data_DSC
#
_chem_comp.id DSC
_chem_comp.name 'DODECANESULFONATE ION'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C12 H25 O3 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 249.390
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DSC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1LPN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DSC S S S 0 1 N N N N N N 66.263 53.645 -16.248 -5.636 -0.131 -0.001 S DSC 1
DSC O1S O1S O 0 1 N N N N N N 66.060 52.854 -15.086 -6.787 0.760 0.008 O1S DSC 2
DSC O2S O2S O 0 1 N N N N N N 67.571 54.142 -16.489 -5.667 -0.981 1.178 O2S DSC 3
DSC O3S O3S O -1 1 N Y N N N N 65.826 52.821 -17.431 -5.667 -0.956 -1.199 O3S DSC 4
DSC C1 C1 C 0 1 N N N N N N 65.035 54.976 -16.254 -4.114 0.856 0.009 C1 DSC 5
DSC C2 C2 C 0 1 N N N N N N 65.134 55.898 -17.459 -2.902 -0.077 -0.001 C2 DSC 6
DSC C3 C3 C 0 1 N N N N N N 64.145 57.038 -17.293 -1.618 0.755 0.008 C3 DSC 7
DSC C4 C4 C 0 1 N N N N N N 63.793 57.662 -18.602 -0.405 -0.178 -0.002 C4 DSC 8
DSC C5 C5 C 0 1 N N N N N N 62.782 58.750 -18.401 0.879 0.654 0.007 C5 DSC 9
DSC C6 C6 C 0 1 N N N N N N 62.499 59.455 -19.690 2.091 -0.279 -0.003 C6 DSC 10
DSC C7 C7 C 0 1 N N N N N N 61.426 60.486 -19.486 3.375 0.553 0.006 C7 DSC 11
DSC C8 C8 C 0 1 N N N N N N 60.096 59.856 -19.170 4.588 -0.380 -0.004 C8 DSC 12
DSC C9 C9 C 0 1 N N N N N N 59.021 60.917 -19.220 5.872 0.452 0.005 C9 DSC 13
DSC C10 C10 C 0 1 N N N N N N 57.655 60.336 -18.950 7.084 -0.481 -0.005 C10 DSC 14
DSC C11 C11 C 0 1 N N N N N N 57.411 60.169 -17.484 8.368 0.351 0.004 C11 DSC 15
DSC C12 C12 C 0 1 N N N N N N 57.166 61.548 -16.890 9.581 -0.582 -0.006 C12 DSC 16
DSC H11 1H1 H 0 1 N N N N N N 64.004 54.559 -16.161 -4.089 1.475 0.906 H11 DSC 17
DSC H12 2H1 H 0 1 N N N N N N 65.086 55.561 -15.306 -4.089 1.494 -0.874 H12 DSC 18
DSC H21 1H2 H 0 1 N N N N N N 66.174 56.260 -17.631 -2.927 -0.696 -0.898 H21 DSC 19
DSC H22 2H2 H 0 1 N N N N N N 64.996 55.353 -18.422 -2.927 -0.716 0.882 H22 DSC 20
DSC H31 1H3 H 0 1 N N N N N N 63.233 56.707 -16.742 -1.592 1.374 0.905 H31 DSC 21
DSC H32 2H3 H 0 1 N N N N N N 64.520 57.798 -16.568 -1.592 1.393 -0.875 H32 DSC 22
DSC H41 1H4 H 0 1 N N N N N N 64.695 58.027 -19.145 -0.431 -0.797 -0.899 H41 DSC 23
DSC H42 2H4 H 0 1 N N N N N N 63.448 56.905 -19.345 -0.431 -0.817 0.881 H42 DSC 24
DSC H51 1H5 H 0 1 N N N N N N 61.849 58.364 -17.927 0.904 1.273 0.904 H51 DSC 25
DSC H52 2H5 H 0 1 N N N N N N 63.094 59.461 -17.601 0.904 1.292 -0.876 H52 DSC 26
DSC H61 1H6 H 0 1 N N N N N N 63.421 59.894 -20.137 2.066 -0.898 -0.900 H61 DSC 27
DSC H62 2H6 H 0 1 N N N N N N 62.244 58.742 -20.509 2.066 -0.918 0.880 H62 DSC 28
DSC H71 1H7 H 0 1 N N N N N N 61.719 61.227 -18.706 3.401 1.172 0.903 H71 DSC 29
DSC H72 2H7 H 0 1 N N N N N N 61.351 61.172 -20.361 3.401 1.191 -0.877 H72 DSC 30
DSC H81 1H8 H 0 1 N N N N N N 59.868 58.990 -19.835 4.562 -0.999 -0.901 H81 DSC 31
DSC H82 2H8 H 0 1 N N N N N N 60.106 59.308 -18.198 4.562 -1.019 0.879 H82 DSC 32
DSC H91 1H9 H 0 1 N N N N N N 59.248 61.760 -18.527 5.897 1.071 0.902 H91 DSC 33
DSC H92 2H9 H 0 1 N N N N N N 59.043 61.474 -20.185 5.897 1.090 -0.878 H92 DSC 34
DSC H101 1H10 H 0 0 N N N N N N 56.851 60.941 -19.431 7.059 -1.100 -0.902 H101 DSC 35
DSC H102 2H10 H 0 0 N N N N N N 57.502 59.378 -19.500 7.059 -1.120 0.878 H102 DSC 36
DSC H111 1H11 H 0 0 N N N N N N 56.587 59.450 -17.262 8.393 0.970 0.901 H111 DSC 37
DSC H112 2H11 H 0 0 N N N N N N 58.232 59.617 -16.969 8.393 0.989 -0.879 H112 DSC 38
DSC H121 1H12 H 0 0 N N N N N N 56.984 61.423 -15.797 10.495 0.011 0.000 H121 DSC 39
DSC H122 2H12 H 0 0 N N N N N N 57.989 62.266 -17.111 9.555 -1.220 0.877 H122 DSC 40
DSC H123 3H12 H 0 0 N N N N N N 56.345 62.100 -17.404 9.555 -1.201 -0.903 H123 DSC 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DSC S O1S DOUB N N 1
DSC S O2S DOUB N N 2
DSC S O3S SING N N 3
DSC S C1 SING N N 4
DSC C1 C2 SING N N 5
DSC C1 H11 SING N N 6
DSC C1 H12 SING N N 7
DSC C2 C3 SING N N 8
DSC C2 H21 SING N N 9
DSC C2 H22 SING N N 10
DSC C3 C4 SING N N 11
DSC C3 H31 SING N N 12
DSC C3 H32 SING N N 13
DSC C4 C5 SING N N 14
DSC C4 H41 SING N N 15
DSC C4 H42 SING N N 16
DSC C5 C6 SING N N 17
DSC C5 H51 SING N N 18
DSC C5 H52 SING N N 19
DSC C6 C7 SING N N 20
DSC C6 H61 SING N N 21
DSC C6 H62 SING N N 22
DSC C7 C8 SING N N 23
DSC C7 H71 SING N N 24
DSC C7 H72 SING N N 25
DSC C8 C9 SING N N 26
DSC C8 H81 SING N N 27
DSC C8 H82 SING N N 28
DSC C9 C10 SING N N 29
DSC C9 H91 SING N N 30
DSC C9 H92 SING N N 31
DSC C10 C11 SING N N 32
DSC C10 H101 SING N N 33
DSC C10 H102 SING N N 34
DSC C11 C12 SING N N 35
DSC C11 H111 SING N N 36
DSC C11 H112 SING N N 37
DSC C12 H121 SING N N 38
DSC C12 H122 SING N N 39
DSC C12 H123 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DSC SMILES ACDLabs 10.04 'O=S(=O)([O-])CCCCCCCCCCCC'
DSC SMILES_CANONICAL CACTVS 3.341 'CCCCCCCCCCCC[S]([O-])(=O)=O'
DSC SMILES CACTVS 3.341 'CCCCCCCCCCCC[S]([O-])(=O)=O'
DSC SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CCCCCCCCCCCCS(=O)(=O)[O-]'
DSC SMILES 'OpenEye OEToolkits' 1.5.0 'CCCCCCCCCCCCS(=O)(=O)[O-]'
DSC InChI InChI 1.03 'InChI=1S/C12H26O3S/c1-2-3-4-5-6-7-8-9-10-11-12-16(13,14)15/h2-12H2,1H3,(H,13,14,15)/p-1'
DSC InChIKey InChI 1.03 LDMOEFOXLIZJOW-UHFFFAOYSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DSC 'SYSTEMATIC NAME' ACDLabs 10.04 dodecane-1-sulfonate
DSC 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 dodecane-1-sulfonate
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DSC 'Create component' 1999-07-08 RCSB
DSC 'Modify descriptor' 2011-06-04 RCSB
DSC 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 DSC HIS None Lipid/lipid-like 'Amino-acid side chain' 'Any position' S NE2 ? ?
2 DSC SER None Lipid/lipid-like 'Amino-acid side chain' 'Any position' S OG ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id DSC
_pdbe_chem_comp_drugbank_details.drugbank_id DB07681
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'DODECANESULFONATE ION'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id DSC
_pdbe_chem_comp_synonyms.name 'DODECANESULFONATE ION'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DSC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07681
_pdbe_chem_comp_drugbank_classification.parent 'Organosulfonic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organic sulfonic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as organosulfonic acids. These are compounds containing the sulfonic acid group, which has the general structure RS(=O)2OH (R is not a hydrogen atom).'
#
_pdbe_chem_comp_drugbank_targets.comp_id DSC
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07681
_pdbe_chem_comp_drugbank_targets.name Cholinesterase
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P06276
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DSC S S 4.299 0.000 1
DSC O1S O 3.000 -0.750 2
DSC O2S O 3.549 1.299 3
DSC O3S O 5.049 -1.299 4
DSC C1 C 5.598 0.750 5
DSC C2 C 6.897 0.000 6
DSC C3 C 8.196 0.750 7
DSC C4 C 9.495 0.000 8
DSC C5 C 10.794 0.750 9
DSC C6 C 12.093 0.000 10
DSC C7 C 13.392 0.750 11
DSC C8 C 14.691 0.000 12
DSC C9 C 15.990 0.750 13
DSC C10 C 17.290 0.000 14
DSC C11 C 18.588 0.750 15
DSC C12 C 19.887 0.000 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DSC S O1S DOUBLE NONE 1
DSC S O2S DOUBLE NONE 2
DSC S O3S SINGLE NONE 3
DSC S C1 SINGLE NONE 4
DSC C1 C2 SINGLE NONE 5
DSC C2 C3 SINGLE NONE 6
DSC C3 C4 SINGLE NONE 7
DSC C4 C5 SINGLE NONE 8
DSC C5 C6 SINGLE NONE 9
DSC C6 C7 SINGLE NONE 10
DSC C7 C8 SINGLE NONE 11
DSC C8 C9 SINGLE NONE 12
DSC C9 C10 SINGLE NONE 13
DSC C10 C11 SINGLE NONE 14
DSC C11 C12 SINGLE NONE 15
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id DSC
_pdbe_chem_comp_rdkit_properties.exactmw 249.153
_pdbe_chem_comp_rdkit_properties.amw 249.396
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.507
_pdbe_chem_comp_rdkit_properties.tpsa 57.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.453
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.408
_pdbe_chem_comp_rdkit_properties.chi0v 8.449
_pdbe_chem_comp_rdkit_properties.chi1v 4.862
_pdbe_chem_comp_rdkit_properties.chi2v 1.091
_pdbe_chem_comp_rdkit_properties.chi3v 1.091
_pdbe_chem_comp_rdkit_properties.chi4v 0.514
_pdbe_chem_comp_rdkit_properties.chi0n 32.633
_pdbe_chem_comp_rdkit_properties.chi1n 15.954
_pdbe_chem_comp_rdkit_properties.chi2n 0.739
_pdbe_chem_comp_rdkit_properties.chi3n 0.739
_pdbe_chem_comp_rdkit_properties.chi4n 0.338
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.090
_pdbe_chem_comp_rdkit_properties.kappa1 2.221
_pdbe_chem_comp_rdkit_properties.kappa2 10.089
_pdbe_chem_comp_rdkit_properties.kappa3 13.910
_pdbe_chem_comp_rdkit_properties.Phi 1.400
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DSC UniChem DrugBank DB07681
DSC UniChem eMolecules 30083746
DSC UniChem PubChem 3383616
DSC UniChem Nikkaji J962.149K
DSC UniChem 'Probes And Drugs' PD005557
DSC UniChem CCDC ZZZDEK
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DSC S 5.418 0.226 -1.872 ETKDGv3 1
DSC O1S 4.309 0.770 -2.727 ETKDGv3 2
DSC O2S 6.478 1.277 -1.700 ETKDGv3 3
DSC O3S 6.088 -1.118 -2.623 ETKDGv3 4
DSC C1 4.774 -0.253 -0.278 ETKDGv3 5
DSC C2 4.174 0.954 0.455 ETKDGv3 6
DSC C3 3.563 0.564 1.817 ETKDGv3 7
DSC C4 2.029 0.451 1.793 ETKDGv3 8
DSC C5 1.531 -0.717 0.927 ETKDGv3 9
DSC C6 0.034 -1.005 1.127 ETKDGv3 10
DSC C7 -0.862 0.107 0.562 ETKDGv3 11
DSC C8 -2.343 -0.276 0.663 ETKDGv3 12
DSC C9 -3.239 0.833 0.092 ETKDGv3 13
DSC C10 -4.738 0.577 0.332 ETKDGv3 14
DSC C11 -5.294 -0.687 -0.349 ETKDGv3 15
DSC C12 -5.184 -0.643 -1.872 ETKDGv3 16
DSC H11 5.603 -0.683 0.324 ETKDGv3 17
DSC H12 4.008 -1.040 -0.432 ETKDGv3 18
DSC H21 3.416 1.452 -0.187 ETKDGv3 19
DSC H22 4.989 1.690 0.631 ETKDGv3 20
DSC H31 4.008 -0.379 2.206 ETKDGv3 21
DSC H32 3.823 1.358 2.552 ETKDGv3 22
DSC H41 1.682 0.302 2.839 ETKDGv3 23
DSC H42 1.599 1.408 1.428 ETKDGv3 24
DSC H51 2.095 -1.636 1.198 ETKDGv3 25
DSC H52 1.721 -0.501 -0.147 ETKDGv3 26
DSC H61 -0.203 -1.958 0.605 ETKDGv3 27
DSC H62 -0.180 -1.152 2.208 ETKDGv3 28
DSC H71 -0.602 0.287 -0.505 ETKDGv3 29
DSC H72 -0.693 1.046 1.132 ETKDGv3 30
DSC H81 -2.605 -0.452 1.729 ETKDGv3 31
DSC H82 -2.508 -1.216 0.094 ETKDGv3 32
DSC H91 -3.039 0.964 -0.992 ETKDGv3 33
DSC H92 -2.980 1.794 0.589 ETKDGv3 34
DSC H101 -5.310 1.459 -0.029 ETKDGv3 35
DSC H102 -4.920 0.499 1.426 ETKDGv3 36
DSC H111 -6.370 -0.776 -0.082 ETKDGv3 37
DSC H112 -4.789 -1.596 0.038 ETKDGv3 38
DSC H121 -5.741 -1.500 -2.307 ETKDGv3 39
DSC H122 -5.619 0.299 -2.268 ETKDGv3 40
DSC H123 -4.124 -0.727 -2.191 ETKDGv3 41
#