data_FOR
#
_chem_comp.id FOR
_chem_comp.name 'FORMYL GROUP'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C H2 O'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 30.026
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FOR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FOR C C C 0 1 N N N N N N 19.495 51.786 15.788 0.607 0.000 0.000 C FOR 1
FOR O O O 0 1 N N N N N N 20.015 52.842 16.206 -0.600 0.000 0.000 O FOR 2
FOR H1 1H H 0 1 N N N N N N 20.073 50.922 16.157 1.147 0.935 0.002 H1 FOR 3
FOR H2 2H H 0 1 N N N N N N 18.458 51.717 16.157 1.147 -0.935 0.002 H2 FOR 4
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FOR C O DOUB N N 1
FOR C H1 SING N N 2
FOR C H2 SING N N 3
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FOR SMILES ACDLabs 10.04 O=C
FOR SMILES_CANONICAL CACTVS 3.341 C=O
FOR SMILES CACTVS 3.341 C=O
FOR SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 C=O
FOR SMILES 'OpenEye OEToolkits' 1.5.0 C=O
FOR InChI InChI 1.03 InChI=1S/CH2O/c1-2/h1H2
FOR InChIKey InChI 1.03 WSFSSNUMVMOOMR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FOR 'SYSTEMATIC NAME' ACDLabs 10.04 formaldehyde
FOR 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 methanal
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FOR 'Create component' 1999-07-08 RCSB
FOR 'Modify descriptor' 2011-06-04 RCSB
FOR 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 FOR CYS None Crosslinker 'Amino-acid side chain' 'Any position' C SG ? ?
2 FOR HIS None Crosslinker 'Amino-acid side chain' 'Any position' C NE2 ? ?
3 FOR LYS None Crosslinker 'Amino-acid side chain' 'Any position' C NZ ? ?
4 FOR PRO None Crosslinker 'Amino-acid backbone' N-terminal C N ? ?
5 FOR TYR None Crosslinker 'Amino-acid side chain' 'Any position' C CE1 ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id FOR
_pdbe_chem_comp_drugbank_details.drugbank_id DB03843
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Formaldehyde
_pdbe_chem_comp_drugbank_details.description
'A highly reactive aldehyde gas formed by oxidation or incomplete combustion of hydrocarbons. In solution, it has a wide range of uses: in the manufacture of resins and textiles, as a disinfectant, and as a laboratory fixative or preservative. Formaldehyde solution (formalin) is considered a hazardous compound, and its vapor toxic. (From Reynolds, Martindale The Extra Pharmacopoeia, 30th ed, p717)'
_pdbe_chem_comp_drugbank_details.cas_number 50-00-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
FOR Formaldehyde DrugBank ?
FOR 'Formaldehyde solution' DrugBank ?
FOR Formalin DrugBank ?
FOR 'Formic aldehyde' DrugBank ?
FOR Formol DrugBank ?
FOR Methanal DrugBank ?
FOR 'Methyl aldehyde' DrugBank ?
FOR 'Methylene oxide' DrugBank ?
FOR Oxomethane DrugBank ?
FOR Oxomethylene DrugBank ?
FOR Oxymethylene DrugBank ?
FOR Paraform DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id FOR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03843
_pdbe_chem_comp_drugbank_classification.parent 'Carbonyl compounds'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as carbonyl compounds. These are organic compounds containing a carbonyl group, with the general structure RC(=O)R', where R=organyl, R'=H, N, O, organyl group or halide group."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
FOR DB03843 'Transient receptor potential cation channel subfamily A member 1' Humans O75762 yes 1
FOR DB03843 'D-alanyl-D-alanine carboxypeptidase' 'Streptomyces sp. (strain R61)' P15555 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FOR C C 3.000 -0.840 1
FOR O O 4.299 -0.090 2
#
_pdbe_chem_comp_bond_depiction.comp_id FOR
_pdbe_chem_comp_bond_depiction.atom_id_1 C
_pdbe_chem_comp_bond_depiction.atom_id_2 O
_pdbe_chem_comp_bond_depiction.value_order DOUBLE
_pdbe_chem_comp_bond_depiction.bond_dir NONE
_pdbe_chem_comp_bond_depiction.pdbx_ordinal 1
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id FOR
_pdbe_chem_comp_rdkit_properties.exactmw 30.011
_pdbe_chem_comp_rdkit_properties.amw 30.026
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtoms 4
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 15.711
_pdbe_chem_comp_rdkit_properties.tpsa 17.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.185
_pdbe_chem_comp_rdkit_properties.CrippenMR 7.121
_pdbe_chem_comp_rdkit_properties.chi0v 0.908
_pdbe_chem_comp_rdkit_properties.chi1v 0.204
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 2.908
_pdbe_chem_comp_rdkit_properties.chi1n 1.204
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.330
_pdbe_chem_comp_rdkit_properties.kappa1 0.105
_pdbe_chem_comp_rdkit_properties.kappa2 0.670
_pdbe_chem_comp_rdkit_properties.kappa3 -5.360
_pdbe_chem_comp_rdkit_properties.Phi 0.035
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FOR UniChem DrugBank DB03843
FOR UniChem 'Guide to Pharmacology' 4196
FOR UniChem 'KEGG LIGAND' C00067
FOR UniChem ChEBI 16842
FOR UniChem eMolecules 483631
FOR UniChem atlas formaldehyde
FOR UniChem fdasrs 1HG84L3525
FOR UniChem PharmGKB PA449703
FOR UniChem HMDB HMDB0001426
FOR UniChem NMRShiftDB 60020901
FOR UniChem ACTor 112068-71-0
FOR UniChem ACTor 12795-06-1
FOR UniChem Recon fald
FOR UniChem Nikkaji J2.294B
FOR UniChem Nikkaji J369.708H
FOR UniChem 'EPA CompTox Dashboard' DTXSID7020637
FOR UniChem DrugCentral 3244
FOR UniChem MetaboLights MTBLC16842
FOR UniChem BRENDA 100541
FOR UniChem BRENDA 102610
FOR UniChem BRENDA 130
FOR UniChem BRENDA 21307
FOR UniChem BRENDA 5995
FOR UniChem Rhea 16842
FOR UniChem ChemicalBook CB4853677
FOR UniChem ChemicalBook CB82494012
FOR UniChem DailyMed FORMALDEHYDE
FOR UniChem ClinicalTrials FORMALDEHYDE
FOR UniChem ClinicalTrials 'FORMALDEHYDE SOLUTION'
FOR UniChem ClinicalTrials FORMALIN
FOR UniChem rxnorm FORMALDEHYDE
FOR UniChem rxnorm FORMALIN
FOR UniChem 'Probes And Drugs' PD009378
FOR UniChem CCDC KEMZIL
FOR UniChem SureChEMBL SCHEMBL268
FOR UniChem 'PubChem TPHARMA' 15320960
FOR UniChem PubChem 712
FOR UniChem Mcule MCULE-1476806907
FOR UniChem ACTor 104512-58-5
FOR UniChem ACTor 30525-89-4
FOR UniChem ACTor 50-00-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FOR C -0.032 0.006 0.008 ETKDGv3 1
FOR O 1.128 -0.211 -0.296 ETKDGv3 2
FOR H1 -0.657 -0.802 0.373 ETKDGv3 3
FOR H2 -0.439 1.007 -0.085 ETKDGv3 4
#