data_FER
#
_chem_comp.id FER
_chem_comp.name "3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H10 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "FERULIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 194.184
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FER
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ATJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FER C4 C4 C 0 1 Y N N N N N 2.233 3.236 5.224 -1.039 0.012 2.493 C4 FER 1
FER C5 C5 C 0 1 Y N N N N N 3.315 2.959 4.400 -1.919 0.019 1.418 C5 FER 2
FER C6 C6 C 0 1 Y N N N N N 3.149 2.568 3.099 -1.437 0.013 0.128 C6 FER 3
FER C3 C3 C 0 1 Y N N N N N 0.944 3.110 4.681 0.337 0.009 2.271 C3 FER 4
FER C2 C2 C 0 1 Y N N N N N 0.770 2.713 3.346 0.829 0.004 0.981 C2 FER 5
FER C1 C1 C 0 1 Y N N N N N 1.873 2.431 2.520 -0.056 0.006 -0.101 C1 FER 6
FER C10 C10 C 0 1 N N N N N N -1.323 3.835 5.091 2.517 -0.001 2.784 C10 FER 7
FER C7 C7 C 0 1 N N N N N N 1.757 2.018 1.142 0.461 -0.000 -1.477 C7 FER 8
FER C8 C8 C 0 1 N N N N N N 0.649 1.848 0.476 -0.396 0.001 -2.521 C8 FER 9
FER C9 C9 C 0 1 N N N N N N 0.596 1.421 -0.949 0.103 -0.004 -3.848 C9 FER 10
FER O1 O1 O 0 1 N N N N N N -0.545 1.286 -1.503 1.303 -0.012 -4.046 O1 FER 11
FER O2 O2 O 0 1 N N N N N N 1.734 1.211 -1.537 -0.752 -0.003 -4.891 O2 FER 12
FER O4 O4 O 0 1 N N N N N N 2.444 3.623 6.526 -1.521 0.017 3.762 O4 FER 13
FER O3 O3 O 0 1 N N N N N N -0.039 3.417 5.594 1.195 0.007 3.326 O3 FER 14
FER H5 H5 H 0 1 N N N N N N 4.341 3.052 4.792 -2.984 0.025 1.595 H5 FER 15
FER H6 H6 H 0 1 N N N N N N 4.057 2.360 2.508 -2.123 0.015 -0.704 H6 FER 16
FER H2 H2 H 0 1 N N N N N N -0.251 2.621 2.939 1.895 -0.001 0.809 H2 FER 17
FER H101 1H10 H 0 0 N N N N N N -2.119 4.083 5.830 3.243 -0.003 3.596 H101 FER 18
FER H102 2H10 H 0 0 N N N N N N -1.181 4.699 4.401 2.653 -0.893 2.173 H102 FER 19
FER H103 3H10 H 0 0 N N N N N N -1.708 3.062 4.385 2.663 0.886 2.168 H103 FER 20
FER H7 H7 H 0 1 N N N N N N 2.635 1.802 0.511 1.526 -0.006 -1.653 H7 FER 21
FER H8 H8 H 0 1 N N N N N N -0.229 2.062 1.107 -1.461 0.007 -2.345 H8 FER 22
FER HO2 HO2 H 0 1 N N N N N N 1.700 0.938 -2.446 -0.214 -0.008 -5.694 HO2 FER 23
FER HO4 HO4 H 0 1 N N N N N N 1.703 3.812 7.090 -1.628 -0.906 4.025 HO4 FER 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FER C4 C5 DOUB Y N 1
FER C4 C3 SING Y N 2
FER C4 O4 SING N N 3
FER C5 C6 SING Y N 4
FER C5 H5 SING N N 5
FER C6 C1 DOUB Y N 6
FER C6 H6 SING N N 7
FER C3 C2 DOUB Y N 8
FER C3 O3 SING N N 9
FER C2 C1 SING Y N 10
FER C2 H2 SING N N 11
FER C1 C7 SING N N 12
FER C10 O3 SING N N 13
FER C10 H101 SING N N 14
FER C10 H102 SING N N 15
FER C10 H103 SING N N 16
FER C7 C8 DOUB N E 17
FER C7 H7 SING N N 18
FER C8 C9 SING N N 19
FER C8 H8 SING N N 20
FER C9 O1 DOUB N N 21
FER C9 O2 SING N N 22
FER O2 HO2 SING N N 23
FER O4 HO4 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FER SMILES ACDLabs 10.04 O=C(O)\C=C\c1cc(OC)c(O)cc1
FER SMILES_CANONICAL CACTVS 3.341 COc1cc(\C=C\C(O)=O)ccc1O
FER SMILES CACTVS 3.341 COc1cc(C=CC(O)=O)ccc1O
FER SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COc1cc(ccc1O)\C=C\C(=O)O
FER SMILES "OpenEye OEToolkits" 1.5.0 COc1cc(ccc1O)C=CC(=O)O
FER InChI InChI 1.03 InChI=1S/C10H10O4/c1-14-9-6-7(2-4-8(9)11)3-5-10(12)13/h2-6,11H,1H3,(H,12,13)/b5-3+
FER InChIKey InChI 1.03 KSEBMYQBYZTDHS-HWKANZROSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FER "SYSTEMATIC NAME" ACDLabs 10.04 "(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoic acid"
FER "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(E)-3-(4-hydroxy-3-methoxy-phenyl)prop-2-enoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FER 'Create component' 1999-07-08 RCSB
FER 'Modify descriptor' 2011-06-04 RCSB
FER 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id FER
_pdbx_chem_comp_synonyms.name "FERULIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id FER
_pdbe_chem_comp_drugbank_details.drugbank_id DB07767
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Ferulic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 1135-24-6
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id FER
_pdbe_chem_comp_synonyms.name 'FERULIC ACID'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id FER
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07767
_pdbe_chem_comp_drugbank_classification.parent 'Hydroxycinnamic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Cinnamic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as hydroxycinnamic acids. These are compounds containing an cinnamic acid where the benzene ring is hydroxylated.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
FER DB07767 'Amine oxidase [flavin-containing] B' Humans P27338 unknown 1
FER DB07767 'Carbonic anhydrase 4' Humans P22748 unknown 2
FER DB07767 'Carbonic anhydrase 1' Humans P00915 unknown 3
FER DB07767 'Carbonic anhydrase 6' Humans P23280 unknown 4
FER DB07767 'Carbonic anhydrase 9' Humans Q16790 unknown 5
FER DB07767 'Carbonic anhydrase 14' Humans Q9ULX7 unknown 6
FER DB07767 'Carbonic anhydrase 2' Humans P00918 unknown 7
FER DB07767 'Carbonic anhydrase 12' Humans O43570 unknown 8
FER DB07767 'Endo-1,4-beta-xylanase Y' 'Clostridium thermocellum' P51584 unknown 9
FER DB07767 'Endo-1,4-beta-xylanase Z' 'Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)' P10478 unknown 10
FER DB07767 Est1e 'Butyrivibrio proteoclasticus' D2YW37 unknown 11
FER DB07767 O-methyltransferase 'Synechocystis sp. (strain PCC 6803 / Kazusa)' Q55813 unknown 12
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FER C4 C 6.897 -3.232 1
FER C5 C 8.196 -2.482 2
FER C6 C 8.196 -0.983 3
FER C3 C 5.598 -2.482 4
FER C2 C 5.598 -0.983 5
FER C1 C 6.897 -0.233 6
FER C10 C 3.000 -2.482 7
FER C7 C 6.897 1.268 8
FER C8 C 8.196 2.018 9
FER C9 C 8.196 3.518 10
FER O1 O 9.495 4.268 11
FER O2 O 6.897 4.268 12
FER O4 O 6.897 -4.732 13
FER O3 O 4.299 -3.232 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FER C4 C5 DOUBLE NONE 1
FER C4 C3 SINGLE NONE 2
FER C4 O4 SINGLE NONE 3
FER C5 C6 SINGLE NONE 4
FER C6 C1 DOUBLE NONE 5
FER C3 C2 DOUBLE NONE 6
FER C3 O3 SINGLE NONE 7
FER C2 C1 SINGLE NONE 8
FER C1 C7 SINGLE ENDUPRIGHT 9
FER C10 O3 SINGLE NONE 10
FER C7 C8 DOUBLE NONE 11
FER C8 C9 SINGLE ENDUPRIGHT 12
FER C9 O1 DOUBLE NONE 13
FER C9 O2 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FER MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FER phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FER C4 S1 1
FER C5 S1 1
FER C6 S1 1
FER C3 S1 1
FER C2 S1 1
FER C1 S1 1
FER C4 F1 1
FER C5 F1 1
FER C6 F1 1
FER C1 F1 1
FER C2 F1 1
FER C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FER
_pdbe_chem_comp_rdkit_properties.exactmw 194.058
_pdbe_chem_comp_rdkit_properties.amw 194.186
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 95.288
_pdbe_chem_comp_rdkit_properties.tpsa 66.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.519
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.843
_pdbe_chem_comp_rdkit_properties.chi0v 6.633
_pdbe_chem_comp_rdkit_properties.chi1v 3.271
_pdbe_chem_comp_rdkit_properties.chi2v 1.137
_pdbe_chem_comp_rdkit_properties.chi3v 1.137
_pdbe_chem_comp_rdkit_properties.chi4v 0.625
_pdbe_chem_comp_rdkit_properties.chi0n 16.633
_pdbe_chem_comp_rdkit_properties.chi1n 8.087
_pdbe_chem_comp_rdkit_properties.chi2n 1.137
_pdbe_chem_comp_rdkit_properties.chi3n 1.137
_pdbe_chem_comp_rdkit_properties.chi4n 0.625
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.970
_pdbe_chem_comp_rdkit_properties.kappa1 3.016
_pdbe_chem_comp_rdkit_properties.kappa2 4.318
_pdbe_chem_comp_rdkit_properties.kappa3 2.516
_pdbe_chem_comp_rdkit_properties.Phi 0.930
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FER UniChem DrugBank DB07767
FER UniChem 'PubChem DOTF' 125299308
FER UniChem 'KEGG LIGAND' C01494
FER UniChem ChEBI 17620
FER UniChem ZINC ZINC000000058258
FER UniChem eMolecules 480325
FER UniChem fdasrs AVM951ZWST
FER UniChem HMDB HMDB0000954
FER UniChem Selleck Fumalic-acid(Ferulic-acid)
FER UniChem NMRShiftDB 60005418
FER UniChem LINCS LSM-44126
FER UniChem ACTor 537-98-4
FER UniChem BindingDb 50214744
FER UniChem 'EPA CompTox Dashboard' DTXSID70892035
FER UniChem MetaboLights MTBLC17620
FER UniChem BRENDA 1047
FER UniChem BRENDA 126827
FER UniChem BRENDA 233988
FER UniChem BRENDA 24245
FER UniChem BRENDA 30600
FER UniChem BRENDA 34786
FER UniChem BRENDA 45165
FER UniChem BRENDA 452
FER UniChem BRENDA 67212
FER UniChem BRENDA 7734
FER UniChem BRENDA 93383
FER UniChem BRENDA 95929
FER UniChem ChemicalBook CB0337151
FER UniChem ChemicalBook CB3337152
FER UniChem ClinicalTrials 'SODIUM FERULATE'
FER UniChem rxnorm 'FERULIC ACID'
FER UniChem MedChemExpress HY-N0060
FER UniChem 'Probes And Drugs' PD001909
FER UniChem CCDC GASVOL
FER UniChem Nikkaji J7.273G
FER UniChem SureChEMBL SCHEMBL15673
FER UniChem 'PubChem TPHARMA' 15322326
FER UniChem PubChem 445858
FER UniChem Mcule MCULE-8442047802
FER UniChem ACTor 1135-24-6
FER UniChem ACTor 97274-61-8
FER UniChem Nikkaji J14.707I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FER C4 -1.920 0.426 1.604 ETKDGv3 1
FER C5 -0.849 0.244 2.385 ETKDGv3 2
FER C6 0.465 -0.066 1.792 ETKDGv3 3
FER C3 -1.793 0.306 0.129 ETKDGv3 4
FER C2 -0.587 0.026 -0.409 ETKDGv3 5
FER C1 0.610 -0.155 0.459 ETKDGv3 6
FER C10 -2.983 0.402 -2.078 ETKDGv3 7
FER C7 1.950 -0.466 -0.098 ETKDGv3 8
FER C8 2.307 -0.188 -1.358 ETKDGv3 9
FER C9 3.649 -0.502 -1.873 ETKDGv3 10
FER O1 3.943 -0.199 -3.060 ETKDGv3 11
FER O2 4.595 -1.132 -1.068 ETKDGv3 12
FER O4 -3.148 0.724 2.192 ETKDGv3 13
FER O3 -2.945 0.483 -0.656 ETKDGv3 14
FER H5 -0.940 0.326 3.461 ETKDGv3 15
FER H6 1.312 -0.205 2.453 ETKDGv3 16
FER H2 -0.490 -0.097 -1.477 ETKDGv3 17
FER H101 -2.314 1.169 -2.522 ETKDGv3 18
FER H102 -2.680 -0.612 -2.411 ETKDGv3 19
FER H103 -4.020 0.594 -2.423 ETKDGv3 20
FER H7 2.682 -0.906 0.570 ETKDGv3 21
FER H8 1.621 0.307 -2.031 ETKDGv3 22
FER HO2 5.519 -1.349 -1.424 ETKDGv3 23
FER HO4 -3.983 0.869 1.638 ETKDGv3 24
#