data_FHN
#
_chem_comp.id FHN
_chem_comp.name (2S,3R,5R,6S)-3,4,5-TRIHYDROXY-2,6-BIS(HYDROXYMETHYL)PIPERIDINIUM
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H16 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2009-10-20
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 194.206
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FHN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2WVT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FHN O2 O2 O 0 1 N N N N N N -34.102 10.902 -32.229 2.671 0.985 0.632 O2 FHN 1
FHN C2 C2 C 0 1 N N R N N N -33.422 9.722 -31.886 1.269 0.708 0.655 C2 FHN 2
FHN C3 C3 C 0 1 N N N N N N -31.925 9.991 -31.713 0.620 1.250 -0.622 C3 FHN 3
FHN O3 O3 O 0 1 N N N N N N -31.413 10.599 -32.926 0.759 2.672 -0.661 O3 FHN 4
FHN C4 C4 C 0 1 N N R N N N -31.220 8.707 -31.390 -0.866 0.880 -0.624 C4 FHN 5
FHN O4 O4 O 0 1 N N N N N N -31.370 7.771 -32.470 -1.516 1.511 0.481 O4 FHN 6
FHN C5 C5 C 0 1 N N S N N N -31.804 8.092 -30.111 -1.008 -0.638 -0.501 C5 FHN 7
FHN C7 C7 C 0 1 N N N N N N -31.134 6.747 -29.771 -2.491 -1.013 -0.503 C7 FHN 8
FHN O7 O7 O 0 1 N N N N N N -31.757 6.334 -28.558 -3.166 -0.292 0.529 O7 FHN 9
FHN N N N 1 1 N N N N N N -33.237 7.882 -30.236 -0.391 -1.092 0.751 N FHN 10
FHN C1 C1 C 0 1 N N S N N N -34.015 9.099 -30.602 1.048 -0.804 0.730 C1 FHN 11
FHN C6 C6 C 0 1 N N N N N N -34.180 10.061 -29.411 1.683 -1.473 -0.490 C6 FHN 12
FHN O6 O6 O 0 1 N N N N N N -34.825 9.301 -28.361 1.513 -2.889 -0.400 O6 FHN 13
FHN H2 H2 H 0 1 N N N N N N -34.256 11.418 -31.447 2.885 1.926 0.581 H2 FHN 14
FHN HA HA H 0 1 N N N N N N -33.551 9.002 -32.708 0.818 1.186 1.524 HA FHN 15
FHN H3 H3 H 0 1 N N N N N N -31.749 10.687 -30.879 1.108 0.812 -1.493 H3 FHN 16
FHN H1 H1 H 0 1 N N N N N N -35.052 8.825 -30.846 1.509 -1.194 1.638 H1 FHN 17
FHN HB HB H 0 1 N N N N N N -31.301 11.533 -32.790 0.369 3.083 -1.445 HB FHN 18
FHN H4 H4 H 0 1 N N N N N N -30.152 8.926 -31.241 -1.323 1.215 -1.555 H4 FHN 19
FHN HC HC H 0 1 N N N N N N -31.403 8.241 -33.295 -1.463 2.477 0.470 HC FHN 20
FHN H5 H5 H 0 1 N N N N N N -31.606 8.808 -29.300 -0.511 -1.119 -1.344 H5 FHN 21
FHN H71C H71C H 0 0 N N N N N N -31.295 6.010 -30.571 -2.929 -0.760 -1.469 H71C FHN 22
FHN H72C H72C H 0 0 N N N N N N -30.043 6.840 -29.667 -2.596 -2.084 -0.327 H72C FHN 23
FHN HN1 HN1 H 0 1 N N N N N N -33.384 7.199 -30.952 -0.818 -0.610 1.528 HN1 FHN 24
FHN HN2 HN2 H 0 1 N N N N N N -33.563 7.595 -29.335 -0.533 -2.085 0.855 HN2 FHN 25
FHN H7 H7 H 0 1 N N N N N N -31.099 6.242 -27.879 -4.113 -0.481 0.587 H7 FHN 26
FHN H61C H61C H 0 0 N N N N N N -33.200 10.430 -29.074 1.202 -1.107 -1.397 H61C FHN 27
FHN H62C H62C H 0 0 N N N N N N -34.777 10.941 -29.690 2.747 -1.237 -0.522 H62C FHN 28
FHN H6 H6 H 0 1 N N N N N N -34.966 8.409 -28.656 1.892 -3.379 -1.142 H6 FHN 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FHN O2 C2 SING N N 1
FHN C2 C3 SING N N 2
FHN C2 C1 SING N N 3
FHN C3 O3 SING N N 4
FHN C3 C4 SING N N 5
FHN C4 O4 SING N N 6
FHN C4 C5 SING N N 7
FHN C5 C7 SING N N 8
FHN C5 N SING N N 9
FHN C7 O7 SING N N 10
FHN N C1 SING N N 11
FHN C1 C6 SING N N 12
FHN C6 O6 SING N N 13
FHN O2 H2 SING N N 14
FHN C2 HA SING N N 15
FHN C3 H3 SING N N 16
FHN C1 H1 SING N N 17
FHN O3 HB SING N N 18
FHN C4 H4 SING N N 19
FHN O4 HC SING N N 20
FHN C5 H5 SING N N 21
FHN C7 H71C SING N N 22
FHN C7 H72C SING N N 23
FHN N HN1 SING N N 24
FHN N HN2 SING N N 25
FHN O7 H7 SING N N 26
FHN C6 H61C SING N N 27
FHN C6 H62C SING N N 28
FHN O6 H6 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FHN SMILES ACDLabs 10.04 OC1C(CO)[NH2+]C(C(O)C1O)CO
FHN SMILES_CANONICAL CACTVS 3.352 OC[C@@H]1[NH2+][C@@H](CO)[C@@H](O)[C@H](O)[C@@H]1O
FHN SMILES CACTVS 3.352 OC[CH]1[NH2+][CH](CO)[CH](O)[CH](O)[CH]1O
FHN SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 C([C@H]1[C@H](C([C@@H]([C@@H]([NH2+]1)CO)O)O)O)O
FHN SMILES "OpenEye OEToolkits" 1.6.1 C(C1C(C(C(C([NH2+]1)CO)O)O)O)O
FHN InChI InChI 1.03 InChI=1S/C7H15NO5/c9-1-3-5(11)7(13)6(12)4(2-10)8-3/h3-13H,1-2H2/p+1/t3-,4-,5+,6+/m0/s1
FHN InChIKey InChI 1.03 CLVUFWXGNIFGNC-UNTFVMJOSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FHN "SYSTEMATIC NAME" ACDLabs 10.04 (2S,3R,5R,6S)-3,4,5-trihydroxy-2,6-bis(hydroxymethyl)piperidinium
FHN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 (2S,3R,5R,6S)-2,6-bis(hydroxymethyl)piperidin-1-ium-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FHN 'Create component' 2009-10-20 EBI
FHN 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FHN O2 O 10.301 0.920 1
FHN C2 C 9.002 0.170 2
FHN C3 C 7.702 0.920 3
FHN O3 O 7.702 2.420 4
FHN C4 C 6.404 0.170 5
FHN O4 O 5.104 0.920 6
FHN C5 C 6.404 -1.330 7
FHN C7 C 5.104 -2.080 8
FHN O7 O 3.805 -1.330 9
FHN N N 7.702 -2.080 10
FHN C1 C 9.002 -1.330 11
FHN C6 C 10.301 -2.080 12
FHN O6 O 11.600 -1.330 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FHN C2 O2 SINGLE BEGINDASH 1
FHN C2 C3 SINGLE NONE 2
FHN C2 C1 SINGLE NONE 3
FHN C3 O3 SINGLE NONE 4
FHN C3 C4 SINGLE NONE 5
FHN C4 O4 SINGLE BEGINWEDGE 6
FHN C4 C5 SINGLE NONE 7
FHN C5 C7 SINGLE BEGINWEDGE 8
FHN C5 N SINGLE NONE 9
FHN C7 O7 SINGLE NONE 10
FHN N C1 SINGLE NONE 11
FHN C1 C6 SINGLE BEGINDASH 12
FHN C6 O6 SINGLE NONE 13
#
_pdbe_chem_comp_substructure.comp_id FHN
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles 'C1CC[NH2+]CC1'
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C5H11N/c1-2-4-6-5-3-1/h6H,1-5H2/p+1
_pdbe_chem_comp_substructure.substructure_inchikeys NQRYJNQNLNOLGT-UHFFFAOYSA-O
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FHN C2 S1 1
FHN C3 S1 1
FHN C4 S1 1
FHN C5 S1 1
FHN N S1 1
FHN C1 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FHN
_pdbe_chem_comp_rdkit_properties.exactmw 194.102
_pdbe_chem_comp_rdkit_properties.amw 194.207
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 98.473
_pdbe_chem_comp_rdkit_properties.tpsa 117.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.632
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.693
_pdbe_chem_comp_rdkit_properties.chi0v 5.988
_pdbe_chem_comp_rdkit_properties.chi1v 2.968
_pdbe_chem_comp_rdkit_properties.chi2v 1.260
_pdbe_chem_comp_rdkit_properties.chi3v 1.260
_pdbe_chem_comp_rdkit_properties.chi4v 0.670
_pdbe_chem_comp_rdkit_properties.chi0n 21.988
_pdbe_chem_comp_rdkit_properties.chi1n 10.404
_pdbe_chem_comp_rdkit_properties.chi2n 1.260
_pdbe_chem_comp_rdkit_properties.chi3n 1.260
_pdbe_chem_comp_rdkit_properties.chi4n 0.670
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.240
_pdbe_chem_comp_rdkit_properties.kappa1 2.133
_pdbe_chem_comp_rdkit_properties.kappa2 4.317
_pdbe_chem_comp_rdkit_properties.kappa3 1.984
_pdbe_chem_comp_rdkit_properties.Phi 0.708
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FHN UniChem PubChem 49866986
FHN UniChem Nikkaji J2.384.360I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FHN O2 2.144 2.126 0.669 ETKDGv3 1
FHN C2 1.015 1.291 0.767 ETKDGv3 2
FHN C3 -0.172 1.807 -0.080 ETKDGv3 3
FHN O3 0.198 1.945 -1.428 ETKDGv3 4
FHN C4 -1.376 0.849 0.045 ETKDGv3 5
FHN O4 -1.908 0.913 1.345 ETKDGv3 6
FHN C5 -0.952 -0.603 -0.284 ETKDGv3 7
FHN C7 -2.157 -1.557 -0.167 ETKDGv3 8
FHN O7 -1.813 -2.826 -0.652 ETKDGv3 9
FHN N 0.155 -1.049 0.593 ETKDGv3 10
FHN C1 1.365 -0.199 0.492 ETKDGv3 11
FHN C6 2.143 -0.434 -0.831 ETKDGv3 12
FHN O6 2.466 -1.789 -0.989 ETKDGv3 13
FHN H2 2.341 2.278 -0.290 ETKDGv3 14
FHN HA 0.687 1.341 1.829 ETKDGv3 15
FHN H3 -0.463 2.807 0.319 ETKDGv3 16
FHN H1 2.060 -0.507 1.307 ETKDGv3 17
FHN HB -0.479 2.533 -1.855 ETKDGv3 18
FHN H4 -2.157 1.161 -0.688 ETKDGv3 19
FHN HC -2.424 1.759 1.404 ETKDGv3 20
FHN H5 -0.626 -0.639 -1.347 ETKDGv3 21
FHN H71C -2.479 -1.637 0.896 ETKDGv3 22
FHN H72C -3.007 -1.158 -0.765 ETKDGv3 23
FHN HN1 -0.171 -1.044 1.589 ETKDGv3 24
FHN HN2 0.407 -2.039 0.367 ETKDGv3 25
FHN H7 -2.621 -3.392 -0.541 ETKDGv3 26
FHN H61C 1.551 -0.115 -1.709 ETKDGv3 27
FHN H62C 3.081 0.165 -0.836 ETKDGv3 28
FHN H6 3.193 -1.986 -0.342 ETKDGv3 29
#