data_FRU
#
_chem_comp.id FRU
_chem_comp.name beta-D-fructofuranose
_chem_comp.type "D-saccharide, beta linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C6 H12 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "beta-D-fructose; D-fructose; fructose"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 180.156
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FRU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AF6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 FRU beta-D-fructose PDB ?
2 FRU D-fructose PDB ?
3 FRU fructose PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FRU C1 C1 C 0 1 N N N N N N -6.763 20.037 85.842 0.791 1.055 -1.776 C1 FRU 1
FRU C2 C2 C 0 1 N N R N N N -7.004 18.781 84.967 0.144 -0.149 -1.090 C2 FRU 2
FRU C3 C3 C 0 1 N N S N N N -7.244 17.468 85.783 -1.304 0.188 -0.689 C3 FRU 3
FRU C4 C4 C 0 1 N N S N N N -6.885 16.423 84.693 -1.307 0.081 0.857 C4 FRU 4
FRU C5 C5 C 0 1 N N R N N N -5.586 17.071 84.173 0.198 0.230 1.193 C5 FRU 5
FRU C6 C6 C 0 1 N N N N N N -5.172 16.631 82.793 0.518 -0.427 2.536 C6 FRU 6
FRU O1 O1 O 0 1 N N N N N N -5.779 19.828 86.850 2.138 0.735 -2.130 O1 FRU 7
FRU O2 O2 O 0 1 N Y N N N N -8.144 19.005 84.091 0.154 -1.273 -1.972 O2 FRU 8
FRU O3 O3 O 0 1 N N N N N N -8.614 17.357 86.194 -2.215 -0.752 -1.261 O3 FRU 9
FRU O4 O4 O 0 1 N N N N N N -6.688 15.124 85.236 -2.072 1.137 1.440 O4 FRU 10
FRU O5 O5 O 0 1 N N N N N N -5.832 18.505 84.123 0.858 -0.467 0.115 O5 FRU 11
FRU O6 O6 O 0 1 N N N N N N -3.807 16.950 82.588 1.919 -0.319 2.798 O6 FRU 12
FRU H11 H11 H 0 1 N N N N N N -6.506 20.919 85.211 0.229 1.307 -2.675 H11 FRU 13
FRU H12 H12 H 0 1 N N N N N N -7.717 20.403 86.286 0.787 1.906 -1.095 H12 FRU 14
FRU H3 H3 H 0 1 N N N N N N -6.666 17.378 86.732 -1.560 1.202 -0.998 H3 FRU 15
FRU H4 H4 H 0 1 N N N N N N -7.663 16.236 83.917 -1.680 -0.890 1.179 H4 FRU 16
FRU H5 H5 H 0 1 N N N N N N -4.761 16.765 84.859 0.487 1.281 1.203 H5 FRU 17
FRU H61 H61 H 0 1 N N N N N N -5.385 15.551 82.612 0.235 -1.479 2.503 H61 FRU 18
FRU H62 H62 H 0 1 N N N N N N -5.828 17.057 81.999 -0.037 0.074 3.328 H62 FRU 19
FRU HO1 HO1 H 0 1 N Y N N N N -5.631 20.598 87.386 2.508 1.518 -2.558 HO1 FRU 20
FRU HO2 HO2 H 0 1 N Y N N N N -8.291 18.235 83.554 1.080 -1.452 -2.186 HO2 FRU 21
FRU HO3 HO3 H 0 1 N Y N N N N -8.759 16.559 86.689 -3.101 -0.491 -0.977 HO3 FRU 22
FRU HO4 HO4 H 0 1 N Y N N N N -6.468 14.484 84.568 -2.034 1.013 2.399 HO4 FRU 23
FRU HO6 HO6 H 0 1 N Y N N N N -3.545 16.672 81.717 2.078 -0.745 3.651 HO6 FRU 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FRU C1 C2 SING N N 1
FRU C1 O1 SING N N 2
FRU C1 H11 SING N N 3
FRU C1 H12 SING N N 4
FRU C2 C3 SING N N 5
FRU C2 O2 SING N N 6
FRU C2 O5 SING N N 7
FRU C3 C4 SING N N 8
FRU C3 O3 SING N N 9
FRU C3 H3 SING N N 10
FRU C4 C5 SING N N 11
FRU C4 O4 SING N N 12
FRU C4 H4 SING N N 13
FRU C5 C6 SING N N 14
FRU C5 O5 SING N N 15
FRU C5 H5 SING N N 16
FRU C6 O6 SING N N 17
FRU C6 H61 SING N N 18
FRU C6 H62 SING N N 19
FRU O1 HO1 SING N N 20
FRU O2 HO2 SING N N 21
FRU O3 HO3 SING N N 22
FRU O4 HO4 SING N N 23
FRU O6 HO6 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FRU SMILES ACDLabs 10.04 OC1C(O)C(OC1(O)CO)CO
FRU SMILES_CANONICAL CACTVS 3.341 OC[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O
FRU SMILES CACTVS 3.341 OC[CH]1O[C](O)(CO)[CH](O)[CH]1O
FRU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)O
FRU SMILES "OpenEye OEToolkits" 1.5.0 C(C1C(C(C(O1)(CO)O)O)O)O
FRU InChI InChI 1.03 InChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5+,6-/m1/s1
FRU InChIKey InChI 1.03 RFSUNEUAIZKAJO-ARQDHWQXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FRU "SYSTEMATIC NAME" ACDLabs 10.04 beta-D-fructofuranose
FRU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3S,4S,5R)-2,5-bis(hydroxymethyl)oxolane-2,3,4-triol
FRU "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DFrufb
FRU "COMMON NAME" GMML 1.0 b-D-fructofuranose
FRU "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Fruf
FRU "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Fru
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
FRU "CARBOHYDRATE ISOMER" D PDB ?
FRU "CARBOHYDRATE RING" furanose PDB ?
FRU "CARBOHYDRATE ANOMER" beta PDB ?
FRU "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FRU 'Create component' 1999-07-08 EBI
FRU 'Modify descriptor' 2011-06-04 RCSB
FRU 'Other modification' 2019-08-12 RCSB
FRU 'Other modification' 2019-12-19 RCSB
FRU 'Other modification' 2020-07-03 RCSB
FRU 'Modify name' 2020-07-17 RCSB
FRU 'Modify synonyms' 2020-07-17 RCSB
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
FRU Fructose ChEMBL 'International Nonproprietary Name'
FRU beta-D-fructose wwPDB ?
FRU D-fructose wwPDB ?
FRU fructose wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FRU C1 C 7.213 2.368 1
FRU C2 C 6.331 1.154 2
FRU C3 C 5.118 0.272 3
FRU C4 C 5.581 -1.154 4
FRU C5 C 7.081 -1.154 5
FRU C6 C 7.963 -2.368 6
FRU O1 O 8.705 2.211 7
FRU O2 O 5.449 2.368 8
FRU O3 O 3.691 0.736 9
FRU O4 O 4.699 -2.368 10
FRU O5 O 7.545 0.272 11
FRU O6 O 9.455 -2.211 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FRU C1 C2 SINGLE NONE 1
FRU C1 O1 SINGLE NONE 2
FRU C2 C3 SINGLE NONE 3
FRU C2 O2 SINGLE BEGINDASH 4
FRU C2 O5 SINGLE NONE 5
FRU C3 C4 SINGLE NONE 6
FRU C3 O3 SINGLE BEGINDASH 7
FRU C4 C5 SINGLE NONE 8
FRU C4 O4 SINGLE BEGINWEDGE 9
FRU C5 C6 SINGLE BEGINDASH 10
FRU C5 O5 SINGLE NONE 11
FRU C6 O6 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FRU MurckoScaffold S1 scaffold C1CCOC1 InChI=1S/C4H8O/c1-2-4-5-3-1/h1-4H2 WYURNTSHIVDZCO-UHFFFAOYSA-N
FRU furanose F1 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
FRU ribose F2 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FRU C2 S1 1
FRU C3 S1 1
FRU C4 S1 1
FRU C5 S1 1
FRU O5 S1 1
FRU C4 F1 1
FRU C5 F1 1
FRU O5 F1 1
FRU C2 F1 1
FRU C3 F1 1
FRU O2 F1 1
FRU C3 F2 1
FRU C4 F2 1
FRU C5 F2 1
FRU O5 F2 1
FRU C2 F2 1
FRU C6 F2 1
FRU O6 F2 1
FRU O4 F2 1
FRU O3 F2 1
FRU C4 F2 2
FRU C3 F2 2
FRU C2 F2 2
FRU O5 F2 2
FRU C5 F2 2
FRU C1 F2 2
FRU O1 F2 2
FRU O3 F2 2
FRU O4 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id FRU
_pdbe_chem_comp_rdkit_properties.exactmw 180.063
_pdbe_chem_comp_rdkit_properties.amw 180.156
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.936
_pdbe_chem_comp_rdkit_properties.tpsa 110.380
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.220
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.008
_pdbe_chem_comp_rdkit_properties.chi0v 5.449
_pdbe_chem_comp_rdkit_properties.chi1v 2.679
_pdbe_chem_comp_rdkit_properties.chi2v 1.184
_pdbe_chem_comp_rdkit_properties.chi3v 1.184
_pdbe_chem_comp_rdkit_properties.chi4v 0.623
_pdbe_chem_comp_rdkit_properties.chi0n 17.449
_pdbe_chem_comp_rdkit_properties.chi1n 8.220
_pdbe_chem_comp_rdkit_properties.chi2n 1.184
_pdbe_chem_comp_rdkit_properties.chi3n 1.184
_pdbe_chem_comp_rdkit_properties.chi4n 0.623
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.240
_pdbe_chem_comp_rdkit_properties.kappa1 2.412
_pdbe_chem_comp_rdkit_properties.kappa2 3.250
_pdbe_chem_comp_rdkit_properties.kappa3 1.327
_pdbe_chem_comp_rdkit_properties.Phi 0.653
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FRU UniChem ChEMBL CHEMBL604608
FRU UniChem PDBe FRU
FRU UniChem 'KEGG LIGAND' C02336
FRU UniChem ChEBI 28645
FRU UniChem ZINC ZINC000001529270
FRU UniChem fdasrs B986VTP17J
FRU UniChem SureChEMBL SCHEMBL3966
FRU UniChem HMDB HMDB0000660
FRU UniChem NMRShiftDB 60028243
FRU UniChem ACTor 53188-23-1
FRU UniChem Recon fru
FRU UniChem BindingDb 50249032
FRU UniChem MetaboLights MTBLC28645
FRU UniChem BRENDA 124163
FRU UniChem BRENDA 1630
FRU UniChem BRENDA 2782
FRU UniChem Rhea 28645
FRU UniChem DailyMed FRUCTOSE
FRU UniChem ClinicalTrials FRUCTOSE
FRU UniChem rxnorm FRUCTOSE
FRU UniChem 'Probes And Drugs' PD057483
FRU UniChem 'EPA CompTox Dashboard' DTXSID5023081
FRU UniChem eMolecules 884762
FRU UniChem 'PubChem TPHARMA' 14772731
FRU UniChem PubChem 439709
FRU UniChem Nikkaji J450.088A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FRU C1 -1.970 0.882 0.431 ETKDGv3 1
FRU C2 -1.152 0.054 -0.590 ETKDGv3 2
FRU C3 -0.654 -1.267 0.024 ETKDGv3 3
FRU C4 0.712 -0.912 0.574 ETKDGv3 4
FRU C5 1.061 0.404 -0.142 ETKDGv3 5
FRU C6 2.334 0.266 -0.989 ETKDGv3 6
FRU O1 -2.336 2.120 -0.119 ETKDGv3 7
FRU O2 -1.935 -0.188 -1.734 ETKDGv3 8
FRU O3 -0.554 -2.289 -0.942 ETKDGv3 9
FRU O4 0.631 -0.713 1.962 ETKDGv3 10
FRU O5 -0.014 0.793 -0.973 ETKDGv3 11
FRU O6 2.632 1.479 -1.627 ETKDGv3 12
FRU H11 -2.876 0.319 0.755 ETKDGv3 13
FRU H12 -1.360 1.074 1.339 ETKDGv3 14
FRU H3 -1.335 -1.624 0.829 ETKDGv3 15
FRU H4 1.442 -1.730 0.358 ETKDGv3 16
FRU H5 1.231 1.210 0.607 ETKDGv3 17
FRU H61 2.182 -0.513 -1.766 ETKDGv3 18
FRU H62 3.189 -0.050 -0.348 ETKDGv3 19
FRU HO1 -3.132 1.956 -0.689 ETKDGv3 20
FRU HO2 -2.720 -0.728 -1.452 ETKDGv3 21
FRU HO3 0.041 -1.969 -1.671 ETKDGv3 22
FRU HO4 1.565 -0.649 2.292 ETKDGv3 23
FRU HO6 3.018 2.077 -0.935 ETKDGv3 24
#