data_FD7
#
_chem_comp.id FD7
_chem_comp.name "N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H22 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-23
_chem_comp.pdbx_modified_date 2019-02-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 262.351
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FD7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CT5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FD7 C10 C1 C 0 1 Y N N N N N -12.423 -42.156 -12.494 1.874 0.185 0.253 C10 FD7 1
FD7 C12 C2 C 0 1 N N N N N N -10.032 -41.957 -11.848 -0.500 0.086 0.124 C12 FD7 2
FD7 C14 C3 C 0 1 N N N N N N -7.597 -41.592 -11.533 -2.851 0.032 -0.111 C14 FD7 3
FD7 C16 C4 C 0 1 N N N N N N -5.118 -41.024 -11.651 -5.295 -0.046 -0.373 C16 FD7 4
FD7 C17 C5 C 0 1 N N N N N N -4.010 -40.676 -12.643 -6.528 0.682 0.167 C17 FD7 5
FD7 C01 C6 C 0 1 N N N N N N -12.191 -44.600 -14.846 2.546 3.313 0.685 C01 FD7 6
FD7 C02 C7 C 0 1 N N N N N N -12.077 -44.534 -13.313 2.316 2.505 -0.594 C02 FD7 7
FD7 C03 C8 C 0 1 Y N N N N N -12.980 -43.438 -12.717 2.739 1.076 -0.369 C03 FD7 8
FD7 C04 C9 C 0 1 Y N N N N N -14.300 -43.647 -12.362 3.987 0.651 -0.781 C04 FD7 9
FD7 C05 C10 C 0 1 Y N N N N N -15.014 -42.592 -11.796 4.376 -0.659 -0.574 C05 FD7 10
FD7 C06 C11 C 0 1 Y N N N N N -14.456 -41.296 -11.582 3.517 -1.549 0.045 C06 FD7 11
FD7 C07 C12 C 0 1 Y N N N N N -13.123 -41.101 -11.928 2.267 -1.130 0.459 C07 FD7 12
FD7 C08 C13 C 0 1 N N N N N N -12.428 -39.745 -11.769 1.332 -2.101 1.133 C08 FD7 13
FD7 C09 C14 C 0 1 N N N N N N -12.588 -39.122 -10.411 0.843 -3.131 0.112 C09 FD7 14
FD7 N11 N1 N 0 1 N N N N N N -11.048 -41.835 -12.845 0.611 0.614 0.676 N11 FD7 15
FD7 N13 N2 N 0 1 N N N N N N -8.790 -41.526 -12.359 -1.713 0.572 0.455 N13 FD7 16
FD7 N15 N3 N 0 1 N N N N N N -6.493 -41.093 -12.297 -4.087 0.528 0.226 N15 FD7 17
FD7 N18 N4 N 0 1 N N N N N N -7.565 -42.021 -10.311 -2.752 -0.948 -0.963 N18 FD7 18
FD7 O19 O1 O 0 1 N N N N N N -10.184 -42.373 -10.772 -0.408 -0.828 -0.671 O19 FD7 19
FD7 H1 H1 H 0 1 N N N N N N -4.892 -42.002 -11.202 -5.358 -1.104 -0.121 H1 FD7 20
FD7 H2 H2 H 0 1 N N N N N N -5.138 -40.255 -10.864 -5.252 0.068 -1.457 H2 FD7 21
FD7 H3 H3 H 0 1 N N N N N N -3.044 -40.641 -12.118 -6.571 0.568 1.250 H3 FD7 22
FD7 H4 H4 H 0 1 N N N N N N -3.971 -41.441 -13.432 -6.464 1.740 -0.085 H4 FD7 23
FD7 H5 H5 H 0 1 N N N N N N -4.217 -39.694 -13.094 -7.426 0.255 -0.279 H5 FD7 24
FD7 H6 H6 H 0 1 N N N N N N -11.532 -45.393 -15.229 2.160 4.323 0.551 H6 FD7 25
FD7 H7 H7 H 0 1 N N N N N N -13.231 -44.820 -15.127 2.029 2.833 1.515 H7 FD7 26
FD7 H8 H8 H 0 1 N N N N N N -11.891 -43.634 -15.278 3.614 3.357 0.899 H8 FD7 27
FD7 H9 H9 H 0 1 N N N N N N -12.373 -45.506 -12.892 1.258 2.534 -0.857 H9 FD7 28
FD7 H10 H10 H 0 1 N N N N N N -11.032 -44.320 -13.043 2.904 2.934 -1.406 H10 FD7 29
FD7 H11 H11 H 0 1 N N N N N N -14.768 -44.607 -12.520 4.660 1.344 -1.265 H11 FD7 30
FD7 H12 H12 H 0 1 N N N N N N -16.040 -42.764 -11.505 5.352 -0.989 -0.897 H12 FD7 31
FD7 H13 H13 H 0 1 N N N N N N -15.048 -40.494 -11.166 3.823 -2.572 0.204 H13 FD7 32
FD7 H14 H14 H 0 1 N N N N N N -11.354 -39.884 -11.959 1.857 -2.611 1.940 H14 FD7 33
FD7 H15 H15 H 0 1 N N N N N N -12.846 -39.054 -12.516 0.478 -1.559 1.540 H15 FD7 34
FD7 H16 H16 H 0 1 N N N N N N -12.061 -38.157 -10.385 0.413 -2.615 -0.747 H16 FD7 35
FD7 H17 H17 H 0 1 N N N N N N -13.657 -38.961 -10.205 1.682 -3.744 -0.215 H17 FD7 36
FD7 H18 H18 H 0 1 N N N N N N -12.164 -39.792 -9.648 0.086 -3.766 0.571 H18 FD7 37
FD7 H19 H19 H 0 1 N N N N N N -10.818 -41.534 -13.770 0.535 1.291 1.367 H19 FD7 38
FD7 H20 H20 H 0 1 N N N N N N -8.731 -41.174 -13.293 -1.786 1.302 1.089 H20 FD7 39
FD7 H21 H21 H 0 1 N N N N N N -6.625 -40.794 -13.242 -4.161 1.258 0.861 H21 FD7 40
FD7 H22 H22 H 0 1 N N N N N N -6.646 -41.971 -9.921 -3.551 -1.328 -1.360 H22 FD7 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FD7 C01 C02 SING N N 1
FD7 C02 C03 SING N N 2
FD7 N11 C10 SING N N 3
FD7 N11 C12 SING N N 4
FD7 C03 C10 DOUB Y N 5
FD7 C03 C04 SING Y N 6
FD7 C17 C16 SING N N 7
FD7 C10 C07 SING Y N 8
FD7 C04 C05 DOUB Y N 9
FD7 N13 C12 SING N N 10
FD7 N13 C14 SING N N 11
FD7 N15 C16 SING N N 12
FD7 N15 C14 SING N N 13
FD7 C07 C08 SING N N 14
FD7 C07 C06 DOUB Y N 15
FD7 C12 O19 DOUB N N 16
FD7 C05 C06 SING Y N 17
FD7 C08 C09 SING N N 18
FD7 C14 N18 DOUB N N 19
FD7 C16 H1 SING N N 20
FD7 C16 H2 SING N N 21
FD7 C17 H3 SING N N 22
FD7 C17 H4 SING N N 23
FD7 C17 H5 SING N N 24
FD7 C01 H6 SING N N 25
FD7 C01 H7 SING N N 26
FD7 C01 H8 SING N N 27
FD7 C02 H9 SING N N 28
FD7 C02 H10 SING N N 29
FD7 C04 H11 SING N N 30
FD7 C05 H12 SING N N 31
FD7 C06 H13 SING N N 32
FD7 C08 H14 SING N N 33
FD7 C08 H15 SING N N 34
FD7 C09 H16 SING N N 35
FD7 C09 H17 SING N N 36
FD7 C09 H18 SING N N 37
FD7 N11 H19 SING N N 38
FD7 N13 H20 SING N N 39
FD7 N15 H21 SING N N 40
FD7 N18 H22 SING N N 41
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FD7 SMILES ACDLabs 12.01 c1(c(cccc1CC)CC)NC(=O)N/C(=N)NCC
FD7 InChI InChI 1.03 InChI=1S/C14H22N4O/c1-4-10-8-7-9-11(5-2)12(10)17-14(19)18-13(15)16-6-3/h7-9H,4-6H2,1-3H3,(H4,15,16,17,18,19)
FD7 InChIKey InChI 1.03 VHGRQUGTHVVVTE-UHFFFAOYSA-N
FD7 SMILES_CANONICAL CACTVS 3.385 CCNC(=N)NC(=O)Nc1c(CC)cccc1CC
FD7 SMILES CACTVS 3.385 CCNC(=N)NC(=O)Nc1c(CC)cccc1CC
FD7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/NCC)\NC(=O)Nc1c(cccc1CC)CC"
FD7 SMILES "OpenEye OEToolkits" 2.0.6 CCc1cccc(c1NC(=O)NC(=N)NCC)CC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FD7 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea"
FD7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-(2,6-diethylphenyl)-3-(~{N}-ethylcarbamimidoyl)urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FD7 'Create component' 2018-03-23 RCSB
FD7 'Initial release' 2019-02-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FD7 C10 C 6.897 -1.732 1
FD7 C12 C 8.196 0.517 2
FD7 C14 C 9.495 2.768 3
FD7 C16 C 12.093 2.768 4
FD7 C17 C 13.392 2.018 5
FD7 C01 C 3.000 -2.482 6
FD7 C02 C 4.299 -1.732 7
FD7 C03 C 5.598 -2.482 8
FD7 C04 C 5.598 -3.982 9
FD7 C05 C 6.897 -4.732 10
FD7 C06 C 8.196 -3.982 11
FD7 C07 C 8.196 -2.482 12
FD7 C08 C 9.495 -1.732 13
FD7 C09 C 10.794 -2.482 14
FD7 N11 N 6.897 -0.233 15
FD7 N13 N 8.196 2.018 16
FD7 N15 N 10.794 2.018 17
FD7 N18 N 9.495 4.268 18
FD7 O19 O 9.495 -0.233 19
FD7 H22 H 8.196 5.018 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FD7 C01 C02 SINGLE NONE 1
FD7 C02 C03 SINGLE NONE 2
FD7 N11 C10 SINGLE NONE 3
FD7 N11 C12 SINGLE NONE 4
FD7 C03 C10 DOUBLE NONE 5
FD7 C03 C04 SINGLE NONE 6
FD7 C17 C16 SINGLE NONE 7
FD7 C10 C07 SINGLE NONE 8
FD7 C04 C05 DOUBLE NONE 9
FD7 N13 C12 SINGLE NONE 10
FD7 N13 C14 SINGLE ENDUPRIGHT 11
FD7 N15 C16 SINGLE NONE 12
FD7 N15 C14 SINGLE ENDDOWNRIGHT 13
FD7 C07 C08 SINGLE NONE 14
FD7 C07 C06 DOUBLE NONE 15
FD7 C12 O19 DOUBLE NONE 16
FD7 C05 C06 SINGLE NONE 17
FD7 C08 C09 SINGLE NONE 18
FD7 C14 N18 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FD7 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FD7 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FD7 C10 S1 1
FD7 C03 S1 1
FD7 C04 S1 1
FD7 C05 S1 1
FD7 C06 S1 1
FD7 C07 S1 1
FD7 C10 F1 1
FD7 C03 F1 1
FD7 C04 F1 1
FD7 C05 F1 1
FD7 C06 F1 1
FD7 C07 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FD7
_pdbe_chem_comp_rdkit_properties.exactmw 262.179
_pdbe_chem_comp_rdkit_properties.amw 262.357
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 144.989
_pdbe_chem_comp_rdkit_properties.tpsa 77.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.987
_pdbe_chem_comp_rdkit_properties.CrippenMR 77.400
_pdbe_chem_comp_rdkit_properties.chi0v 9.197
_pdbe_chem_comp_rdkit_properties.chi1v 4.519
_pdbe_chem_comp_rdkit_properties.chi2v 1.658
_pdbe_chem_comp_rdkit_properties.chi3v 1.658
_pdbe_chem_comp_rdkit_properties.chi4v 0.974
_pdbe_chem_comp_rdkit_properties.chi0n 31.197
_pdbe_chem_comp_rdkit_properties.chi1n 15.308
_pdbe_chem_comp_rdkit_properties.chi2n 1.658
_pdbe_chem_comp_rdkit_properties.chi3n 1.658
_pdbe_chem_comp_rdkit_properties.chi4n 0.974
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.040
_pdbe_chem_comp_rdkit_properties.kappa1 2.846
_pdbe_chem_comp_rdkit_properties.kappa2 7.407
_pdbe_chem_comp_rdkit_properties.kappa3 4.279
_pdbe_chem_comp_rdkit_properties.Phi 1.110
#
_pdbe_chem_comp_external_mappings.comp_id FD7
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 13023375
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FD7 C10 -2.002 0.549 -0.295 ETKDGv3 1
FD7 C12 0.427 0.190 0.207 ETKDGv3 2
FD7 C14 2.923 -0.229 0.520 ETKDGv3 3
FD7 C16 5.453 -0.712 0.520 ETKDGv3 4
FD7 C17 5.453 -2.237 0.486 ETKDGv3 5
FD7 C01 -1.762 3.804 -0.254 ETKDGv3 6
FD7 C02 -1.771 2.764 0.863 ETKDGv3 7
FD7 C03 -2.553 1.539 0.450 ETKDGv3 8
FD7 C04 -3.992 1.471 0.801 ETKDGv3 9
FD7 C05 -4.740 0.439 0.403 ETKDGv3 10
FD7 C06 -4.144 -0.641 -0.401 ETKDGv3 11
FD7 C07 -2.848 -0.594 -0.755 ETKDGv3 12
FD7 C08 -2.253 -1.727 -1.555 ETKDGv3 13
FD7 C09 -1.732 -2.827 -0.636 ETKDGv3 14
FD7 N11 -0.622 0.603 -0.679 ETKDGv3 15
FD7 N13 1.786 0.182 -0.260 ETKDGv3 16
FD7 N15 4.231 -0.180 -0.084 ETKDGv3 17
FD7 N18 2.763 -0.620 1.748 ETKDGv3 18
FD7 O19 0.149 -0.162 1.386 ETKDGv3 19
FD7 H1 5.571 -0.338 1.559 ETKDGv3 20
FD7 H2 6.331 -0.351 -0.059 ETKDGv3 21
FD7 H3 6.401 -2.619 0.919 ETKDGv3 22
FD7 H4 5.370 -2.593 -0.563 ETKDGv3 23
FD7 H5 4.606 -2.646 1.074 ETKDGv3 24
FD7 H6 -1.200 4.702 0.079 ETKDGv3 25
FD7 H7 -2.801 4.107 -0.506 ETKDGv3 26
FD7 H8 -1.270 3.393 -1.161 ETKDGv3 27
FD7 H9 -2.229 3.216 1.770 ETKDGv3 28
FD7 H10 -0.727 2.503 1.134 ETKDGv3 29
FD7 H11 -4.447 2.263 1.383 ETKDGv3 30
FD7 H12 -5.789 0.396 0.667 ETKDGv3 31
FD7 H13 -4.770 -1.473 -0.702 ETKDGv3 32
FD7 H14 -3.016 -2.158 -2.241 ETKDGv3 33
FD7 H15 -1.423 -1.359 -2.195 ETKDGv3 34
FD7 H16 -0.939 -2.432 0.032 ETKDGv3 35
FD7 H17 -1.302 -3.649 -1.247 ETKDGv3 36
FD7 H18 -2.559 -3.238 -0.019 ETKDGv3 37
FD7 H19 -0.393 0.819 -1.675 ETKDGv3 38
FD7 H20 1.959 0.490 -1.243 ETKDGv3 39
FD7 H21 4.319 0.272 -1.022 ETKDGv3 40
FD7 H22 3.543 -0.918 2.372 ETKDGv3 41
#