data_DUO
#
_chem_comp.id DUO
_chem_comp.name
"4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H27 N3 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "DUOCARMYCIN A"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 509.508
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DUO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 107D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DUO N1 N1 N 0 1 N N N N N N 2.577 7.193 -6.269 0.952 -0.489 5.673 N1 DUO 1
DUO C2 C2 C 0 1 N N R N N N 3.313 5.997 -6.676 -0.480 -0.520 5.999 C2 DUO 2
DUO C3 C3 C 0 1 N N N N N N 2.561 4.834 -6.150 -1.201 -0.411 4.674 C3 DUO 3
DUO C4 C4 C 0 1 Y N N N N N 1.401 5.344 -5.381 -0.140 -0.321 3.658 C4 DUO 4
DUO C5 C5 C 0 1 Y N N N N N 1.446 6.730 -5.489 1.105 -0.372 4.297 C5 DUO 5
DUO C6 C6 C 0 1 Y N N N N N 0.469 7.528 -4.879 2.266 -0.304 3.519 C6 DUO 6
DUO C7 C7 C 0 1 Y N N N N N -0.568 6.936 -4.164 2.184 -0.189 2.149 C7 DUO 7
DUO C8 C8 C 0 1 Y N N N N N -0.633 5.549 -4.055 0.941 -0.138 1.506 C8 DUO 8
DUO C9 C9 C 0 1 Y N N N N N 0.368 4.782 -4.641 -0.210 -0.204 2.261 C9 DUO 9
DUO C10 C10 C 0 1 N N N N N N -0.585 2.626 -5.494 -2.248 -1.399 1.444 C10 DUO 10
DUO C11 C11 C 0 1 N N S N N N 0.143 3.320 -4.353 -1.403 -0.128 1.335 C11 DUO 11
DUO C12 C12 C 0 1 N N N N N N -0.810 3.459 -3.224 -0.793 -0.009 -0.070 C12 DUO 12
DUO N13 N13 N 0 1 N N N N N N -1.592 4.667 -3.410 0.656 -0.023 0.139 N13 DUO 13
DUO C14 C14 C 0 1 N N N N N N -2.793 5.054 -2.672 1.580 0.059 -0.838 C14 DUO 14
DUO C15 C15 C 0 1 Y N N N N N -3.468 4.291 -1.561 1.161 0.067 -2.245 C15 DUO 15
DUO C16 C16 C 0 1 Y N N N N N -3.027 3.167 -0.882 1.997 0.041 -3.317 C16 DUO 16
DUO C17 C17 C 0 1 Y N N N N N -3.982 2.775 0.038 1.201 0.055 -4.487 C17 DUO 17
DUO C18 C18 C 0 1 Y N N N N N -4.163 1.731 0.943 1.508 0.039 -5.857 C18 DUO 18
DUO C19 C19 C 0 1 Y N N N N N -5.305 1.598 1.735 0.492 0.067 -6.786 C19 DUO 19
DUO C20 C20 C 0 1 Y N N N N N -6.291 2.595 1.637 -0.842 0.111 -6.372 C20 DUO 20
DUO C21 C21 C 0 1 Y N N N N N -6.167 3.641 0.705 -1.159 0.129 -5.025 C21 DUO 21
DUO C22 C22 C 0 1 Y N N N N N -5.009 3.702 -0.085 -0.141 0.100 -4.071 C22 DUO 22
DUO N23 N23 N 0 1 Y N N N N N -4.664 4.573 -1.033 -0.146 0.107 -2.693 N23 DUO 23
DUO O24 O24 O 0 1 N N N N N N -5.453 0.518 2.601 0.788 0.051 -8.114 O24 DUO 24
DUO C25 C25 C 0 1 N N N N N N -4.866 -0.772 2.317 2.213 0.005 -8.218 C25 DUO 25
DUO O26 O26 O 0 1 N N N N N N -7.402 2.553 2.470 -1.836 0.138 -7.300 O26 DUO 26
DUO C27 C27 C 0 1 N N N N N N -8.471 1.666 2.115 -2.017 1.506 -7.672 C27 DUO 27
DUO O28 O28 O 0 1 N N N N N N -7.156 4.604 0.567 -2.461 0.172 -4.632 O28 DUO 28
DUO C29 C29 C 0 1 N N N N N N -8.058 4.383 -0.525 -2.864 -1.177 -4.392 C29 DUO 29
DUO O30 O30 O 0 1 N N N N N N -3.272 6.126 -3.048 2.761 0.129 -0.554 O30 DUO 30
DUO O31 O31 O 0 1 N N N N N N 0.449 8.903 -4.928 3.485 -0.351 4.121 O31 DUO 31
DUO O32 O32 O 0 1 N N N N N N 2.819 3.640 -6.331 -2.400 -0.400 4.487 O32 DUO 32
DUO C33 C33 C 0 1 N N N N N N 3.190 6.017 -8.203 -0.837 -1.838 6.689 C33 DUO 33
DUO C34 C34 C 0 1 N N N N N N 4.723 5.800 -6.206 -0.839 0.644 6.885 C34 DUO 34
DUO O35 O35 O 0 1 N N N N N N 4.993 5.927 -5.013 -1.932 1.153 6.801 O35 DUO 35
DUO O36 O36 O 0 1 N N N N N N 5.748 5.487 -7.087 0.055 1.117 7.767 O36 DUO 36
DUO C37 C37 C 0 1 N N N N N N 6.101 4.098 -7.115 -0.290 2.240 8.620 C37 DUO 37
DUO H1 H1 H 0 1 N N N N N N 3.130 7.881 -5.843 1.323 0.357 6.079 H1 DUO 38
DUO H7 H7 H 0 1 N N N N N N -1.341 7.550 -3.725 3.089 -0.138 1.563 H7 DUO 39
DUO H101 1H10 H 0 0 N N N N N N -1.546 3.157 -5.429 -3.068 -1.353 0.728 H101 DUO 40
DUO H102 2H10 H 0 0 N N N N N N 0.036 2.804 -6.385 -1.626 -2.268 1.229 H102 DUO 41
DUO H103 3H10 H 0 0 N N N N N N -0.053 2.772 -6.463 -2.651 -1.482 2.454 H103 DUO 42
DUO H11 H11 H 0 1 N N N N N N 1.007 2.801 -3.910 -2.007 0.749 1.564 H11 DUO 43
DUO H121 1H12 H 0 0 N N N N N N -0.129 3.624 -2.376 -1.099 0.927 -0.537 H121 DUO 44
DUO H122 2H12 H 0 0 N N N N N N -1.338 2.498 -3.134 -1.095 -0.856 -0.687 H122 DUO 45
DUO H16 H16 H 0 1 N N N N N N -2.066 2.713 -1.074 3.076 0.008 -3.282 H16 DUO 46
DUO H18 H18 H 0 1 N N N N N N -3.421 0.959 1.080 2.537 0.005 -6.181 H18 DUO 47
DUO H23 H23 H 0 1 N N N N N N -5.213 5.315 -1.312 -0.935 0.135 -2.130 H23 DUO 48
DUO H251 1H25 H 0 0 N N N N N N -4.901 -1.405 3.216 2.500 -0.008 -9.269 H251 DUO 49
DUO H252 2H25 H 0 0 N N N N N N -3.799 -0.657 2.076 2.641 0.884 -7.736 H252 DUO 50
DUO H253 3H25 H 0 0 N N N N N N -5.330 -1.319 1.483 2.584 -0.894 -7.728 H253 DUO 51
DUO H271 1H27 H 0 0 N N N N N N -9.209 1.646 2.930 -2.745 1.570 -8.480 H271 DUO 52
DUO H272 2H27 H 0 0 N N N N N N -8.093 0.646 1.945 -2.378 2.072 -6.813 H272 DUO 53
DUO H273 3H27 H 0 0 N N N N N N -8.944 2.040 1.195 -1.066 1.921 -8.007 H273 DUO 54
DUO H291 1H29 H 0 0 N N N N N N -7.518 4.547 -1.470 -3.928 -1.202 -4.159 H291 DUO 55
DUO H292 2H29 H 0 0 N N N N N N -8.909 5.078 -0.464 -2.672 -1.777 -5.282 H292 DUO 56
DUO H293 3H29 H 0 0 N N N N N N -8.428 3.348 -0.482 -2.298 -1.582 -3.553 H293 DUO 57
DUO H31 H31 H 0 1 N N N N N N 0.657 9.170 -5.823 3.738 -1.284 4.167 H31 DUO 58
DUO H331 1H33 H 0 0 N N N N N N 3.937 5.343 -8.647 -0.295 -1.913 7.632 H331 DUO 59
DUO H332 2H33 H 0 0 N N N N N N 3.357 7.045 -8.557 -1.909 -1.868 6.883 H332 DUO 60
DUO H333 3H33 H 0 0 N N N N N N 2.180 5.686 -8.488 -0.562 -2.672 6.044 H333 DUO 61
DUO H371 1H37 H 0 0 N N N N N N 6.576 3.839 -8.073 0.555 2.480 9.265 H371 DUO 62
DUO H372 2H37 H 0 0 N N N N N N 6.796 3.865 -6.295 -0.533 3.104 8.003 H372 DUO 63
DUO H373 3H37 H 0 0 N N N N N N 5.195 3.483 -7.013 -1.152 1.978 9.234 H373 DUO 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DUO N1 C2 SING N N 1
DUO N1 C5 SING N N 2
DUO N1 H1 SING N N 3
DUO C2 C3 SING N N 4
DUO C2 C33 SING N N 5
DUO C2 C34 SING N N 6
DUO C3 C4 SING N N 7
DUO C3 O32 DOUB N N 8
DUO C4 C5 DOUB Y N 9
DUO C4 C9 SING Y N 10
DUO C5 C6 SING Y N 11
DUO C6 C7 DOUB Y N 12
DUO C6 O31 SING N N 13
DUO C7 C8 SING Y N 14
DUO C7 H7 SING N N 15
DUO C8 C9 DOUB Y N 16
DUO C8 N13 SING N N 17
DUO C9 C11 SING N N 18
DUO C10 C11 SING N N 19
DUO C10 H101 SING N N 20
DUO C10 H102 SING N N 21
DUO C10 H103 SING N N 22
DUO C11 C12 SING N N 23
DUO C11 H11 SING N N 24
DUO C12 N13 SING N N 25
DUO C12 H121 SING N N 26
DUO C12 H122 SING N N 27
DUO N13 C14 SING N N 28
DUO C14 C15 SING N N 29
DUO C14 O30 DOUB N N 30
DUO C15 C16 DOUB Y N 31
DUO C15 N23 SING Y N 32
DUO C16 C17 SING Y N 33
DUO C16 H16 SING N N 34
DUO C17 C18 DOUB Y N 35
DUO C17 C22 SING Y N 36
DUO C18 C19 SING Y N 37
DUO C18 H18 SING N N 38
DUO C19 C20 DOUB Y N 39
DUO C19 O24 SING N N 40
DUO C20 C21 SING Y N 41
DUO C20 O26 SING N N 42
DUO C21 C22 DOUB Y N 43
DUO C21 O28 SING N N 44
DUO C22 N23 SING Y N 45
DUO N23 H23 SING N N 46
DUO O24 C25 SING N N 47
DUO C25 H251 SING N N 48
DUO C25 H252 SING N N 49
DUO C25 H253 SING N N 50
DUO O26 C27 SING N N 51
DUO C27 H271 SING N N 52
DUO C27 H272 SING N N 53
DUO C27 H273 SING N N 54
DUO O28 C29 SING N N 55
DUO C29 H291 SING N N 56
DUO C29 H292 SING N N 57
DUO C29 H293 SING N N 58
DUO O31 H31 SING N N 59
DUO C33 H331 SING N N 60
DUO C33 H332 SING N N 61
DUO C33 H333 SING N N 62
DUO C34 O35 DOUB N N 63
DUO C34 O36 SING N N 64
DUO O36 C37 SING N N 65
DUO C37 H371 SING N N 66
DUO C37 H372 SING N N 67
DUO C37 H373 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DUO SMILES ACDLabs 10.04 O=C(N3c2cc(O)c1c(C(=O)C(C(=O)OC)(N1)C)c2C(C)C3)c5cc4cc(OC)c(OC)c(OC)c4n5
DUO SMILES_CANONICAL CACTVS 3.341 COC(=O)[C@]1(C)Nc2c(O)cc3N(C[C@@H](C)c3c2C1=O)C(=O)c4[nH]c5c(c4)cc(OC)c(OC)c5OC
DUO SMILES CACTVS 3.341 COC(=O)[C]1(C)Nc2c(O)cc3N(C[CH](C)c3c2C1=O)C(=O)c4[nH]c5c(c4)cc(OC)c(OC)c5OC
DUO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]1CN(c2c1c3c(c(c2)O)N[C@@](C3=O)(C)C(=O)OC)C(=O)c4cc5cc(c(c(c5[nH]4)OC)OC)OC
DUO SMILES "OpenEye OEToolkits" 1.5.0 CC1CN(c2c1c3c(c(c2)O)NC(C3=O)(C)C(=O)OC)C(=O)c4cc5cc(c(c(c5[nH]4)OC)OC)OC
DUO InChI InChI 1.03 InChI=1S/C26H27N3O8/c1-11-10-29(14-9-15(30)20-18(17(11)14)23(31)26(2,28-20)25(33)37-6)24(32)13-7-12-8-16(34-3)21(35-4)22(36-5)19(12)27-13/h7-9,11,27-28,30H,10H2,1-6H3/t11-,26-/m1/s1
DUO InChIKey InChI 1.03 WQAYQZWERWNDPV-RPHGYIDUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DUO "SYSTEMATIC NAME" ACDLabs 10.04 "methyl (2R,8S)-4-hydroxy-2,8-dimethyl-1-oxo-6-[(5,6,7-trimethoxy-1H-indol-2-yl)carbonyl]-1,2,3,6,7,8-hexahydropyrrolo[3,2-e]indole-2-carboxylate"
DUO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "methyl (1S,7R)-5-hydroxy-1,7-dimethyl-8-oxo-3-[(5,6,7-trimethoxy-1H-indol-2-yl)carbonyl]-2,6-dihydro-1H-pyrrolo[4,5-e]indole-7-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DUO 'Create component' 1999-07-08 EBI
DUO 'Modify descriptor' 2011-06-04 RCSB
DUO 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DUO
_pdbx_chem_comp_synonyms.name "DUOCARMYCIN A"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id DUO
_pdbe_chem_comp_synonyms.name 'DUOCARMYCIN A'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DUO N1 N 17.541 -2.416 1
DUO C2 C 16.933 -3.777 2
DUO C3 C 15.450 -3.623 3
DUO C4 C 15.137 -2.165 4
DUO C5 C 16.436 -1.415 5
DUO C6 C 16.436 0.085 6
DUO C7 C 15.137 0.835 7
DUO C8 C 13.838 0.085 8
DUO C9 C 13.838 -1.415 9
DUO C10 C 11.952 -3.298 10
DUO C11 C 12.418 -1.872 11
DUO C12 C 11.543 -0.665 12
DUO N13 N 12.418 0.542 13
DUO C14 C 11.952 1.968 14
DUO C15 C 10.485 2.277 15
DUO C16 C 9.877 3.639 16
DUO C17 C 8.394 3.484 17
DUO C18 C 7.277 4.486 18
DUO C19 C 5.851 4.020 19
DUO C20 C 5.542 2.552 20
DUO C21 C 6.659 1.550 21
DUO C22 C 8.084 2.016 22
DUO N23 N 9.379 1.276 23
DUO O24 O 4.735 5.022 24
DUO C25 C 5.045 6.489 25
DUO O26 O 4.117 2.086 26
DUO C27 C 3.000 3.088 27
DUO O28 O 6.349 0.083 28
DUO C29 C 4.924 -0.383 29
DUO O30 O 12.954 3.084 30
DUO O31 O 17.735 0.835 31
DUO O32 O 14.449 -4.739 32
DUO C33 C 16.777 -5.269 33
DUO C34 C 18.304 -4.388 34
DUO O35 O 19.517 -3.506 35
DUO O36 O 18.461 -5.879 36
DUO C37 C 19.831 -6.489 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DUO N1 C2 SINGLE NONE 1
DUO N1 C5 SINGLE NONE 2
DUO C2 C3 SINGLE NONE 3
DUO C2 C33 SINGLE BEGINDASH 4
DUO C2 C34 SINGLE NONE 5
DUO C3 C4 SINGLE NONE 6
DUO C3 O32 DOUBLE NONE 7
DUO C4 C5 DOUBLE NONE 8
DUO C4 C9 SINGLE NONE 9
DUO C5 C6 SINGLE NONE 10
DUO C6 C7 DOUBLE NONE 11
DUO C6 O31 SINGLE NONE 12
DUO C7 C8 SINGLE NONE 13
DUO C8 C9 DOUBLE NONE 14
DUO C8 N13 SINGLE NONE 15
DUO C9 C11 SINGLE NONE 16
DUO C11 C10 SINGLE BEGINDASH 17
DUO C11 C12 SINGLE NONE 18
DUO C12 N13 SINGLE NONE 19
DUO N13 C14 SINGLE NONE 20
DUO C14 C15 SINGLE NONE 21
DUO C14 O30 DOUBLE NONE 22
DUO C15 C16 DOUBLE NONE 23
DUO C15 N23 SINGLE NONE 24
DUO C16 C17 SINGLE NONE 25
DUO C17 C18 DOUBLE NONE 26
DUO C17 C22 SINGLE NONE 27
DUO C18 C19 SINGLE NONE 28
DUO C19 C20 DOUBLE NONE 29
DUO C19 O24 SINGLE NONE 30
DUO C20 C21 SINGLE NONE 31
DUO C20 O26 SINGLE NONE 32
DUO C21 C22 DOUBLE NONE 33
DUO C21 O28 SINGLE NONE 34
DUO C22 N23 SINGLE NONE 35
DUO O24 C25 SINGLE NONE 36
DUO O26 C27 SINGLE NONE 37
DUO O28 C29 SINGLE NONE 38
DUO C34 O35 DOUBLE NONE 39
DUO C34 O36 SINGLE NONE 40
DUO O36 C37 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DUO MurckoScaffold S1 scaffold 'O=C1CNc2ccc3c(c21)CCN3C(=O)c1cc2ccccc2[nH]1' InChI=1S/C19H15N3O2/c23-17-10-20-14-5-6-16-12(18(14)17)7-8-22(16)19(24)15-9-11-3-1-2-4-13(11)21-15/h1-6,9,20-21H,7-8,10H2 YXIIQJLENRHKPV-UHFFFAOYSA-N
DUO amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DUO indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
DUO peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DUO phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DUO pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
DUO Z343211224 F6 fragment O=C(O)C1Cc2ccccc2N1 InChI=1S/C9H9NO2/c11-9(12)8-5-6-3-1-2-4-7(6)10-8/h1-4,8,10H,5H2,(H,11,12) QNRXNRGSOJZINA-UHFFFAOYSA-N
DUO Z2856434814 F7 fragment CCN(CC)c1cccc(O)c1 InChI=1S/C10H15NO/c1-3-11(4-2)9-6-5-7-10(12)8-9/h5-8,12H,3-4H2,1-2H3 WAVOOWVINKGEHS-UHFFFAOYSA-N
DUO Z52314092 F8 fragment CC(=O)NCCc1ccccc1C InChI=1S/C11H15NO/c1-9-5-3-4-6-11(9)7-8-12-10(2)13/h3-6H,7-8H2,1-2H3,(H,12,13) OAMCTZZCYXDSLI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DUO N1 S1 1
DUO C2 S1 1
DUO C3 S1 1
DUO C4 S1 1
DUO C5 S1 1
DUO C6 S1 1
DUO C7 S1 1
DUO C8 S1 1
DUO C9 S1 1
DUO C11 S1 1
DUO C12 S1 1
DUO N13 S1 1
DUO C14 S1 1
DUO C15 S1 1
DUO C16 S1 1
DUO C17 S1 1
DUO C18 S1 1
DUO C19 S1 1
DUO C20 S1 1
DUO C21 S1 1
DUO C22 S1 1
DUO N23 S1 1
DUO O30 S1 1
DUO O32 S1 1
DUO N13 F1 1
DUO C14 F1 1
DUO O30 F1 1
DUO C15 F1 1
DUO C22 F2 1
DUO C17 F2 1
DUO C16 F2 1
DUO C15 F2 1
DUO N23 F2 1
DUO C18 F2 1
DUO C19 F2 1
DUO C20 F2 1
DUO C21 F2 1
DUO O32 F3 1
DUO C3 F3 1
DUO C2 F3 1
DUO N1 F3 1
DUO O35 F3 2
DUO C34 F3 2
DUO C2 F3 2
DUO N1 F3 2
DUO C4 F4 1
DUO C5 F4 1
DUO C6 F4 1
DUO C7 F4 1
DUO C8 F4 1
DUO C9 F4 1
DUO C17 F4 2
DUO C18 F4 2
DUO C19 F4 2
DUO C20 F4 2
DUO C21 F4 2
DUO C22 F4 2
DUO C15 F5 1
DUO C16 F5 1
DUO C17 F5 1
DUO C22 F5 1
DUO N23 F5 1
DUO O36 F6 1
DUO C34 F6 1
DUO O35 F6 1
DUO C2 F6 1
DUO C3 F6 1
DUO C4 F6 1
DUO C9 F6 1
DUO C8 F6 1
DUO C7 F6 1
DUO C6 F6 1
DUO C5 F6 1
DUO N1 F6 1
DUO C11 F7 1
DUO C12 F7 1
DUO N13 F7 1
DUO C14 F7 1
DUO C15 F7 1
DUO C8 F7 1
DUO C9 F7 1
DUO C4 F7 1
DUO C5 F7 1
DUO C6 F7 1
DUO O31 F7 1
DUO C7 F7 1
DUO C15 F8 1
DUO C14 F8 1
DUO O30 F8 1
DUO N13 F8 1
DUO C12 F8 1
DUO C11 F8 1
DUO C9 F8 1
DUO C8 F8 1
DUO C7 F8 1
DUO C6 F8 1
DUO C5 F8 1
DUO C4 F8 1
DUO C3 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DUO
_pdbe_chem_comp_rdkit_properties.exactmw 509.180
_pdbe_chem_comp_rdkit_properties.amw 509.515
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.346
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 249.927
_pdbe_chem_comp_rdkit_properties.tpsa 139.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.000
_pdbe_chem_comp_rdkit_properties.CrippenMR 127.435
_pdbe_chem_comp_rdkit_properties.chi0v 17.608
_pdbe_chem_comp_rdkit_properties.chi1v 9.515
_pdbe_chem_comp_rdkit_properties.chi2v 5.373
_pdbe_chem_comp_rdkit_properties.chi3v 5.373
_pdbe_chem_comp_rdkit_properties.chi4v 3.781
_pdbe_chem_comp_rdkit_properties.chi0n 44.608
_pdbe_chem_comp_rdkit_properties.chi1n 22.817
_pdbe_chem_comp_rdkit_properties.chi2n 5.373
_pdbe_chem_comp_rdkit_properties.chi3n 5.373
_pdbe_chem_comp_rdkit_properties.chi4n 3.781
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.410
_pdbe_chem_comp_rdkit_properties.kappa1 8.043
_pdbe_chem_comp_rdkit_properties.kappa2 8.325
_pdbe_chem_comp_rdkit_properties.kappa3 3.226
_pdbe_chem_comp_rdkit_properties.Phi 1.810
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DUO UniChem ZINC ZINC000003872392
DUO UniChem SureChEMBL SCHEMBL19493155
DUO UniChem PubChem 5288126
DUO UniChem NMRShiftDB 80014801
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DUO N1 5.788 -1.070 -1.063 ETKDGv3 1
DUO C2 6.408 -0.640 0.194 ETKDGv3 2
DUO C3 5.222 -0.174 0.991 ETKDGv3 3
DUO C4 4.023 -0.363 0.194 ETKDGv3 4
DUO C5 4.379 -0.862 -0.977 ETKDGv3 5
DUO C6 3.375 -1.093 -2.053 ETKDGv3 6
DUO C7 2.088 -0.764 -1.815 ETKDGv3 7
DUO C8 1.717 -0.189 -0.492 ETKDGv3 8
DUO C9 2.614 -0.027 0.464 ETKDGv3 9
DUO C10 2.048 -0.505 2.847 ETKDGv3 10
DUO C11 1.993 0.520 1.708 ETKDGv3 11
DUO C12 0.533 0.793 1.262 ETKDGv3 12
DUO N13 0.423 0.232 -0.086 ETKDGv3 13
DUO C14 -0.661 0.529 -0.979 ETKDGv3 14
DUO C15 -2.062 0.321 -0.574 ETKDGv3 15
DUO C16 -2.458 -0.499 0.411 ETKDGv3 16
DUO C17 -3.913 -0.480 0.429 ETKDGv3 17
DUO C18 -4.785 -1.172 1.156 ETKDGv3 18
DUO C19 -6.241 -0.986 0.865 ETKDGv3 19
DUO C20 -6.641 -0.139 -0.120 ETKDGv3 20
DUO C21 -5.610 0.632 -0.907 ETKDGv3 21
DUO C22 -4.321 0.420 -0.610 ETKDGv3 22
DUO N23 -3.167 0.923 -1.265 ETKDGv3 23
DUO O24 -7.221 -1.683 1.589 ETKDGv3 24
DUO C25 -6.934 -2.598 2.640 ETKDGv3 25
DUO O26 -8.023 -0.029 -0.354 ETKDGv3 26
DUO C27 -8.634 0.777 -1.354 ETKDGv3 27
DUO O28 -5.977 1.523 -1.919 ETKDGv3 28
DUO C29 -5.745 2.925 -1.816 ETKDGv3 29
DUO O30 -0.418 0.995 -2.124 ETKDGv3 30
DUO O31 3.735 -1.634 -3.285 ETKDGv3 31
DUO O32 5.264 0.333 2.143 ETKDGv3 32
DUO C33 7.098 -1.831 0.870 ETKDGv3 33
DUO C34 7.365 0.500 -0.047 ETKDGv3 34
DUO O35 8.098 0.914 0.893 ETKDGv3 35
DUO O36 7.408 1.121 -1.300 ETKDGv3 36
DUO C37 8.271 2.215 -1.584 ETKDGv3 37
DUO H1 6.300 -1.456 -1.887 ETKDGv3 38
DUO H7 1.336 -0.927 -2.575 ETKDGv3 39
DUO H101 3.099 -0.728 3.121 ETKDGv3 40
DUO H102 1.549 -1.452 2.548 ETKDGv3 41
DUO H103 1.536 -0.097 3.744 ETKDGv3 42
DUO H11 2.500 1.462 2.011 ETKDGv3 43
DUO H121 -0.213 0.331 1.942 ETKDGv3 44
DUO H122 0.352 1.890 1.223 ETKDGv3 45
DUO H16 -1.819 -1.116 1.029 ETKDGv3 46
DUO H18 -4.434 -1.860 1.912 ETKDGv3 47
DUO H23 -3.125 1.477 -2.148 ETKDGv3 48
DUO H251 -6.393 -2.080 3.460 ETKDGv3 49
DUO H252 -7.887 -2.999 3.041 ETKDGv3 50
DUO H253 -6.326 -3.444 2.255 ETKDGv3 51
DUO H271 -8.275 0.478 -2.361 ETKDGv3 52
DUO H272 -9.731 0.624 -1.317 ETKDGv3 53
DUO H273 -8.427 1.850 -1.161 ETKDGv3 54
DUO H291 -6.138 3.425 -2.725 ETKDGv3 55
DUO H292 -6.275 3.329 -0.928 ETKDGv3 56
DUO H293 -4.663 3.146 -1.727 ETKDGv3 57
DUO H31 4.690 -1.897 -3.494 ETKDGv3 58
DUO H331 6.379 -2.669 1.004 ETKDGv3 59
DUO H332 7.491 -1.543 1.869 ETKDGv3 60
DUO H333 7.942 -2.190 0.243 ETKDGv3 61
DUO H371 9.330 1.910 -1.444 ETKDGv3 62
DUO H372 8.035 3.070 -0.916 ETKDGv3 63
DUO H373 8.125 2.531 -2.637 ETKDGv3 64
#