data_EU7
#
_chem_comp.id EU7
_chem_comp.name (1S)-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H21 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms S-RIMANTADINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-01-31
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 179.302
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code EU7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BOC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EU7 CA C1 C 0 1 N N N N N N 0.736 -44.499 16.514 2.795 1.264 -0.151 CA EU7 1
EU7 CB C2 C 0 1 N N S N N N -0.597 -44.868 17.174 2.187 -0.007 0.445 CB EU7 2
EU7 NC N1 N 0 1 N N N N N N -1.635 -43.925 16.741 2.776 -1.184 -0.207 NC EU7 3
EU7 CD C3 C 0 1 N N N N N N -0.443 -44.797 18.698 0.673 -0.004 0.219 CD EU7 4
EU7 CE1 C4 C 0 1 N N N N N N 0.638 -45.778 19.148 0.065 -1.275 0.815 CE1 EU7 5
EU7 CE2 C5 C 0 1 N N N N N N -0.047 -43.378 19.104 0.060 1.222 0.899 CE2 EU7 6
EU7 CE3 C6 C 0 1 N N N N N N -1.774 -45.164 19.359 0.382 0.046 -1.282 CE3 EU7 7
EU7 CF1 C7 C 0 1 N N N N N N 0.789 -45.708 20.668 -1.448 -1.271 0.589 CF1 EU7 8
EU7 CF2 C8 C 0 1 N N N N N N 0.106 -43.306 20.623 -1.454 1.226 0.673 CF2 EU7 9
EU7 CF3 C9 C 0 1 N N N N N N -1.622 -45.093 20.879 -1.131 0.050 -1.508 CF3 EU7 10
EU7 CG1 C10 C 0 1 N N N N N N 1.187 -44.288 21.076 -2.062 -0.045 1.268 CG1 EU7 11
EU7 CG2 C11 C 0 1 N N N N N N -1.226 -43.675 21.287 -1.745 1.276 -0.829 CG2 EU7 12
EU7 CG3 C12 C 0 1 N N N N N N -0.538 -46.075 21.329 -1.739 -1.221 -0.912 CG3 EU7 13
EU7 HA3 H1 H 0 1 N N N N N N 1.514 -45.206 16.838 2.587 1.299 -1.220 HA3 EU7 14
EU7 HA2 H2 H 0 1 N N N N N N 0.629 -44.548 15.420 2.357 2.137 0.333 HA2 EU7 15
EU7 HA1 H3 H 0 1 N N N N N N 1.021 -43.479 16.809 3.873 1.261 0.010 HA1 EU7 16
EU7 HB H4 H 0 1 N N N N N N -0.873 -45.893 16.885 2.394 -0.043 1.515 HB EU7 17
EU7 HNC2 H5 H 0 0 N N N N N N -2.505 -44.165 17.171 3.776 -1.210 -0.072 HNC2 EU7 18
EU7 HNC3 H6 H 0 0 N N N N N N -1.375 -42.997 17.010 2.345 -2.035 0.123 HNC3 EU7 19
EU7 HE12 H8 H 0 0 N N N N N N 0.352 -46.799 18.855 0.503 -2.148 0.331 HE12 EU7 20
EU7 HE11 H9 H 0 0 N N N N N N 1.594 -45.514 18.672 0.273 -1.310 1.884 HE11 EU7 21
EU7 HE22 H10 H 0 0 N N N N N N 0.908 -43.113 18.626 0.267 1.187 1.968 HE22 EU7 22
EU7 HE21 H11 H 0 0 N N N N N N -0.827 -42.673 18.780 0.493 2.128 0.474 HE21 EU7 23
EU7 HE32 H12 H 0 0 N N N N N N -2.552 -44.458 19.034 0.815 0.952 -1.707 HE32 EU7 24
EU7 HE31 H13 H 0 0 N N N N N N -2.060 -46.185 19.066 0.819 -0.827 -1.766 HE31 EU7 25
EU7 HF1 H14 H 0 1 N N N N N N 1.568 -46.414 20.992 -1.881 -2.176 1.013 HF1 EU7 26
EU7 HF2 H15 H 0 1 N N N N N N 0.391 -42.285 20.916 -1.891 2.100 1.157 HF2 EU7 27
EU7 HF3 H16 H 0 1 N N N N N N -2.577 -45.358 21.356 -1.339 0.086 -2.578 HF3 EU7 28
EU7 HG12 H17 H 0 0 N N N N N N 1.294 -44.237 22.170 -3.140 -0.042 1.107 HG12 EU7 29
EU7 HG11 H18 H 0 0 N N N N N N 2.144 -44.025 20.601 -1.854 -0.080 2.338 HG11 EU7 30
EU7 HG22 H19 H 0 0 N N N N N N -1.117 -43.625 22.380 -2.823 1.279 -0.990 HG22 EU7 31
EU7 HG21 H20 H 0 0 N N N N N N -2.005 -42.969 20.963 -1.312 2.182 -1.253 HG21 EU7 32
EU7 HG32 H21 H 0 0 N N N N N N -0.824 -47.096 21.036 -1.302 -2.094 -1.396 HG32 EU7 33
EU7 HG31 H22 H 0 0 N N N N N N -0.429 -46.025 22.422 -2.817 -1.218 -1.073 HG31 EU7 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EU7 CA CB SING N N 1
EU7 CB NC SING N N 2
EU7 CB CD SING N N 3
EU7 CD CE1 SING N N 4
EU7 CD CE2 SING N N 5
EU7 CD CE3 SING N N 6
EU7 CE1 CF1 SING N N 7
EU7 CE2 CF2 SING N N 8
EU7 CE3 CF3 SING N N 9
EU7 CF1 CG1 SING N N 10
EU7 CF1 CG3 SING N N 11
EU7 CF2 CG1 SING N N 12
EU7 CF2 CG2 SING N N 13
EU7 CF3 CG2 SING N N 14
EU7 CF3 CG3 SING N N 15
EU7 CA HA3 SING N N 16
EU7 CA HA2 SING N N 17
EU7 CA HA1 SING N N 18
EU7 CB HB SING N N 19
EU7 NC HNC2 SING N N 20
EU7 NC HNC3 SING N N 21
EU7 CE1 HE12 SING N N 22
EU7 CE1 HE11 SING N N 23
EU7 CE2 HE22 SING N N 24
EU7 CE2 HE21 SING N N 25
EU7 CE3 HE32 SING N N 26
EU7 CE3 HE31 SING N N 27
EU7 CF1 HF1 SING N N 28
EU7 CF2 HF2 SING N N 29
EU7 CF3 HF3 SING N N 30
EU7 CG1 HG12 SING N N 31
EU7 CG1 HG11 SING N N 32
EU7 CG2 HG22 SING N N 33
EU7 CG2 HG21 SING N N 34
EU7 CG3 HG32 SING N N 35
EU7 CG3 HG31 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EU7 SMILES ACDLabs 12.01 CC(N)C12CC3CC(C1)CC(C2)C3
EU7 InChI InChI 1.03 InChI=1S/C12H21N/c1-8(13)12-5-9-2-10(6-12)4-11(3-9)7-12/h8-11H,2-7,13H2,1H3/t8-,9-,10+,11-,12-/m0/s1
EU7 InChIKey InChI 1.03 UBCHPRBFMUDMNC-SVNGYHJRSA-N
EU7 SMILES_CANONICAL CACTVS 3.385 C[C@H](N)C12CC3CC(CC(C3)C1)C2
EU7 SMILES CACTVS 3.385 C[CH](N)C12CC3CC(CC(C3)C1)C2
EU7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H](C12CC3CC(C1)CC(C3)C2)N
EU7 SMILES "OpenEye OEToolkits" 2.0.6 CC(C12CC3CC(C1)CC(C3)C2)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EU7 "SYSTEMATIC NAME" ACDLabs 12.01 (1S)-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-amine
EU7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (1~{S})-1-(1-adamantyl)ethanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EU7 'Create component' 2018-01-31 RCSB
EU7 'Initial release' 2018-09-19 RCSB
EU7 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id EU7
_pdbx_chem_comp_synonyms.name S-RIMANTADINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id EU7
_pdbe_chem_comp_synonyms.name S-RIMANTADINE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
EU7 CA C -0.202 3.338 1
EU7 CB C 0.862 2.281 2
EU7 NC N 2.309 2.673 3
EU7 CD C 0.478 0.831 4
EU7 CE1 C 1.721 -0.006 5
EU7 CE2 C -1.007 0.718 6
EU7 CE3 C -0.585 -0.008 7
EU7 CF1 C 1.302 -1.576 8
EU7 CF2 C -1.425 -0.847 9
EU7 CF3 C -1.003 -1.590 10
EU7 CG1 C -0.194 -1.684 11
EU7 CG2 C -2.500 -1.699 12
EU7 CG3 C 0.244 -2.433 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
EU7 CB CA SINGLE BEGINDASH 1
EU7 CB NC SINGLE NONE 2
EU7 CB CD SINGLE NONE 3
EU7 CD CE1 SINGLE BEGINWEDGE 4
EU7 CD CE2 SINGLE NONE 5
EU7 CD CE3 SINGLE NONE 6
EU7 CE1 CF1 SINGLE NONE 7
EU7 CE2 CF2 SINGLE NONE 8
EU7 CE3 CF3 SINGLE NONE 9
EU7 CF1 CG1 SINGLE NONE 10
EU7 CF1 CG3 SINGLE NONE 11
EU7 CF2 CG1 SINGLE NONE 12
EU7 CF2 CG2 SINGLE NONE 13
EU7 CF3 CG2 SINGLE NONE 14
EU7 CF3 CG3 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
EU7 MurckoScaffold S1 scaffold C1C2CC3CC1CC(C2)C3 InChI=1S/C10H16/c1-7-2-9-4-8(1)5-10(3-7)6-9/h7-10H,1-6H2/t7-,8+,9-,10+ ORILYTVJVMAKLC-YNFQOJQRSA-N
EU7 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
EU7 CD S1 1
EU7 CE1 S1 1
EU7 CE2 S1 1
EU7 CE3 S1 1
EU7 CF1 S1 1
EU7 CF2 S1 1
EU7 CF3 S1 1
EU7 CG1 S1 1
EU7 CG2 S1 1
EU7 CG3 S1 1
EU7 CD F1 1
EU7 CE1 F1 1
EU7 CF1 F1 1
EU7 CG1 F1 1
EU7 CF2 F1 1
EU7 CE2 F1 1
EU7 CD F1 2
EU7 CE1 F1 2
EU7 CF1 F1 2
EU7 CG3 F1 2
EU7 CF3 F1 2
EU7 CE3 F1 2
EU7 CD F1 3
EU7 CE2 F1 3
EU7 CF2 F1 3
EU7 CG2 F1 3
EU7 CF3 F1 3
EU7 CE3 F1 3
EU7 CF1 F1 4
EU7 CG1 F1 4
EU7 CF2 F1 4
EU7 CG2 F1 4
EU7 CF3 F1 4
EU7 CG3 F1 4
#
_pdbe_chem_comp_rdkit_properties.comp_id EU7
_pdbe_chem_comp_rdkit_properties.exactmw 179.167
_pdbe_chem_comp_rdkit_properties.amw 179.307
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 110.697
_pdbe_chem_comp_rdkit_properties.tpsa 26.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.550
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.254
_pdbe_chem_comp_rdkit_properties.chi0v 6.447
_pdbe_chem_comp_rdkit_properties.chi1v 3.724
_pdbe_chem_comp_rdkit_properties.chi2v 2.043
_pdbe_chem_comp_rdkit_properties.chi3v 2.043
_pdbe_chem_comp_rdkit_properties.chi4v 1.490
_pdbe_chem_comp_rdkit_properties.chi0n 27.447
_pdbe_chem_comp_rdkit_properties.chi1n 14.118
_pdbe_chem_comp_rdkit_properties.chi2n 2.043
_pdbe_chem_comp_rdkit_properties.chi3n 2.043
_pdbe_chem_comp_rdkit_properties.chi4n 1.490
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.040
_pdbe_chem_comp_rdkit_properties.kappa1 1.434
_pdbe_chem_comp_rdkit_properties.kappa2 2.503
_pdbe_chem_comp_rdkit_properties.kappa3 1.092
_pdbe_chem_comp_rdkit_properties.Phi 0.276
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
EU7 CA 3.035 -0.730 -0.652 ETKDGv3 1
EU7 CB 2.255 0.265 0.223 ETKDGv3 2
EU7 NC 2.757 0.152 1.598 ETKDGv3 3
EU7 CD 0.683 0.138 0.115 ETKDGv3 4
EU7 CE1 -0.006 1.067 1.165 ETKDGv3 5
EU7 CE2 0.214 0.598 -1.302 ETKDGv3 6
EU7 CE3 0.175 -1.321 0.344 ETKDGv3 7
EU7 CF1 -1.542 0.995 1.039 ETKDGv3 8
EU7 CF2 -1.324 0.527 -1.422 ETKDGv3 9
EU7 CF3 -1.365 -1.382 0.223 ETKDGv3 10
EU7 CG1 -1.966 1.452 -0.370 ETKDGv3 11
EU7 CG2 -1.790 -0.925 -1.189 ETKDGv3 12
EU7 CG3 -2.007 -0.457 1.277 ETKDGv3 13
EU7 HA3 2.890 -1.771 -0.298 ETKDGv3 14
EU7 HA2 4.120 -0.502 -0.588 ETKDGv3 15
EU7 HA1 2.747 -0.656 -1.719 ETKDGv3 16
EU7 HB 2.533 1.280 -0.145 ETKDGv3 17
EU7 HNC2 2.545 1.029 2.127 ETKDGv3 18
EU7 HNC3 2.314 -0.655 2.090 ETKDGv3 19
EU7 HE12 0.265 0.763 2.199 ETKDGv3 20
EU7 HE11 0.331 2.118 1.028 ETKDGv3 21
EU7 HE22 0.550 1.640 -1.501 ETKDGv3 22
EU7 HE21 0.650 -0.044 -2.095 ETKDGv3 23
EU7 HE32 0.471 -1.694 1.347 ETKDGv3 24
EU7 HE31 0.611 -2.012 -0.409 ETKDGv3 25
EU7 HF1 -2.007 1.661 1.799 ETKDGv3 26
EU7 HF2 -1.632 0.855 -2.439 ETKDGv3 27
EU7 HF3 -1.708 -2.427 0.391 ETKDGv3 28
EU7 HG12 -1.647 2.504 -0.542 ETKDGv3 29
EU7 HG11 -3.074 1.422 -0.463 ETKDGv3 30
EU7 HG22 -2.896 -0.991 -1.292 ETKDGv3 31
EU7 HG21 -1.346 -1.597 -1.956 ETKDGv3 32
EU7 HG32 -3.116 -0.516 1.210 ETKDGv3 33
EU7 HG31 -1.719 -0.787 2.299 ETKDGv3 34
#