data_FH7
#
_chem_comp.id FH7
_chem_comp.name N^5^-formyl-N^5^-hydroxy-D-ornithine
_chem_comp.type "PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C6 H12 N2 O4"
_chem_comp.mon_nstd_parent_comp_id LYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-12-20
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 176.170
_chem_comp.one_letter_code K
_chem_comp.three_letter_code FH7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2W77
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FH7 N N N 0 1 N N N Y Y N -66.540 -42.066 26.558 -1.993 1.425 1.091 N FH7 1
FH7 CA CA C 0 1 N N R Y N N -65.229 -41.787 27.183 -2.022 0.049 0.577 CA FH7 2
FH7 CB CB C 0 1 N N N N N N -64.157 -41.423 26.136 -0.956 -0.112 -0.509 CB FH7 3
FH7 CG CG C 0 1 N N N N N N -64.436 -40.196 25.239 0.433 0.060 0.110 CG FH7 4
FH7 CD CD C 0 1 N N N N N N -63.111 -39.742 24.619 1.498 -0.101 -0.976 CD FH7 5
FH7 NE NE N 0 1 N N N N N N -63.212 -38.758 23.549 2.828 0.063 -0.384 NE FH7 6
FH7 OZ OZ O 0 1 N N N N N N -63.653 -39.057 22.454 3.556 1.258 -0.600 OZ FH7 7
FH7 CZ CZ C 0 1 N N N N N N -62.767 -37.596 23.770 3.358 -0.922 0.367 CZ FH7 8
FH7 OH OH O 0 1 N N N N N N -62.755 -36.656 22.978 4.459 -0.786 0.858 OH FH7 9
FH7 C C C 0 1 N N N Y N Y -64.879 -42.995 28.004 -3.381 -0.242 -0.006 C FH7 10
FH7 O O O 0 1 N N N Y N Y -64.381 -43.960 27.475 -4.107 0.669 -0.328 O FH7 11
FH7 OXT OX0 O 0 1 N Y N Y N Y -65.173 -42.980 29.302 -3.785 -1.512 -0.167 OX0 FH7 12
FH7 H HN1 H 0 1 N N N Y Y N -67.242 -42.129 27.268 -1.114 1.623 1.545 HN1 FH7 13
FH7 H2 HN2 H 0 1 N Y N Y Y N -66.772 -41.327 25.925 -2.178 2.089 0.355 HN2 FH7 14
FH7 HA HA H 0 1 N N N Y N N -65.278 -40.901 27.833 -1.819 -0.647 1.391 HA FH7 15
FH7 HB1C HB1C H 0 0 N N N N N N -63.228 -41.214 26.686 -1.036 -1.105 -0.952 HB1C FH7 16
FH7 HB2C HB2C H 0 0 N N N N N N -64.121 -42.281 25.449 -1.106 0.643 -1.280 HB2C FH7 17
FH7 HG1C HG1C H 0 0 N N N N N N -65.147 -40.468 24.445 0.513 1.053 0.553 HG1C FH7 18
FH7 HG2C HG2C H 0 0 N N N N N N -64.873 -39.382 25.836 0.583 -0.696 0.881 HG2C FH7 19
FH7 HD1C HD1C H 0 0 N N N N N N -62.509 -39.293 25.423 1.418 -1.094 -1.419 HD1C FH7 20
FH7 HD2C HD2C H 0 0 N N N N N N -62.669 -40.640 24.162 1.348 0.654 -1.748 HD2C FH7 21
FH7 HZ HZ H 0 1 N N N N N N -62.357 -37.411 24.752 2.803 -1.833 0.533 HZ FH7 22
FH7 HXT HX0 H 0 1 N Y N Y N Y -64.931 -43.812 29.692 -4.664 -1.648 -0.544 HX0 FH7 23
FH7 H11 H11 H 0 1 N N N N N N -64.599 -39.135 22.503 4.422 1.275 -0.170 H11 FH7 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FH7 N CA SING N N 1
FH7 CA CB SING N N 2
FH7 CA C SING N N 3
FH7 CB CG SING N N 4
FH7 CG CD SING N N 5
FH7 CD NE SING N N 6
FH7 NE OZ SING N N 7
FH7 NE CZ SING N N 8
FH7 CZ OH DOUB N N 9
FH7 C O DOUB N N 10
FH7 C OXT SING N N 11
FH7 N H SING N N 12
FH7 N H2 SING N N 13
FH7 CA HA SING N N 14
FH7 CB HB1C SING N N 15
FH7 CB HB2C SING N N 16
FH7 CG HG1C SING N N 17
FH7 CG HG2C SING N N 18
FH7 CD HD1C SING N N 19
FH7 CD HD2C SING N N 20
FH7 CZ HZ SING N N 21
FH7 OXT HXT SING N N 22
FH7 OZ H11 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FH7 SMILES ACDLabs 10.04 O=C(O)C(N)CCCN(O)C=O
FH7 SMILES_CANONICAL CACTVS 3.352 N[C@H](CCCN(O)C=O)C(O)=O
FH7 SMILES CACTVS 3.352 N[CH](CCCN(O)C=O)C(O)=O
FH7 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 C(C[C@H](C(=O)O)N)CN(C=O)O
FH7 SMILES "OpenEye OEToolkits" 1.6.1 C(CC(C(=O)O)N)CN(C=O)O
FH7 InChI InChI 1.03 InChI=1S/C6H12N2O4/c7-5(6(10)11)2-1-3-8(12)4-9/h4-5,12H,1-3,7H2,(H,10,11)/t5-/m1/s1
FH7 InChIKey InChI 1.03 KORLZEIJSHHTDW-RXMQYKEDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FH7 "SYSTEMATIC NAME" ACDLabs 10.04 N~5~-formyl-N~5~-hydroxy-D-ornithine
FH7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-2-amino-5-(hydroxy-methanoyl-amino)pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FH7 'Create component' 2008-12-20 EBI
FH7 'Modify descriptor' 2011-06-04 RCSB
FH7 'Modify parent residue' 2014-01-20 EBI
FH7 'Modify one letter code' 2014-01-20 EBI
FH7 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FH7 N N 6.404 3.000 1
FH7 CA C 7.702 2.250 2
FH7 CB C 7.702 0.750 3
FH7 CG C 6.404 0.000 4
FH7 CD C 6.404 -1.500 5
FH7 NE N 5.104 -2.250 6
FH7 OZ O 3.805 -1.500 7
FH7 CZ C 5.104 -3.750 8
FH7 OH O 3.805 -4.500 9
FH7 C C 9.002 3.000 10
FH7 O O 10.301 2.250 11
FH7 OXT O 9.002 4.500 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FH7 CA N SINGLE BEGINWEDGE 1
FH7 CA CB SINGLE NONE 2
FH7 CA C SINGLE NONE 3
FH7 CB CG SINGLE NONE 4
FH7 CG CD SINGLE NONE 5
FH7 CD NE SINGLE NONE 6
FH7 NE OZ SINGLE NONE 7
FH7 NE CZ SINGLE NONE 8
FH7 CZ OH DOUBLE NONE 9
FH7 C O DOUBLE NONE 10
FH7 C OXT SINGLE NONE 11
#
_pdbe_chem_comp_substructure.comp_id FH7
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FH7 O F1 1
FH7 C F1 1
FH7 CA F1 1
FH7 N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FH7
_pdbe_chem_comp_rdkit_properties.exactmw 176.080
_pdbe_chem_comp_rdkit_properties.amw 176.172
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 86.678
_pdbe_chem_comp_rdkit_properties.tpsa 103.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.974
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.402
_pdbe_chem_comp_rdkit_properties.chi0v 5.527
_pdbe_chem_comp_rdkit_properties.chi1v 2.466
_pdbe_chem_comp_rdkit_properties.chi2v 0.615
_pdbe_chem_comp_rdkit_properties.chi3v 0.615
_pdbe_chem_comp_rdkit_properties.chi4v 0.212
_pdbe_chem_comp_rdkit_properties.chi0n 17.527
_pdbe_chem_comp_rdkit_properties.chi1n 8.177
_pdbe_chem_comp_rdkit_properties.chi2n 0.615
_pdbe_chem_comp_rdkit_properties.chi3n 0.615
_pdbe_chem_comp_rdkit_properties.chi4n 0.212
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 2.209
_pdbe_chem_comp_rdkit_properties.kappa2 5.503
_pdbe_chem_comp_rdkit_properties.kappa3 4.641
_pdbe_chem_comp_rdkit_properties.Phi 1.013
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FH7 UniChem PDBe FH7
FH7 UniChem ZINC ZINC000058631470
FH7 UniChem PubChem 49866984
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FH7 N -2.154 -1.576 -0.029 ETKDGv3 1
FH7 CA -1.985 -0.364 -0.835 ETKDGv3 2
FH7 CB -0.831 0.502 -0.291 ETKDGv3 3
FH7 CG 0.545 -0.147 -0.503 ETKDGv3 4
FH7 CD 1.672 0.801 -0.077 ETKDGv3 5
FH7 NE 2.978 0.178 -0.298 ETKDGv3 6
FH7 OZ 3.735 0.582 -1.348 ETKDGv3 7
FH7 CZ 3.488 -0.842 0.570 ETKDGv3 8
FH7 OH 2.843 -1.209 1.588 ETKDGv3 9
FH7 C -3.258 0.437 -0.823 ETKDGv3 10
FH7 O -3.824 0.715 0.269 ETKDGv3 11
FH7 OXT -3.798 0.897 -2.020 ETKDGv3 12
FH7 H -3.004 -2.084 -0.367 ETKDGv3 13
FH7 H2 -1.355 -2.221 -0.226 ETKDGv3 14
FH7 HA -1.764 -0.650 -1.889 ETKDGv3 15
FH7 HB1C -0.987 0.693 0.794 ETKDGv3 16
FH7 HB2C -0.842 1.483 -0.817 ETKDGv3 17
FH7 HG1C 0.676 -0.403 -1.577 ETKDGv3 18
FH7 HG2C 0.614 -1.080 0.094 ETKDGv3 19
FH7 HD1C 1.606 1.737 -0.675 ETKDGv3 20
FH7 HD2C 1.564 1.077 0.995 ETKDGv3 21
FH7 HZ 4.445 -1.300 0.356 ETKDGv3 22
FH7 HXT -4.649 1.446 -2.029 ETKDGv3 23
FH7 H11 4.285 1.328 -0.996 ETKDGv3 24
#