data_FAE
#
_chem_comp.id FAE
_chem_comp.name "FLAVIN-N7 PROTONATED-ADENINE DINUCLEOTIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H34 N9 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2002-10-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 786.558
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FAE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MXT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FAE PA PA P 0 1 N N N N N N 21.734 0.744 23.210 -3.607 -3.102 -1.090 PA FAE 1
FAE O1A O1A O 0 1 N N N N N N 21.279 -0.550 22.622 -3.838 -4.559 -0.980 O1A FAE 2
FAE O2A O2A O 0 1 N N N N N N 21.110 2.005 22.707 -3.871 -2.629 -2.606 O2A FAE 3
FAE O5B "O5'A" O 0 1 N N N N N N 21.536 0.594 24.781 -4.611 -2.323 -0.102 O5B FAE 4
FAE C5B "C5'A" C 0 1 N N N N N N 21.804 1.644 25.734 -6.029 -2.495 -0.140 C5B FAE 5
FAE C4B "C4'A" C 0 1 N N R N N N 20.975 1.322 26.945 -6.679 -1.611 0.927 C4B FAE 6
FAE O4B "O4'A" O 0 1 N N N N N N 21.440 2.215 28.016 -6.489 -0.226 0.596 O4B FAE 7
FAE C3B "C3'A" C 0 1 N N S N N N 19.455 1.587 26.805 -8.198 -1.869 0.968 C3B FAE 8
FAE O3B "O3'A" O 0 1 N N N N N N 18.669 0.519 27.303 -8.591 -2.338 2.259 O3B FAE 9
FAE C2B "C2'A" C 0 1 N N R N N N 19.254 2.885 27.602 -8.825 -0.484 0.679 C2B FAE 10
FAE O2B "O2'A" O 0 1 N N N N N N 17.943 3.103 28.125 -9.961 -0.255 1.516 O2B FAE 11
FAE C1B "C1'A" C 0 1 N N R N N N 20.314 2.795 28.682 -7.667 0.480 1.043 C1B FAE 12
FAE N9A N9A N 0 1 Y N N N N N 20.743 4.035 29.258 -7.810 1.751 0.329 N9A FAE 13
FAE C8A C8A C 0 1 Y N N N N N 21.136 5.146 28.594 -7.285 2.053 -0.893 C8A FAE 14
FAE N7A N7A N 1 1 Y N N N N N 21.586 6.094 29.381 -7.608 3.269 -1.227 N7A FAE 15
FAE C5A C5AA C 0 1 Y N N N N N 21.497 5.549 30.661 -8.357 3.822 -0.244 C5A FAE 16
FAE C6A C6A C 0 1 Y N N N N N 21.806 6.077 31.931 -8.972 5.072 -0.054 C6A FAE 17
FAE N6A N6A N 0 1 N N N N N N 22.352 7.297 32.097 -8.870 6.064 -1.014 N6A FAE 18
FAE N1A N1A N 0 1 Y N N N N N 21.545 5.294 33.002 -9.653 5.279 1.068 N1A FAE 19
FAE C2A C2A C 0 1 Y N N N N N 20.996 4.116 32.794 -9.756 4.339 1.989 C2A FAE 20
FAE N3A N3A N 0 1 Y N N N N N 20.653 3.492 31.659 -9.197 3.154 1.855 N3A FAE 21
FAE C4A C4AA C 0 1 Y N N N N N 20.952 4.300 30.606 -8.501 2.853 0.764 C4A FAE 22
FAE O3P O3P O 0 1 N N N N N N 23.322 0.915 23.043 -2.086 -2.768 -0.681 O3P FAE 23
FAE N1 N1 N 0 1 N N N N N N 21.130 -2.206 14.328 6.969 1.624 -2.199 N1 FAE 24
FAE C2 C2 C 0 1 N N N N N N 21.381 -3.313 13.642 7.159 2.721 -2.927 C2 FAE 25
FAE O2 O2 O 0 1 N N N N N N 22.537 -3.838 13.583 6.635 2.776 -4.026 O2 FAE 26
FAE N3 N3 N 0 1 N N N N N N 20.355 -4.032 13.040 7.891 3.771 -2.528 N3 FAE 27
FAE C4 C4 C 0 1 N N N N N N 19.061 -3.549 12.923 8.502 3.782 -1.320 C4 FAE 28
FAE O4 O4 O 0 1 N N N N N N 18.195 -4.218 12.343 9.167 4.732 -0.955 O4 FAE 29
FAE C4X C4A C 0 1 N N N N N N 18.863 -2.278 13.478 8.327 2.588 -0.464 C4X FAE 30
FAE N5 N5 N 0 1 N N N N N N 17.608 -1.650 13.327 8.874 2.493 0.721 N5 FAE 31
FAE C5X C5A C 0 1 Y N N N N N 17.371 -0.521 14.119 8.696 1.398 1.471 C5X FAE 32
FAE C6 C6 C 0 1 Y N N N N N 16.115 0.087 14.058 9.294 1.316 2.744 C6 FAE 33
FAE C7 C7 C 0 1 Y N N N N N 15.754 1.097 14.897 9.114 0.203 3.509 C7 FAE 34
FAE C7M C7M C 0 1 N N N N N N 14.364 1.704 14.807 9.756 0.123 4.870 C7M FAE 35
FAE C8 C8 C 0 1 Y N N N N N 16.637 1.514 15.873 8.344 -0.859 3.048 C8 FAE 36
FAE C8M C8M C 0 1 N N N N N N 16.291 2.587 16.881 8.160 -2.079 3.914 C8M FAE 37
FAE C9 C9 C 0 1 Y N N N N N 17.932 0.902 15.933 7.747 -0.808 1.808 C9 FAE 38
FAE C9A C9A C 0 1 Y N N N N N 18.310 -0.051 15.039 7.914 0.317 1.004 C9A FAE 39
FAE N10 N10 N 0 1 N N N N N N 19.622 -0.613 15.025 7.319 0.373 -0.238 N10 FAE 40
FAE C10 C10 C 0 1 N N N N N N 19.895 -1.717 14.257 7.504 1.490 -0.997 C10 FAE 41
FAE "C1'" "C1'" C 0 1 N N N N N N 20.714 -0.015 15.805 6.507 -0.741 -0.731 "C1'" FAE 42
FAE "C2'" "C2'" C 0 1 N N S N N N 21.030 -0.814 17.086 5.049 -0.534 -0.314 "C2'" FAE 43
FAE "O2'" "O2'" O 0 1 N N N N N N 19.806 -1.085 17.779 4.966 -0.478 1.112 "O2'" FAE 44
FAE "C3'" "C3'" C 0 1 N N S N N N 21.998 0.007 17.933 4.201 -1.699 -0.829 "C3'" FAE 45
FAE "O3'" "O3'" O 0 1 N N N N N N 23.152 0.229 17.117 4.285 -1.755 -2.254 "O3'" FAE 46
FAE "C4'" "C4'" C 0 1 N N R N N N 22.412 -0.738 19.216 2.744 -1.492 -0.411 "C4'" FAE 47
FAE "O4'" "O4'" O 0 1 N N N N N N 21.246 -1.026 19.986 2.660 -1.436 1.014 "O4'" FAE 48
FAE "C5'" "C5'" C 0 1 N N N N N N 23.378 0.115 20.010 1.895 -2.656 -0.926 "C5'" FAE 49
FAE "O5'" "O5'" O 0 1 N N N N N N 23.841 -0.662 21.140 0.518 -2.406 -0.638 "O5'" FAE 50
FAE P P P 0 1 N N N N N N 24.515 0.067 22.374 -0.661 -3.426 -1.040 P FAE 51
FAE O1P O1P O 0 1 N N N N N N 24.961 -0.989 23.297 -0.598 -3.706 -2.491 O1P FAE 52
FAE O2P O2P O 0 1 N N N N N N 25.490 1.096 21.907 -0.484 -4.801 -0.220 O2P FAE 53
FAE HOA2 HOA2 H 0 0 N N N N N N 20.468 1.796 22.039 -3.738 -1.682 -2.752 HOA2 FAE 54
FAE H51A H51A H 0 0 N N N N N N 22.873 1.672 25.991 -6.404 -2.211 -1.123 H51A FAE 55
FAE H52A H52A H 0 0 N N N N N N 21.524 2.624 25.321 -6.274 -3.539 0.055 H52A FAE 56
FAE H4B "H4'A" H 0 1 N N N N N N 21.098 0.244 27.127 -6.239 -1.823 1.902 H4B FAE 57
FAE H3B "H3'A" H 0 1 N N N N N N 19.133 1.674 25.757 -8.483 -2.587 0.199 H3B FAE 58
FAE HO3A HO3A H 0 0 N N N N N N 17.748 0.726 27.196 -9.538 -2.516 2.341 HO3A FAE 59
FAE H2B "H2'A" H 0 1 N N N N N N 19.357 3.763 26.948 -9.094 -0.390 -0.373 H2B FAE 60
FAE HO2A HO2A H 0 0 N N N N N N 17.923 3.927 28.598 -10.679 -0.890 1.388 HO2A FAE 61
FAE H1B "H1'A" H 0 1 N N N N N N 19.893 2.230 29.526 -7.630 0.646 2.120 H1B FAE 62
FAE H8A H8A H 0 1 N N N N N N 21.084 5.243 27.520 -6.690 1.382 -1.494 H8A FAE 63
FAE H7A H7A H 0 1 N N N N N N 21.917 7.001 29.122 -7.351 3.710 -2.052 H7A FAE 64
FAE H61A H61A H 0 0 N N N N N N 22.500 7.467 33.071 -8.370 5.900 -1.829 H61A FAE 65
FAE H62A H62A H 0 0 N N N N N N 23.227 7.339 31.615 -9.299 6.922 -0.872 H62A FAE 66
FAE H2A H2A H 0 1 N N N N N N 20.786 3.556 33.693 -10.318 4.549 2.886 H2A FAE 67
FAE HN3 HN3 H 0 1 N N N N N N 20.560 -4.940 12.674 7.985 4.537 -3.115 HN3 FAE 68
FAE H6 H6 H 0 1 N N N N N N 15.405 -0.256 13.320 9.894 2.134 3.113 H6 FAE 69
FAE HM71 HM71 H 0 0 N N N N N N 13.674 1.137 15.449 9.074 0.527 5.618 HM71 FAE 70
FAE HM72 HM72 H 0 0 N N N N N N 14.399 2.751 15.142 9.978 -0.918 5.106 HM72 FAE 71
FAE HM73 HM73 H 0 0 N N N N N N 14.013 1.663 13.765 10.680 0.701 4.870 HM73 FAE 72
FAE HM81 HM81 H 0 0 N N N N N N 15.836 2.124 17.769 7.279 -1.949 4.543 HM81 FAE 73
FAE HM82 HM82 H 0 0 N N N N N N 17.206 3.122 17.175 8.029 -2.957 3.282 HM82 FAE 74
FAE HM83 HM83 H 0 0 N N N N N N 15.579 3.296 16.432 9.039 -2.213 4.544 HM83 FAE 75
FAE H9 H9 H 0 1 N N N N N N 18.623 1.205 16.706 7.151 -1.638 1.459 H9 FAE 76
FAE "H1'1" "H1'1" H 0 0 N N N N N N 21.617 0.010 15.178 6.571 -0.784 -1.819 "H1'1" FAE 77
FAE "H1'2" "H1'2" H 0 0 N N N N N N 20.419 1.004 16.094 6.877 -1.675 -0.309 "H1'2" FAE 78
FAE "H2'" "H2'" H 0 1 N N N N N N 21.503 -1.779 16.854 4.680 0.400 -0.737 "H2'" FAE 79
FAE "HO2'" "HO2'" H 0 0 N N N N N N 19.992 -1.577 18.570 5.279 -1.278 1.556 "HO2'" FAE 80
FAE "H3'" "H3'" H 0 1 N N N N N N 21.520 0.946 18.250 4.571 -2.633 -0.406 "H3'" FAE 81
FAE "HO3'" "HO3'" H 0 0 N N N N N N 23.790 0.740 17.602 3.971 -0.955 -2.699 "HO3'" FAE 82
FAE "H4'" "H4'" H 0 1 N N N N N N 22.913 -1.683 18.957 2.374 -0.558 -0.834 "H4'" FAE 83
FAE "HO4'" "HO4'" H 0 0 N N N N N N 21.406 -0.808 20.897 2.973 -2.235 1.458 "HO4'" FAE 84
FAE "H5'1" "H5'1" H 0 0 N N N N N N 24.231 0.402 19.378 2.029 -2.754 -2.004 "H5'1" FAE 85
FAE "H5'2" "H5'2" H 0 0 N N N N N N 22.871 1.025 20.363 2.208 -3.578 -0.436 "H5'2" FAE 86
FAE HOP2 HOP2 H 0 0 N N N N N N 26.341 0.926 22.295 -0.515 -4.693 0.740 HOP2 FAE 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FAE PA O1A DOUB N N 1
FAE PA O2A SING N N 2
FAE PA O5B SING N N 3
FAE PA O3P SING N N 4
FAE O2A HOA2 SING N N 5
FAE O5B C5B SING N N 6
FAE C5B C4B SING N N 7
FAE C5B H51A SING N N 8
FAE C5B H52A SING N N 9
FAE C4B O4B SING N N 10
FAE C4B C3B SING N N 11
FAE C4B H4B SING N N 12
FAE O4B C1B SING N N 13
FAE C3B O3B SING N N 14
FAE C3B C2B SING N N 15
FAE C3B H3B SING N N 16
FAE O3B HO3A SING N N 17
FAE C2B O2B SING N N 18
FAE C2B C1B SING N N 19
FAE C2B H2B SING N N 20
FAE O2B HO2A SING N N 21
FAE C1B N9A SING N N 22
FAE C1B H1B SING N N 23
FAE N9A C8A SING Y N 24
FAE N9A C4A SING Y N 25
FAE C8A N7A DOUB Y N 26
FAE C8A H8A SING N N 27
FAE N7A C5A SING Y N 28
FAE N7A H7A SING N N 29
FAE C5A C6A DOUB Y N 30
FAE C5A C4A SING Y N 31
FAE C6A N6A SING N N 32
FAE C6A N1A SING Y N 33
FAE N6A H61A SING N N 34
FAE N6A H62A SING N N 35
FAE N1A C2A DOUB Y N 36
FAE C2A N3A SING Y N 37
FAE C2A H2A SING N N 38
FAE N3A C4A DOUB Y N 39
FAE O3P P SING N N 40
FAE N1 C2 SING N N 41
FAE N1 C10 DOUB N N 42
FAE C2 O2 DOUB N N 43
FAE C2 N3 SING N N 44
FAE N3 C4 SING N N 45
FAE N3 HN3 SING N N 46
FAE C4 O4 DOUB N N 47
FAE C4 C4X SING N N 48
FAE C4X N5 DOUB N N 49
FAE C4X C10 SING N N 50
FAE N5 C5X SING N N 51
FAE C5X C6 DOUB Y N 52
FAE C5X C9A SING Y N 53
FAE C6 C7 SING Y N 54
FAE C6 H6 SING N N 55
FAE C7 C7M SING N N 56
FAE C7 C8 DOUB Y N 57
FAE C7M HM71 SING N N 58
FAE C7M HM72 SING N N 59
FAE C7M HM73 SING N N 60
FAE C8 C8M SING N N 61
FAE C8 C9 SING Y N 62
FAE C8M HM81 SING N N 63
FAE C8M HM82 SING N N 64
FAE C8M HM83 SING N N 65
FAE C9 C9A DOUB Y N 66
FAE C9 H9 SING N N 67
FAE C9A N10 SING N N 68
FAE N10 C10 SING N N 69
FAE N10 "C1'" SING N N 70
FAE "C1'" "C2'" SING N N 71
FAE "C1'" "H1'1" SING N N 72
FAE "C1'" "H1'2" SING N N 73
FAE "C2'" "O2'" SING N N 74
FAE "C2'" "C3'" SING N N 75
FAE "C2'" "H2'" SING N N 76
FAE "O2'" "HO2'" SING N N 77
FAE "C3'" "O3'" SING N N 78
FAE "C3'" "C4'" SING N N 79
FAE "C3'" "H3'" SING N N 80
FAE "O3'" "HO3'" SING N N 81
FAE "C4'" "O4'" SING N N 82
FAE "C4'" "C5'" SING N N 83
FAE "C4'" "H4'" SING N N 84
FAE "O4'" "HO4'" SING N N 85
FAE "C5'" "O5'" SING N N 86
FAE "C5'" "H5'1" SING N N 87
FAE "C5'" "H5'2" SING N N 88
FAE "O5'" P SING N N 89
FAE P O1P DOUB N N 90
FAE P O2P SING N N 91
FAE O2P HOP2 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FAE SMILES ACDLabs 12.01 O=C2C3=Nc1cc(c(cc1N(C3=NC(=O)N2)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5c[nH+]c4c(ncnc45)N)C(O)C6O)C)C
FAE SMILES_CANONICAL CACTVS 3.370 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5c[nH+]c6c(N)ncnc56)c2cc1C
FAE SMILES CACTVS 3.370 Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5c[nH+]c6c(N)ncnc56)c2cc1C
FAE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5c[nH+]c6c5ncnc6N)O)O)O)O)O
FAE SMILES "OpenEye OEToolkits" 1.7.0 Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5c[nH+]c6c5ncnc6N)O)O)O)O)O
FAE InChI InChI 1.03 InChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/p+1/t14-,15+,16+,19-,20+,21+,26+/m0/s1
FAE InChIKey InChI 1.03 VWWQXMAJTJZDQX-UYBVJOGSSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FAE "SYSTEMATIC NAME" ACDLabs 12.01 "6-amino-9-[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-9H-purin-7-ium (non-preferred name)"
FAE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[[(2R,3S,4R,5R)-5-(6-azanylpurin-7-ium-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-benzo[g]pteridin-10-yl)-2,3,4-trihydroxy-pentyl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FAE 'Create component' 2002-10-16 RCSB
FAE 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id FAE
_pdbe_chem_comp_drugbank_details.drugbank_id DB02332
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Flavin-N7 protonated-adenine dinucleotide'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id FAE
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02332
_pdbe_chem_comp_drugbank_classification.parent 'Flavin nucleotides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Flavin nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as flavin nucleotides. These are nucleotides containing a flavin moiety. Flavin is a compound that contains the tricyclic isoalloxazine ring system, which bears 2 oxo groups at the 2- and 4-positions.'
#
_pdbe_chem_comp_drugbank_targets.comp_id FAE
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02332
_pdbe_chem_comp_drugbank_targets.name 'Cholesterol oxidase'
_pdbe_chem_comp_drugbank_targets.organism 'Streptomyces sp. (strain SA-COO)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P12676
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
FAE PA P 12.030 2.024 1
FAE O1A O 12.780 3.323 2
FAE O2A O 11.280 0.725 3
FAE O5B O 10.730 2.774 4
FAE C5B C 10.730 4.274 5
FAE C4B C 9.431 5.024 6
FAE O4B O 9.275 6.516 7
FAE C3B C 8.061 4.414 8
FAE O3B O 7.749 2.946 9
FAE C2B C 7.058 5.528 10
FAE O2B O 5.566 5.372 11
FAE C1B C 7.808 6.827 12
FAE N9A N 7.197 8.198 13
FAE C8A C 7.944 9.488 14
FAE N7A N 6.949 10.599 15
FAE C5A C 5.584 9.998 16
FAE C6A C 4.215 10.611 17
FAE N6A N 4.061 12.103 18
FAE N1A N 3.000 9.731 19
FAE C2A C 3.154 8.239 20
FAE N3A N 4.523 7.627 21
FAE C4A C 5.739 8.507 22
FAE O3P O 13.329 1.274 23
FAE N1 N 19.866 -8.424 24
FAE C2 C 21.225 -9.195 25
FAE O2 O 22.521 -8.440 26
FAE N3 N 21.225 -10.757 27
FAE C4 C 19.866 -11.528 28
FAE O4 O 19.848 -13.028 29
FAE C4X C 18.525 -10.726 30
FAE N5 N 17.226 -11.476 31
FAE C5X C 15.927 -10.726 32
FAE C6 C 14.586 -11.528 33
FAE C7 C 13.227 -10.757 34
FAE C7M C 11.930 -11.512 35
FAE C8 C 13.227 -9.195 36
FAE C8M C 11.930 -8.440 37
FAE C9 C 14.586 -8.424 38
FAE C9A C 15.927 -9.226 39
FAE N10 N 17.226 -8.476 40
FAE C10 C 18.525 -9.226 41
FAE "C1'" C 17.226 -6.976 42
FAE "C2'" C 15.927 -6.226 43
FAE "O2'" O 14.627 -6.976 44
FAE "C3'" C 15.927 -4.726 45
FAE "O3'" O 17.226 -3.976 46
FAE "C4'" C 14.627 -3.976 47
FAE "O4'" O 13.329 -4.726 48
FAE "C5'" C 14.627 -2.476 49
FAE "O5'" O 13.329 -1.726 50
FAE P P 13.329 -0.226 51
FAE O1P O 11.829 -0.226 52
FAE O2P O 14.829 -0.226 53
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
FAE PA O1A DOUBLE NONE 1
FAE PA O2A SINGLE BEGINWEDGE 2
FAE PA O5B SINGLE NONE 3
FAE PA O3P SINGLE NONE 4
FAE O5B C5B SINGLE NONE 5
FAE C4B C5B SINGLE BEGINDASH 6
FAE C4B O4B SINGLE NONE 7
FAE C4B C3B SINGLE NONE 8
FAE O4B C1B SINGLE NONE 9
FAE C3B O3B SINGLE BEGINWEDGE 10
FAE C3B C2B SINGLE NONE 11
FAE C2B O2B SINGLE BEGINWEDGE 12
FAE C2B C1B SINGLE NONE 13
FAE C1B N9A SINGLE BEGINDASH 14
FAE N9A C8A SINGLE NONE 15
FAE N9A C4A SINGLE NONE 16
FAE C8A N7A DOUBLE NONE 17
FAE N7A C5A SINGLE NONE 18
FAE C5A C6A DOUBLE NONE 19
FAE C5A C4A SINGLE NONE 20
FAE C6A N6A SINGLE NONE 21
FAE C6A N1A SINGLE NONE 22
FAE N1A C2A DOUBLE NONE 23
FAE C2A N3A SINGLE NONE 24
FAE N3A C4A DOUBLE NONE 25
FAE O3P P SINGLE NONE 26
FAE N1 C2 SINGLE NONE 27
FAE N1 C10 DOUBLE NONE 28
FAE C2 O2 DOUBLE NONE 29
FAE C2 N3 SINGLE NONE 30
FAE N3 C4 SINGLE NONE 31
FAE C4 O4 DOUBLE NONE 32
FAE C4 C4X SINGLE NONE 33
FAE C4X N5 DOUBLE NONE 34
FAE C4X C10 SINGLE NONE 35
FAE N5 C5X SINGLE NONE 36
FAE C5X C6 SINGLE NONE 37
FAE C5X C9A DOUBLE NONE 38
FAE C6 C7 DOUBLE NONE 39
FAE C7 C7M SINGLE NONE 40
FAE C7 C8 SINGLE NONE 41
FAE C8 C8M SINGLE NONE 42
FAE C8 C9 DOUBLE NONE 43
FAE C9 C9A SINGLE NONE 44
FAE C9A N10 SINGLE NONE 45
FAE N10 C10 SINGLE NONE 46
FAE N10 "C1'" SINGLE NONE 47
FAE "C1'" "C2'" SINGLE NONE 48
FAE "C2'" "O2'" SINGLE BEGINDASH 49
FAE "C2'" "C3'" SINGLE NONE 50
FAE "C3'" "O3'" SINGLE BEGINWEDGE 51
FAE "C3'" "C4'" SINGLE NONE 52
FAE "C4'" "O4'" SINGLE BEGINDASH 53
FAE "C4'" "C5'" SINGLE NONE 54
FAE "C5'" "O5'" SINGLE NONE 55
FAE "O5'" P SINGLE NONE 56
FAE P O1P DOUBLE NONE 57
FAE P O2P SINGLE BEGINWEDGE 58
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
FAE MurckoScaffold S1 scaffold 'O=c1nc2n(CCCCCO[PH](=O)O[PH](=O)OC[C@@H]3CC[C@H](n4c[nH+]c5cncnc54)O3)c3ccccc3nc-2c(=O)[nH]1' InChI=1S/C25H28N8O8P2/c34-24-21-23(30-25(35)31-24)32(19-7-3-2-6-17(19)29-21)10-4-1-5-11-38-42(36)41-43(37)39-13-16-8-9-20(40-16)33-15-28-18-12-26-14-27-22(18)33/h2-3,6-7,12,14-16,20,42-43H,1,4-5,8-11,13H2,(H,31,34,35)/p+1/t16-,20+/m0/s1 YAZXWXVECAVPHB-OXJNMPFZSA-O
FAE adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
FAE imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
FAE phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
FAE phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
FAE purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
FAE pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
FAE ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
FAE PA S1 1
FAE O1A S1 1
FAE O5B S1 1
FAE C5B S1 1
FAE C4B S1 1
FAE O4B S1 1
FAE C3B S1 1
FAE C2B S1 1
FAE C1B S1 1
FAE N9A S1 1
FAE C8A S1 1
FAE N7A S1 1
FAE C5A S1 1
FAE C6A S1 1
FAE N1A S1 1
FAE C2A S1 1
FAE N3A S1 1
FAE C4A S1 1
FAE O3P S1 1
FAE N1 S1 1
FAE C2 S1 1
FAE O2 S1 1
FAE N3 S1 1
FAE C4 S1 1
FAE O4 S1 1
FAE C4X S1 1
FAE N5 S1 1
FAE C5X S1 1
FAE C6 S1 1
FAE C7 S1 1
FAE C8 S1 1
FAE C9 S1 1
FAE C9A S1 1
FAE N10 S1 1
FAE C10 S1 1
FAE "C1'" S1 1
FAE "C2'" S1 1
FAE "C3'" S1 1
FAE "C4'" S1 1
FAE "C5'" S1 1
FAE "O5'" S1 1
FAE P S1 1
FAE O1P S1 1
FAE N1A F1 1
FAE C6A F1 1
FAE C5A F1 1
FAE C4A F1 1
FAE N3A F1 1
FAE C2A F1 1
FAE N9A F1 1
FAE C8A F1 1
FAE N7A F1 1
FAE N6A F1 1
FAE C5A F2 1
FAE C4A F2 1
FAE N9A F2 1
FAE C8A F2 1
FAE N7A F2 1
FAE C5X F3 1
FAE C6 F3 1
FAE C7 F3 1
FAE C8 F3 1
FAE C9 F3 1
FAE C9A F3 1
FAE O2A F4 1
FAE PA F4 1
FAE O1A F4 1
FAE O5B F4 1
FAE O3P F4 1
FAE O3P F4 2
FAE P F4 2
FAE O1P F4 2
FAE "O5'" F4 2
FAE O2P F4 2
FAE N7A F5 1
FAE C8A F5 1
FAE N9A F5 1
FAE C4A F5 1
FAE C5A F5 1
FAE C6A F5 1
FAE N1A F5 1
FAE C2A F5 1
FAE N3A F5 1
FAE C5A F6 1
FAE C6A F6 1
FAE N1A F6 1
FAE C2A F6 1
FAE N3A F6 1
FAE C4A F6 1
FAE C2B F7 1
FAE C3B F7 1
FAE C4B F7 1
FAE O4B F7 1
FAE C1B F7 1
FAE C5B F7 1
FAE O5B F7 1
FAE O3B F7 1
FAE O2B F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id FAE
_pdbe_chem_comp_rdkit_properties.exactmw 786.164
_pdbe_chem_comp_rdkit_properties.amw 786.565
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 24
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 11
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 22
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 53
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 26
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.444
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 9
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 343.812
_pdbe_chem_comp_rdkit_properties.tpsa 364.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.932
_pdbe_chem_comp_rdkit_properties.CrippenMR 168.720
_pdbe_chem_comp_rdkit_properties.chi0v 26.332
_pdbe_chem_comp_rdkit_properties.chi1v 15.876
_pdbe_chem_comp_rdkit_properties.chi2v 8.207
_pdbe_chem_comp_rdkit_properties.chi3v 8.207
_pdbe_chem_comp_rdkit_properties.chi4v 5.470
_pdbe_chem_comp_rdkit_properties.chi0n 58.543
_pdbe_chem_comp_rdkit_properties.chi1n 29.101
_pdbe_chem_comp_rdkit_properties.chi2n 5.977
_pdbe_chem_comp_rdkit_properties.chi3n 5.977
_pdbe_chem_comp_rdkit_properties.chi4n 3.834
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.130
_pdbe_chem_comp_rdkit_properties.kappa1 14.504
_pdbe_chem_comp_rdkit_properties.kappa2 14.600
_pdbe_chem_comp_rdkit_properties.kappa3 7.906
_pdbe_chem_comp_rdkit_properties.Phi 3.995
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
FAE UniChem DrugBank DB02332
FAE UniChem 'Probes And Drugs' PD060156
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
FAE PA 2.435 1.579 1.908 ETKDGv3 1
FAE O1A 2.554 0.200 2.519 ETKDGv3 2
FAE O2A 3.015 2.717 3.023 ETKDGv3 3
FAE O5B 3.337 1.642 0.459 ETKDGv3 4
FAE C5B 4.675 1.308 0.747 ETKDGv3 5
FAE C4B 5.506 1.388 -0.537 ETKDGv3 6
FAE O4B 6.861 1.115 -0.242 ETKDGv3 7
FAE C3B 5.016 0.413 -1.608 ETKDGv3 8
FAE O3B 4.180 1.057 -2.535 ETKDGv3 9
FAE C2B 6.302 -0.068 -2.236 ETKDGv3 10
FAE O2B 6.686 0.724 -3.337 ETKDGv3 11
FAE C1B 7.299 0.068 -1.084 ETKDGv3 12
FAE N9A 7.390 -1.183 -0.323 ETKDGv3 13
FAE C8A 7.878 -2.443 -0.838 ETKDGv3 14
FAE N7A 8.282 -3.284 0.076 ETKDGv3 15
FAE C5A 8.126 -2.626 1.323 ETKDGv3 16
FAE C6A 8.491 -2.985 2.554 ETKDGv3 17
FAE N6A 9.071 -4.259 2.837 ETKDGv3 18
FAE N1A 8.295 -2.016 3.610 ETKDGv3 19
FAE C2A 7.810 -0.822 3.359 ETKDGv3 20
FAE N3A 7.459 -0.441 2.008 ETKDGv3 21
FAE C4A 7.601 -1.332 1.075 ETKDGv3 22
FAE O3P 0.792 1.858 1.563 ETKDGv3 23
FAE N1 -4.004 -0.110 2.310 ETKDGv3 24
FAE C2 -3.021 -0.658 3.200 ETKDGv3 25
FAE O2 -2.444 0.090 4.032 ETKDGv3 26
FAE N3 -2.694 -2.050 3.139 ETKDGv3 27
FAE C4 -3.365 -2.880 2.190 ETKDGv3 28
FAE O4 -3.098 -4.110 2.118 ETKDGv3 29
FAE C4X -4.368 -2.272 1.307 ETKDGv3 30
FAE N5 -5.023 -2.986 0.445 ETKDGv3 31
FAE C5X -6.018 -2.427 -0.425 ETKDGv3 32
FAE C6 -6.717 -3.332 -1.358 ETKDGv3 33
FAE C7 -7.652 -2.868 -2.201 ETKDGv3 34
FAE C7M -8.356 -3.815 -3.136 ETKDGv3 35
FAE C8 -8.007 -1.420 -2.172 ETKDGv3 36
FAE C8M -9.045 -0.869 -3.115 ETKDGv3 37
FAE C9 -7.360 -0.594 -1.329 ETKDGv3 38
FAE C9A -6.312 -1.104 -0.396 ETKDGv3 39
FAE N10 -5.604 -0.228 0.530 ETKDGv3 40
FAE C10 -4.635 -0.826 1.421 ETKDGv3 41
FAE "C1'" -5.839 1.231 0.572 ETKDGv3 42
FAE "C2'" -4.976 2.008 -0.456 ETKDGv3 43
FAE "O2'" -5.213 1.539 -1.760 ETKDGv3 44
FAE "C3'" -3.457 2.006 -0.107 ETKDGv3 45
FAE "O3'" -3.264 2.458 1.212 ETKDGv3 46
FAE "C4'" -2.612 2.864 -1.095 ETKDGv3 47
FAE "O4'" -2.733 2.386 -2.412 ETKDGv3 48
FAE "C5'" -1.123 2.902 -0.698 ETKDGv3 49
FAE "O5'" -0.955 3.700 0.451 ETKDGv3 50
FAE P 0.628 3.473 1.043 ETKDGv3 51
FAE O1P 1.627 3.808 -0.044 ETKDGv3 52
FAE O2P 0.856 4.521 2.352 ETKDGv3 53
FAE HOA2 3.367 3.462 2.473 ETKDGv3 54
FAE H51A 4.750 0.275 1.156 ETKDGv3 55
FAE H52A 5.111 2.023 1.481 ETKDGv3 56
FAE H4B 5.450 2.430 -0.926 ETKDGv3 57
FAE H3B 4.487 -0.453 -1.143 ETKDGv3 58
FAE HO3A 3.787 0.343 -3.102 ETKDGv3 59
FAE H2B 6.194 -1.118 -2.581 ETKDGv3 60
FAE HO2A 6.806 1.659 -3.024 ETKDGv3 61
FAE H1B 8.309 0.318 -1.474 ETKDGv3 62
FAE H8A 7.945 -2.664 -1.896 ETKDGv3 63
FAE H7A 8.689 -4.228 -0.104 ETKDGv3 64
FAE H61A 9.216 -4.972 2.089 ETKDGv3 65
FAE H62A 9.353 -4.495 3.814 ETKDGv3 66
FAE H2A 7.679 -0.115 4.166 ETKDGv3 67
FAE HN3 -1.976 -2.455 3.781 ETKDGv3 68
FAE H6 -6.455 -4.384 -1.351 ETKDGv3 69
FAE HM71 -9.405 -3.953 -2.803 ETKDGv3 70
FAE HM72 -7.862 -4.811 -3.167 ETKDGv3 71
FAE HM73 -8.350 -3.404 -4.167 ETKDGv3 72
FAE HM81 -8.639 -0.863 -4.148 ETKDGv3 73
FAE HM82 -9.959 -1.498 -3.085 ETKDGv3 74
FAE HM83 -9.342 0.167 -2.846 ETKDGv3 75
FAE H9 -7.607 0.456 -1.351 ETKDGv3 76
FAE "H1'1" -5.647 1.627 1.592 ETKDGv3 77
FAE "H1'2" -6.911 1.459 0.414 ETKDGv3 78
FAE "H2'" -5.320 3.065 -0.424 ETKDGv3 79
FAE "HO2'" -4.761 0.661 -1.853 ETKDGv3 80
FAE "H3'" -3.086 0.959 -0.160 ETKDGv3 81
FAE "HO3'" -3.608 3.389 1.263 ETKDGv3 82
FAE "H4'" -2.998 3.907 -1.082 ETKDGv3 83
FAE "HO4'" -2.368 1.462 -2.430 ETKDGv3 84
FAE "H5'1" -0.777 1.854 -0.537 ETKDGv3 85
FAE "H5'2" -0.546 3.346 -1.541 ETKDGv3 86
FAE HOP2 0.197 4.224 3.029 ETKDGv3 87
#