661 137.097 0.148 3.476 -0.333 N16 G3C 17
G3C O01 O1 O 0 1 N N N N N N 109.378 110.178 138.443 3.317 -2.624 -0.014 O01 G3C 18
G3C O04 O2 O 0 1 N N N N N N 108.361 110.609 141.013 0.765 -3.361 -0.756 O04 G3C 19
G3C O12 O3 O 0 1 N N N N N N 102.317 111.334 144.721 -5.678 -1.251 0.651 O12 G3C 20
G3C CL2 CL1 CL 0 0 N N N N N N 107.774 109.944 135.903 4.218 0.114 0.621 CL2 G3C 21
G3C H1 H1 H 0 1 N N N N N N 102.436 109.054 143.394 -3.711 -0.913 2.348 H1 G3C 22
G3C H2 H2 H 0 1 N N N N N N 102.962 113.279 143.056 -5.003 -0.241 -1.669 H2 G3C 23
G3C H3 H3 H 0 1 N N N N N N 103.880 112.727 138.540 -1.567 2.835 0.710 H3 G3C 24
G3C H4 H4 H 0 1 N N N N N N 102.216 112.224 138.993 -0.027 2.156 1.302 H4 G3C 25
G3C H5 H5 H 0 1 N N N N N N 104.655 112.380 136.396 2.158 3.833 -0.836 H5 G3C 26
G3C H6 H6 H 0 1 N N N N N N 103.660 111.482 135.200 1.395 2.466 -1.693 H6 G3C 27
G3C H7 H7 H 0 1 N N N N N N 105.718 110.811 141.115 -0.935 -1.382 -0.906 H7 G3C 28
G3C H8 H8 H 0 1 N N N N N N 103.217 109.795 138.848 -0.782 1.595 -1.543 H8 G3C 29
G3C H9 H9 H 0 1 N N N N N N 103.030 108.792 141.013 -1.565 0.179 1.836 H9 G3C 30
G3C H10 H10 H 0 1 N N N N N N 103.556 113.017 140.676 -2.861 0.863 -2.170 H10 G3C 31
G3C H11 H11 H 0 1 N N N N N N 104.111 109.414 136.686 3.040 2.134 0.448 H11 G3C 32
G3C H12 H12 H 0 1 N N N N N N 105.430 110.033 135.636 1.492 2.311 1.296 H12 G3C 33
G3C H13 H13 H 0 1 N N N N N N 102.298 112.427 136.752 0.224 4.329 0.200 H13 G3C 34
G3C H15 H15 H 0 1 N N N N N N 109.824 110.260 139.278 3.387 -3.020 0.865 H15 G3C 35
G3C H16 H16 H 0 1 N N N N N N 107.863 110.756 141.808 0.468 -3.858 0.019 H16 G3C 36
G3C H17 H17 H 0 1 N N N N N N 102.129 110.482 145.097 -6.362 -0.648 0.972 H17 G3C 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G3C CL2 C20 SING N N 1
G3C C17 C18 SING N N 2
G3C C17 N16 SING N N 3
G3C C18 C19 SING N N 4
G3C N16 C15 SING N N 5
G3C C20 C19 DOUB Y N 6
G3C C20 C02 SING Y N 7
G3C C19 C06 SING Y N 8
G3C O01 C02 SING N N 9
G3C C15 C07 SING N N 10
G3C C02 C03 DOUB Y N 11
G3C C06 C07 SING N N 12
G3C C06 C05 DOUB Y N 13
G3C C07 C08 SING N N 14
G3C C03 C05 SING Y N 15
G3C C03 O04 SING N N 16
G3C C08 C14 DOUB Y N 17
G3C C08 C09 SING Y N 18
G3C C14 C13 SING Y N 19
G3C C09 C10 DOUB Y N 20
G3C C13 C11 DOUB Y N 21
G3C C10 C11 SING Y N 22
G3C C11 O12 SING N N 23
G3C C10 H1 SING N N 24
G3C C13 H2 SING N N 25
G3C C15 H3 SING N N 26
G3C C15 H4 SING N N 27
G3C C17 H5 SING N N 28
G3C C17 H6 SING N N 29
G3C C05 H7 SING N N 30
G3C C07 H8 SING N N 31
G3C C09 H9 SING N N 32
G3C C14 H10 SING N N 33
G3C C18 H11 SING N N 34
G3C C18 H12 SING N N 35
G3C N16 H13 SING N N 36
G3C O01 H15 SING N N 37
G3C O04 H16 SING N N 38
G3C O12 H17 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G3C InChI InChI 1.03 InChI=1S/C16H16ClNO3/c17-15-11-5-6-18-8-13(9-1-3-10(19)4-2-9)12(11)7-14(20)16(15)21/h1-4,7,13,18-21H,5-6,8H2/t13-/m1/s1
G3C InChIKey InChI 1.03 TVURRHSHRRELCG-CYBMUJFWSA-N
G3C SMILES_CANONICAL CACTVS 3.385 Oc1ccc(cc1)[C@H]2CNCCc3c(Cl)c(O)c(O)cc23
G3C SMILES CACTVS 3.385 Oc1ccc(cc1)[CH]2CNCCc3c(Cl)c(O)c(O)cc23
G3C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1[C@H]2CNCCc3c2cc(c(c3Cl)O)O)O
G3C SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C2CNCCc3c2cc(c(c3Cl)O)O)O
#
_pdbx_chem_comp_identifier.comp_id G3C
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(1~{R})-6-chloranyl-1-(4-hydroxyphenyl)-2,3,4,5-tetrahydro-1~{H}-3-benzazepine-7,8-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G3C 'Create component' 2020-07-21 PDBJ
G3C 'Initial release' 2021-03-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G3C C10 C 8.144 2.494 1
G3C C13 C 5.611 3.073 2
G3C C15 C 4.581 -1.206 3
G3C C17 C 4.581 -3.909 4
G3C C20 C 8.557 -4.110 5
G3C C02 C 9.916 -3.339 6
G3C C03 C 9.916 -1.776 7
G3C C05 C 8.557 -1.006 8
G3C C06 C 7.216 -1.808 9
G3C C07 C 6.043 -0.873 10
G3C C08 C 6.377 0.590 11
G3C C09 C 7.810 1.032 12
G3C C11 C 7.045 3.515 13
G3C C14 C 5.277 1.610 14
G3C C18 C 6.043 -4.243 15
G3C C19 C 7.216 -3.308 16
G3C N16 N 3.930 -2.558 17
G3C O01 O 11.212 -4.094 18
G3C O04 O 11.212 -1.022 19
G3C O12 O 7.378 4.977 20
G3C CL2 Cl 8.540 -5.610 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G3C CL2 C20 SINGLE NONE 1
G3C C17 C18 SINGLE NONE 2
G3C C17 N16 SINGLE NONE 3
G3C C18 C19 SINGLE NONE 4
G3C N16 C15 SINGLE NONE 5
G3C C20 C19 DOUBLE NONE 6
G3C C20 C02 SINGLE NONE 7
G3C C19 C06 SINGLE NONE 8
G3C O01 C02 SINGLE NONE 9
G3C C15 C07 SINGLE NONE 10
G3C C02 C03 DOUBLE NONE 11
G3C C06 C07 SINGLE NONE 12
G3C C06 C05 DOUBLE NONE 13
G3C C07 C08 SINGLE BEGINDASH 14
G3C C03 C05 SINGLE NONE 15
G3C C03 O04 SINGLE NONE 16
G3C C08 C14 DOUBLE NONE 17
G3C C08 C09 SINGLE NONE 18
G3C C14 C13 SINGLE NONE 19
G3C C09 C10 DOUBLE NONE 20
G3C C13 C11 DOUBLE NONE 21
G3C C10 C11 SINGLE NONE 22
G3C C11 O12 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G3C MurckoScaffold S1 scaffold 'c1ccc([C@H]2CNCCc3ccccc32)cc1' InChI=1S/C16H17N/c1-2-6-13(7-3-1)16-12-17-11-10-14-8-4-5-9-15(14)16/h1-9,16-17H,10-12H2/t16-/m1/s1 MEXPXLPUVFBQGJ-MRXNPFEDSA-N
G3C phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G3C Z360053598 F2 fragment Cl.Oc1ccc2c(c1)CCNCC2 'InChI=1S/C10H13NO.ClH/c12-10-2-1-8-3-5-11-6-4-9(8)7-10;/h1-2,7,11-12H,3-6H2;1H' CZDCSEQUSFTXDQ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G3C C10 S1 1
G3C C13 S1 1
G3C C15 S1 1
G3C C17 S1 1
G3C C20 S1 1
G3C C02 S1 1
G3C C03 S1 1
G3C C05 S1 1
G3C C06 S1 1
G3C C07 S1 1
G3C C08 S1 1
G3C C09 S1 1
G3C C11 S1 1
G3C C14 S1 1
G3C C18 S1 1
G3C C19 S1 1
G3C N16 S1 1
G3C C10 F1 1
G3C C09 F1 1
G3C C08 F1 1
G3C C14 F1 1
G3C C13 F1 1
G3C C11 F1 1
G3C C20 F1 2
G3C C19 F1 2
G3C C06 F1 2
G3C C05 F1 2
G3C C03 F1 2
G3C C02 F1 2
G3C CL2 F2 1
G3C O01 F2 1
G3C C02 F2 1
G3C C03 F2 1
G3C C05 F2 1
G3C C06 F2 1
G3C C07 F2 1
G3C C15 F2 1
G3C N16 F2 1
G3C C17 F2 1
G3C C18 F2 1
G3C C19 F2 1
G3C C20 F2 1
G3C CL2 F2 2
G3C O04 F2 2
G3C C03 F2 2
G3C C02 F2 2
G3C C20 F2 2
G3C C19 F2 2
G3C C18 F2 2
G3C C17 F2 2
G3C N16 F2 2
G3C C15 F2 2
G3C C07 F2 2
G3C C06 F2 2
G3C C05 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id G3C
_pdbe_chem_comp_rdkit_properties.exactmw 305.082
_pdbe_chem_comp_rdkit_properties.amw 305.761
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 149.976
_pdbe_chem_comp_rdkit_properties.tpsa 72.720
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.183
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.677
_pdbe_chem_comp_rdkit_properties.chi0v 10.806
_pdbe_chem_comp_rdkit_properties.chi1v 5.877
_pdbe_chem_comp_rdkit_properties.chi2v 2.981
_pdbe_chem_comp_rdkit_properties.chi3v 2.981
_pdbe_chem_comp_rdkit_properties.chi4v 1.919
_pdbe_chem_comp_rdkit_properties.chi0n 26.050
_pdbe_chem_comp_rdkit_properties.chi1n 13.171
_pdbe_chem_comp_rdkit_properties.chi2n 2.620
_pdbe_chem_comp_rdkit_properties.chi3n 2.620
_pdbe_chem_comp_rdkit_properties.chi4n 1.691
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.910
_pdbe_chem_comp_rdkit_properties.kappa1 4.541
_pdbe_chem_comp_rdkit_properties.kappa2 5.466
_pdbe_chem_comp_rdkit_properties.kappa3 2.522
_pdbe_chem_comp_rdkit_properties.Phi 1.182
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G3C UniChem 'Guide to Pharmacology' 985
G3C UniChem ZINC ZINC000022116612
G3C UniChem fdasrs Y9ESM282DO
G3C UniChem SureChEMBL SCHEMBL9157427
G3C UniChem PubChem 12668023
G3C UniChem 'Probes And Drugs' PD048739
G3C UniChem Nikkaji J353.503G
G3C UniChem PubChem 30026875
G3C UniChem Mcule MCULE-3764473965
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G3C C10 3.294 0.835 1.024 ETKDGv3 1
G3C C13 3.720 0.553 -1.361 ETKDGv3 2
G3C C15 0.288 -2.214 0.221 ETKDGv3 3
G3C C17 -2.059 -2.675 -0.389 ETKDGv3 4
G3C C20 -2.894 0.530 1.362 ETKDGv3 5
G3C C02 -2.688 1.978 1.129 ETKDGv3 6
G3C C03 -1.715 2.387 0.290 ETKDGv3 7
G3C C05 -0.798 1.396 -0.295 ETKDGv3 8
G3C C06 -0.887 0.080 -0.005 ETKDGv3 9
G3C C07 0.221 -0.857 -0.520 ETKDGv3 10
G3C C08 1.593 -0.205 -0.406 ETKDGv3 11
G3C C09 2.086 0.271 0.915 ETKDGv3 12
G3C C11 4.154 0.986 -0.167 ETKDGv3 13
G3C C14 2.387 -0.072 -1.485 ETKDGv3 14
G3C C18 -2.492 -1.865 0.839 ETKDGv3 15
G3C C19 -2.105 -0.394 0.755 ETKDGv3 16
G3C N16 -0.692 -3.195 -0.268 ETKDGv3 17
G3C O01 -3.533 2.875 1.791 ETKDGv3 18
G3C O04 -1.516 3.727 -0.052 ETKDGv3 19
G3C O12 5.409 1.578 -0.035 ETKDGv3 20
G3C CL2 -4.234 0.071 2.422 ETKDGv3 21
G3C H1 3.644 1.182 1.988 ETKDGv3 22
G3C H2 4.341 0.656 -2.242 ETKDGv3 23
G3C H3 1.297 -2.665 0.086 ETKDGv3 24
G3C H4 0.176 -2.069 1.317 ETKDGv3 25
G3C H5 -2.741 -3.547 -0.490 ETKDGv3 26
G3C H6 -2.178 -2.076 -1.320 ETKDGv3 27
G3C H7 0.001 1.772 -0.921 ETKDGv3 28
G3C H8 0.005 -1.058 -1.593 ETKDGv3 29
G3C H9 1.463 0.166 1.795 ETKDGv3 30
G3C H10 2.063 -0.417 -2.459 ETKDGv3 31
G3C H11 -2.097 -2.315 1.775 ETKDGv3 32
G3C H12 -3.598 -1.958 0.880 ETKDGv3 33
G3C H13 -0.388 -3.525 -1.214 ETKDGv3 34
G3C H15 -3.432 3.879 1.768 ETKDGv3 35
G3C H16 -2.126 4.483 0.223 ETKDGv3 36
G3C H17 6.029 1.699 -0.828 ETKDGv3 37
#