data_EWD
#
_chem_comp.id EWD
_chem_comp.name "2-phenoxy-5-(1H-pyrazol-4-yl)benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-06
_chem_comp.pdbx_modified_date 2018-03-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 280.278
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EWD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CBF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EWD C14 C1 C 0 1 Y N N N N N 12.970 9.770 2.904 1.911 0.370 0.007 C14 EWD 1
EWD C15 C2 C 0 1 Y N N N N N 12.894 10.155 1.567 0.880 1.311 0.012 C15 EWD 2
EWD C16 C3 C 0 1 Y N N N N N 11.682 10.109 0.872 -0.436 0.899 0.012 C16 EWD 3
EWD C17 C4 C 0 1 Y N N N N N 10.523 9.679 1.516 -0.745 -0.453 0.008 C17 EWD 4
EWD C18 C5 C 0 1 Y N N N N N 10.619 9.282 2.849 0.284 -1.406 0.003 C18 EWD 5
EWD C19 C6 C 0 1 Y N N N N N 11.824 9.329 3.540 1.615 -0.987 0.002 C19 EWD 6
EWD C20 C7 C 0 1 Y N N N N N 14.263 9.815 3.638 3.326 0.821 0.000 C20 EWD 7
EWD C21 C8 C 0 1 Y N N N N N 14.439 10.011 5.001 3.760 2.115 0.004 C21 EWD 8
EWD N22 N1 N 0 1 Y N N N N N 15.761 9.984 5.275 5.109 2.093 -0.005 N22 EWD 9
EWD N23 N2 N 0 1 Y N N N N N 16.404 9.761 4.060 5.524 0.756 -0.014 N23 EWD 10
EWD C24 C9 C 0 1 Y N N N N N 15.512 9.656 3.068 4.464 -0.009 -0.004 C24 EWD 11
EWD C25 C10 C 0 1 N N N N N N 9.426 8.814 3.617 -0.038 -2.845 -0.000 C25 EWD 12
EWD O26 O1 O 0 1 N N N N N N 9.115 7.607 3.572 -1.198 -3.207 0.001 O26 EWD 13
EWD O27 O2 O 0 1 N N N N N N 8.802 9.657 4.299 0.953 -3.758 -0.005 O27 EWD 14
EWD O28 O3 O 0 1 N N N N N N 9.315 9.595 0.841 -2.041 -0.854 0.010 O28 EWD 15
EWD C29 C11 C 0 1 Y N N N N N 8.518 10.623 0.367 -3.005 0.104 0.002 C29 EWD 16
EWD C30 C12 C 0 1 Y N N N N N 8.485 11.891 0.965 -3.496 0.586 -1.202 C30 EWD 17
EWD C31 C13 C 0 1 Y N N N N N 7.653 12.883 0.442 -4.476 1.560 -1.207 C31 EWD 18
EWD C32 C14 C 0 1 Y N N N N N 6.851 12.614 -0.670 -4.967 2.055 -0.012 C32 EWD 19
EWD C33 C15 C 0 1 Y N N N N N 6.873 11.354 -1.262 -4.478 1.576 1.190 C33 EWD 20
EWD C34 C16 C 0 1 Y N N N N N 7.699 10.361 -0.739 -3.503 0.598 1.200 C34 EWD 21
EWD H1 H1 H 0 1 N N N N N N 13.785 10.494 1.060 1.114 2.365 0.016 H1 EWD 22
EWD H2 H2 H 0 1 N N N N N N 11.644 10.407 -0.165 -1.229 1.633 0.016 H2 EWD 23
EWD H3 H3 H 0 1 N N N N N N 11.865 9.021 4.574 2.413 -1.715 -0.005 H3 EWD 24
EWD H4 H4 H 0 1 N N N N N N 13.649 10.160 5.723 3.136 2.996 0.011 H4 EWD 25
EWD H5 H5 H 0 1 N N N N N N 16.192 10.101 6.170 5.690 2.869 -0.005 H5 EWD 26
EWD H6 H6 H 0 1 N N N N N N 15.727 9.481 2.024 4.461 -1.089 -0.003 H6 EWD 27
EWD H7 H7 H 0 1 N N N N N N 8.085 9.230 4.753 0.692 -4.689 -0.007 H7 EWD 28
EWD H8 H8 H 0 1 N N N N N N 9.101 12.100 1.827 -3.113 0.201 -2.135 H8 EWD 29
EWD H9 H9 H 0 1 N N N N N N 7.629 13.861 0.899 -4.859 1.936 -2.144 H9 EWD 30
EWD H10 H10 H 0 1 N N N N N N 6.212 13.386 -1.072 -5.733 2.816 -0.018 H10 EWD 31
EWD H11 H11 H 0 1 N N N N N N 6.253 11.147 -2.122 -4.866 1.961 2.121 H11 EWD 32
EWD H12 H12 H 0 1 N N N N N N 7.708 9.380 -1.191 -3.122 0.224 2.139 H12 EWD 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EWD C33 C34 DOUB Y N 1
EWD C33 C32 SING Y N 2
EWD C34 C29 SING Y N 3
EWD C32 C31 DOUB Y N 4
EWD C29 O28 SING N N 5
EWD C29 C30 DOUB Y N 6
EWD C31 C30 SING Y N 7
EWD O28 C17 SING N N 8
EWD C16 C17 DOUB Y N 9
EWD C16 C15 SING Y N 10
EWD C17 C18 SING Y N 11
EWD C15 C14 DOUB Y N 12
EWD C18 C19 DOUB Y N 13
EWD C18 C25 SING N N 14
EWD C14 C19 SING Y N 15
EWD C14 C20 SING N N 16
EWD C24 C20 SING Y N 17
EWD C24 N23 DOUB Y N 18
EWD O26 C25 DOUB N N 19
EWD C25 O27 SING N N 20
EWD C20 C21 DOUB Y N 21
EWD N23 N22 SING Y N 22
EWD C21 N22 SING Y N 23
EWD C15 H1 SING N N 24
EWD C16 H2 SING N N 25
EWD C19 H3 SING N N 26
EWD C21 H4 SING N N 27
EWD N22 H5 SING N N 28
EWD C24 H6 SING N N 29
EWD O27 H7 SING N N 30
EWD C30 H8 SING N N 31
EWD C31 H9 SING N N 32
EWD C32 H10 SING N N 33
EWD C33 H11 SING N N 34
EWD C34 H12 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EWD SMILES ACDLabs 12.01 c1(cc(c(cc1)Oc2ccccc2)C(O)=O)c3cnnc3
EWD InChI InChI 1.03 InChI=1S/C16H12N2O3/c19-16(20)14-8-11(12-9-17-18-10-12)6-7-15(14)21-13-4-2-1-3-5-13/h1-10H,(H,17,18)(H,19,20)
EWD InChIKey InChI 1.03 GTIPHUDSAYUQQM-UHFFFAOYSA-N
EWD SMILES_CANONICAL CACTVS 3.385 OC(=O)c1cc(ccc1Oc2ccccc2)c3c[nH]nc3
EWD SMILES CACTVS 3.385 OC(=O)c1cc(ccc1Oc2ccccc2)c3c[nH]nc3
EWD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)Oc2ccc(cc2C(=O)O)c3c[nH]nc3
EWD SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)Oc2ccc(cc2C(=O)O)c3c[nH]nc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EWD "SYSTEMATIC NAME" ACDLabs 12.01 "2-phenoxy-5-(1H-pyrazol-4-yl)benzoic acid"
EWD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-phenoxy-5-(1~{H}-pyrazol-4-yl)benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EWD 'Create component' 2018-02-06 RCSB
EWD 'Initial release' 2018-04-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EWD C14 C 10.794 -1.438 1
EWD C15 C 9.495 -2.188 2
EWD C16 C 8.196 -1.438 3
EWD C17 C 8.196 0.062 4
EWD C18 C 9.495 0.812 5
EWD C19 C 10.794 0.062 6
EWD C20 C 12.093 -2.188 7
EWD C21 C 12.250 -3.680 8
EWD N22 N 13.717 -3.992 9
EWD N23 N 14.467 -2.693 10
EWD C24 C 13.463 -1.578 11
EWD C25 C 9.495 2.312 12
EWD O26 O 10.794 3.062 13
EWD O27 O 8.196 3.062 14
EWD O28 O 6.897 0.812 15
EWD C29 C 5.598 0.062 16
EWD C30 C 5.598 -1.438 17
EWD C31 C 4.299 -2.188 18
EWD C32 C 3.000 -1.438 19
EWD C33 C 3.000 0.062 20
EWD C34 C 4.299 0.812 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EWD C33 C34 DOUBLE NONE 1
EWD C33 C32 SINGLE NONE 2
EWD C34 C29 SINGLE NONE 3
EWD C32 C31 DOUBLE NONE 4
EWD C29 O28 SINGLE NONE 5
EWD C29 C30 DOUBLE NONE 6
EWD C31 C30 SINGLE NONE 7
EWD O28 C17 SINGLE NONE 8
EWD C16 C17 SINGLE NONE 9
EWD C16 C15 DOUBLE NONE 10
EWD C17 C18 DOUBLE NONE 11
EWD C15 C14 SINGLE NONE 12
EWD C18 C19 SINGLE NONE 13
EWD C18 C25 SINGLE NONE 14
EWD C14 C19 DOUBLE NONE 15
EWD C14 C20 SINGLE NONE 16
EWD C24 C20 SINGLE NONE 17
EWD C24 N23 DOUBLE NONE 18
EWD O26 C25 DOUBLE NONE 19
EWD C25 O27 SINGLE NONE 20
EWD C20 C21 DOUBLE NONE 21
EWD N23 N22 SINGLE NONE 22
EWD C21 N22 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EWD MurckoScaffold S1 scaffold 'c1ccc(Oc2ccc(-c3cn[nH]c3)cc2)cc1' InChI=1S/C15H12N2O/c1-2-4-14(5-3-1)18-15-8-6-12(7-9-15)13-10-16-17-11-13/h1-11H,(H,16,17) WYGQJMMGMAKOMR-UHFFFAOYSA-N
EWD phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
EWD pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EWD C14 S1 1
EWD C15 S1 1
EWD C16 S1 1
EWD C17 S1 1
EWD C18 S1 1
EWD C19 S1 1
EWD C20 S1 1
EWD C21 S1 1
EWD N22 S1 1
EWD N23 S1 1
EWD C24 S1 1
EWD O28 S1 1
EWD C29 S1 1
EWD C30 S1 1
EWD C31 S1 1
EWD C32 S1 1
EWD C33 S1 1
EWD C34 S1 1
EWD C14 F1 1
EWD C15 F1 1
EWD C16 F1 1
EWD C17 F1 1
EWD C18 F1 1
EWD C19 F1 1
EWD C29 F1 2
EWD C34 F1 2
EWD C33 F1 2
EWD C32 F1 2
EWD C31 F1 2
EWD C30 F1 2
EWD C21 F2 1
EWD C20 F2 1
EWD C24 F2 1
EWD N23 F2 1
EWD N22 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id EWD
_pdbe_chem_comp_rdkit_properties.exactmw 280.085
_pdbe_chem_comp_rdkit_properties.amw 280.283
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 137.381
_pdbe_chem_comp_rdkit_properties.tpsa 75.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.208
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.691
_pdbe_chem_comp_rdkit_properties.chi0v 10.119
_pdbe_chem_comp_rdkit_properties.chi1v 5.464
_pdbe_chem_comp_rdkit_properties.chi2v 2.287
_pdbe_chem_comp_rdkit_properties.chi3v 2.287
_pdbe_chem_comp_rdkit_properties.chi4v 1.418
_pdbe_chem_comp_rdkit_properties.chi0n 22.119
_pdbe_chem_comp_rdkit_properties.chi1n 11.319
_pdbe_chem_comp_rdkit_properties.chi2n 2.287
_pdbe_chem_comp_rdkit_properties.chi3n 2.287
_pdbe_chem_comp_rdkit_properties.chi4n 1.418
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.080
_pdbe_chem_comp_rdkit_properties.kappa1 5.035
_pdbe_chem_comp_rdkit_properties.kappa2 5.501
_pdbe_chem_comp_rdkit_properties.kappa3 2.763
_pdbe_chem_comp_rdkit_properties.Phi 1.319
#
_pdbe_chem_comp_external_mappings.comp_id EWD
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 132473014
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EWD C14 -2.258 0.513 0.268 ETKDGv3 1
EWD C15 -1.074 1.369 0.509 ETKDGv3 2
EWD C16 0.139 0.828 0.646 ETKDGv3 3
EWD C17 0.331 -0.641 0.550 ETKDGv3 4
EWD C18 -0.744 -1.442 0.357 ETKDGv3 5
EWD C19 -2.090 -0.822 0.202 ETKDGv3 6
EWD C20 -3.596 1.137 0.103 ETKDGv3 7
EWD C21 -4.782 0.539 0.163 ETKDGv3 8
EWD N22 -5.790 1.516 -0.033 ETKDGv3 9
EWD N23 -5.159 2.748 -0.218 ETKDGv3 10
EWD C24 -3.883 2.557 -0.142 ETKDGv3 11
EWD C25 -0.625 -2.922 0.277 ETKDGv3 12
EWD O26 -1.660 -3.630 0.145 ETKDGv3 13
EWD O27 0.615 -3.552 0.340 ETKDGv3 14
EWD O28 1.609 -1.194 0.715 ETKDGv3 15
EWD C29 2.805 -0.596 0.296 ETKDGv3 16
EWD C30 3.942 -0.900 0.938 ETKDGv3 17
EWD C31 5.224 -0.296 0.518 ETKDGv3 18
EWD C32 5.259 0.548 -0.520 ETKDGv3 19
EWD C33 4.017 0.868 -1.253 ETKDGv3 20
EWD C34 2.854 0.325 -0.872 ETKDGv3 21
EWD H1 -1.180 2.442 0.602 ETKDGv3 22
EWD H2 0.983 1.473 0.856 ETKDGv3 23
EWD H3 -2.937 -1.467 0.012 ETKDGv3 24
EWD H4 -4.977 -0.508 0.353 ETKDGv3 25
EWD H5 -6.823 1.366 -0.035 ETKDGv3 26
EWD H6 -3.160 3.352 -0.260 ETKDGv3 27
EWD H7 0.691 -4.561 0.283 ETKDGv3 28
EWD H8 3.927 -1.584 1.778 ETKDGv3 29
EWD H9 6.134 -0.538 1.052 ETKDGv3 30
EWD H10 6.197 0.990 -0.830 ETKDGv3 31
EWD H11 4.053 1.535 -2.105 ETKDGv3 32
EWD H12 1.956 0.545 -1.435 ETKDGv3 33
#