data_DVQ
#
_chem_comp.id DVQ
_chem_comp.name 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H18 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-02
_chem_comp.pdbx_modified_date 2018-06-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 174.241
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DVQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6FMZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DVQ C05 C1 C 0 1 N N N N N N 123.851 9.468 72.969 0.267 1.336 -0.217 C05 DVQ 1
DVQ C06 C2 C 0 1 N N N N N N 124.767 11.414 73.704 0.743 -0.923 0.510 C06 DVQ 2
DVQ C07 C3 C 0 1 N N N N N N 123.793 10.166 71.634 -0.859 0.811 -1.111 C07 DVQ 3
DVQ C08 C4 C 0 1 N N N N N N 123.950 12.066 72.574 -0.382 -1.448 -0.384 C08 DVQ 4
DVQ C09 C5 C 0 1 N N N N N N 125.656 9.570 74.090 2.438 0.796 0.712 C09 DVQ 5
DVQ C10 C6 C 0 1 N N N N N N 122.973 11.890 70.738 -2.056 -0.133 0.771 C10 DVQ 6
DVQ C11 C7 C 0 1 N N N N N N 125.723 9.092 75.520 3.592 -0.205 0.626 C11 DVQ 7
DVQ C12 C8 C 0 1 N N N N N N 121.750 11.361 69.952 -3.404 0.552 0.536 C12 DVQ 8
DVQ N03 N1 N 0 1 N N N N N N 124.551 10.124 73.857 1.302 0.302 -0.079 N03 DVQ 9
DVQ N04 N2 N 0 1 N N N N N N 123.208 11.273 71.865 -1.418 -0.414 -0.522 N04 DVQ 10
DVQ O01 O1 O 0 1 N N N N N N 126.673 8.115 75.465 4.068 -0.269 -0.720 O01 DVQ 11
DVQ O02 O2 O 0 1 N N N N N N 120.534 11.614 70.561 -4.284 -0.349 -0.141 O02 DVQ 12
DVQ H052 H1 H 0 0 N N N N N N 122.825 9.350 73.348 0.702 2.228 -0.666 H052 DVQ 13
DVQ H051 H2 H 0 0 N N N N N N 124.305 8.476 72.827 -0.134 1.583 0.766 H051 DVQ 14
DVQ H062 H3 H 0 0 N N N N N N 125.835 11.560 73.485 0.348 -0.702 1.502 H062 DVQ 15
DVQ H061 H4 H 0 0 N N N N N N 124.514 11.920 74.648 1.526 -1.678 0.591 H061 DVQ 16
DVQ H072 H5 H 0 0 N N N N N N 123.219 9.569 70.910 -1.641 1.565 -1.191 H072 DVQ 17
DVQ H071 H6 H 0 0 N N N N N N 124.807 10.339 71.244 -0.463 0.590 -2.102 H071 DVQ 18
DVQ H082 H7 H 0 0 N N N N N N 124.658 12.560 71.892 0.019 -1.695 -1.367 H082 DVQ 19
DVQ H081 H8 H 0 0 N N N N N N 123.292 12.821 73.030 -0.817 -2.341 0.066 H081 DVQ 20
DVQ H092 H9 H 0 0 N N N N N N 125.778 8.709 73.416 2.133 0.911 1.752 H092 DVQ 21
DVQ H091 H10 H 0 0 N N N N N N 126.466 10.292 73.913 2.762 1.759 0.319 H091 DVQ 22
DVQ H102 H11 H 0 0 N N N N N N 123.862 11.785 70.099 -1.414 0.523 1.359 H102 DVQ 23
DVQ H101 H12 H 0 0 N N N N N N 122.804 12.954 70.959 -2.213 -1.067 1.310 H101 DVQ 24
DVQ H112 H13 H 0 0 N N N N N N 126.028 9.904 76.196 4.401 0.117 1.282 H112 DVQ 25
DVQ H111 H14 H 0 0 N N N N N N 124.755 8.686 75.848 3.243 -1.190 0.935 H111 DVQ 26
DVQ H121 H15 H 0 0 N N N N N N 121.858 10.272 69.836 -3.840 0.835 1.494 H121 DVQ 27
DVQ H122 H16 H 0 0 N N N N N N 121.745 11.836 68.960 -3.257 1.443 -0.074 H122 DVQ 28
DVQ H011 H19 H 0 0 N N N N N N 126.794 7.742 76.330 4.802 -0.885 -0.849 H011 DVQ 29
DVQ H021 H20 H 0 0 N N N N N N 119.832 11.263 70.026 -5.159 0.019 -0.323 H021 DVQ 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DVQ C12 O02 SING N N 1
DVQ C12 C10 SING N N 2
DVQ C10 N04 SING N N 3
DVQ C07 N04 SING N N 4
DVQ C07 C05 SING N N 5
DVQ N04 C08 SING N N 6
DVQ C08 C06 SING N N 7
DVQ C05 N03 SING N N 8
DVQ C06 N03 SING N N 9
DVQ N03 C09 SING N N 10
DVQ C09 C11 SING N N 11
DVQ O01 C11 SING N N 12
DVQ C05 H052 SING N N 13
DVQ C05 H051 SING N N 14
DVQ C06 H062 SING N N 15
DVQ C06 H061 SING N N 16
DVQ C07 H072 SING N N 17
DVQ C07 H071 SING N N 18
DVQ C08 H082 SING N N 19
DVQ C08 H081 SING N N 20
DVQ C09 H092 SING N N 21
DVQ C09 H091 SING N N 22
DVQ C10 H102 SING N N 23
DVQ C10 H101 SING N N 24
DVQ C11 H112 SING N N 25
DVQ C11 H111 SING N N 26
DVQ C12 H121 SING N N 27
DVQ C12 H122 SING N N 28
DVQ O01 H011 SING N N 29
DVQ O02 H021 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DVQ InChI InChI 1.03 InChI=1S/C8H18N2O2/c11-7-5-9-1-2-10(4-3-9)6-8-12/h11-12H,1-8H2
DVQ InChIKey InChI 1.03 VARKIGWTYBUWNT-UHFFFAOYSA-N
DVQ SMILES_CANONICAL CACTVS 3.385 OCCN1CCN(CCO)CC1
DVQ SMILES CACTVS 3.385 OCCN1CCN(CCO)CC1
DVQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C1CN(CCN1CCO)CCO
DVQ SMILES "OpenEye OEToolkits" 2.0.6 C1CN(CCN1CCO)CCO
#
_pdbx_chem_comp_identifier.comp_id DVQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DVQ 'Create component' 2018-02-02 EBI
DVQ 'Initial release' 2018-06-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DVQ C05 C 3.805 -0.750 1
DVQ C06 C 6.404 -0.750 2
DVQ C07 C 3.805 0.750 3
DVQ C08 C 6.404 0.750 4
DVQ C09 C 5.104 -3.000 5
DVQ C10 C 5.104 3.000 6
DVQ C11 C 3.805 -3.750 7
DVQ C12 C 6.404 3.750 8
DVQ N03 N 5.104 -1.500 9
DVQ N04 N 5.104 1.500 10
DVQ O01 O 3.805 -5.250 11
DVQ O02 O 6.404 5.250 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DVQ C12 O02 SINGLE NONE 1
DVQ C12 C10 SINGLE NONE 2
DVQ C10 N04 SINGLE NONE 3
DVQ C07 N04 SINGLE NONE 4
DVQ C07 C05 SINGLE NONE 5
DVQ N04 C08 SINGLE NONE 6
DVQ C08 C06 SINGLE NONE 7
DVQ C05 N03 SINGLE NONE 8
DVQ C06 N03 SINGLE NONE 9
DVQ N03 C09 SINGLE NONE 10
DVQ C09 C11 SINGLE NONE 11
DVQ O01 C11 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DVQ MurckoScaffold S1 scaffold C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
DVQ piperazine F1 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DVQ C05 S1 1
DVQ C06 S1 1
DVQ C07 S1 1
DVQ C08 S1 1
DVQ N03 S1 1
DVQ N04 S1 1
DVQ N03 F1 1
DVQ C05 F1 1
DVQ C07 F1 1
DVQ N04 F1 1
DVQ C08 F1 1
DVQ C06 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DVQ
_pdbe_chem_comp_rdkit_properties.exactmw 174.137
_pdbe_chem_comp_rdkit_properties.amw 174.244
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 98.859
_pdbe_chem_comp_rdkit_properties.tpsa 46.940
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.411
_pdbe_chem_comp_rdkit_properties.CrippenMR 47.052
_pdbe_chem_comp_rdkit_properties.chi0v 5.711
_pdbe_chem_comp_rdkit_properties.chi1v 2.750
_pdbe_chem_comp_rdkit_properties.chi2v 0.862
_pdbe_chem_comp_rdkit_properties.chi3v 0.862
_pdbe_chem_comp_rdkit_properties.chi4v 0.459
_pdbe_chem_comp_rdkit_properties.chi0n 23.711
_pdbe_chem_comp_rdkit_properties.chi1n 11.566
_pdbe_chem_comp_rdkit_properties.chi2n 0.862
_pdbe_chem_comp_rdkit_properties.chi3n 0.862
_pdbe_chem_comp_rdkit_properties.chi4n 0.459
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.160
_pdbe_chem_comp_rdkit_properties.kappa1 1.562
_pdbe_chem_comp_rdkit_properties.kappa2 5.480
_pdbe_chem_comp_rdkit_properties.kappa3 3.065
_pdbe_chem_comp_rdkit_properties.Phi 0.713
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DVQ UniChem ZINC ZINC000019363644
DVQ UniChem eMolecules 535179
DVQ UniChem fdasrs EQ349PKX8Y
DVQ UniChem 'PubChem TPHARMA' 15171229
DVQ UniChem ACTor 122-96-3
DVQ UniChem Nikkaji J1.038.075H
DVQ UniChem ChemicalBook CB3115114
DVQ UniChem CCDC JOTKOS
DVQ UniChem 'EPA CompTox Dashboard' DTXSID3029158
DVQ UniChem SureChEMBL SCHEMBL154974
DVQ UniChem PubChem 67151
DVQ UniChem Mcule MCULE-6426555526
DVQ UniChem Nikkaji J20E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DVQ C05 0.644 -1.138 0.655 ETKDGv3 1
DVQ C06 0.739 1.208 -0.182 ETKDGv3 2
DVQ C07 -0.870 -0.901 0.627 ETKDGv3 3
DVQ C08 -0.229 0.626 -1.226 ETKDGv3 4
DVQ C09 2.825 0.021 0.489 ETKDGv3 5
DVQ C10 -2.531 0.599 -0.384 ETKDGv3 6
DVQ C11 3.262 -0.435 -0.917 ETKDGv3 7
DVQ C12 -3.735 -0.305 -0.089 ETKDGv3 8
DVQ N03 1.361 0.153 0.654 ETKDGv3 9
DVQ N04 -1.302 -0.195 -0.608 ETKDGv3 10
DVQ O01 4.660 -0.410 -1.012 ETKDGv3 11
DVQ O02 -4.908 0.459 -0.015 ETKDGv3 12
DVQ H052 0.905 -1.702 1.577 ETKDGv3 13
DVQ H051 0.916 -1.761 -0.222 ETKDGv3 14
DVQ H062 1.499 1.838 -0.692 ETKDGv3 15
DVQ H061 0.169 1.889 0.485 ETKDGv3 16
DVQ H072 -1.381 -1.887 0.675 ETKDGv3 17
DVQ H071 -1.144 -0.328 1.542 ETKDGv3 18
DVQ H082 0.344 -0.016 -1.928 ETKDGv3 19
DVQ H081 -0.640 1.455 -1.844 ETKDGv3 20
DVQ H092 3.300 1.000 0.718 ETKDGv3 21
DVQ H091 3.217 -0.700 1.240 ETKDGv3 22
DVQ H102 -2.780 1.177 -1.301 ETKDGv3 23
DVQ H101 -2.388 1.327 0.446 ETKDGv3 24
DVQ H112 2.820 0.208 -1.709 ETKDGv3 25
DVQ H111 2.931 -1.476 -1.102 ETKDGv3 26
DVQ H121 -3.595 -0.817 0.885 ETKDGv3 27
DVQ H122 -3.830 -1.086 -0.878 ETKDGv3 28
DVQ H011 4.921 0.541 -1.128 ETKDGv3 29
DVQ H021 -5.180 0.656 -0.949 ETKDGv3 30
#