data_DMS
#
_chem_comp.id DMS
_chem_comp.name 'DIMETHYL SULFOXIDE'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C2 H6 O S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 78.133
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DMS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8TLN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DMS S S S 0 1 N N N N N N 63.493 46.221 -11.718 0.154 -0.371 0.000 S DMS 1
DMS O O O 0 1 N N N N N N 64.265 45.747 -12.880 1.390 0.331 0.001 O DMS 2
DMS C1 C1 C 0 1 N N N N N N 64.594 47.010 -10.655 -0.864 0.196 1.389 C1 DMS 3
DMS C2 C2 C 0 1 N N N N N N 62.936 44.782 -10.848 -0.862 0.196 -1.390 C2 DMS 4
DMS H11 1H1 H 0 1 N N N N N N 64.009 47.368 -9.775 -0.381 -0.073 2.328 H11 DMS 5
DMS H12 2H1 H 0 1 N N N N N N 65.459 46.367 -10.369 -0.978 1.279 1.337 H12 DMS 6
DMS H13 3H1 H 0 1 N N N N N N 65.173 47.821 -11.153 -1.845 -0.275 1.336 H13 DMS 7
DMS H21 1H2 H 0 1 N N N N N N 62.351 45.140 -9.968 -0.378 -0.072 -2.328 H21 DMS 8
DMS H22 2H2 H 0 1 N N N N N N 62.367 44.072 -11.492 -1.843 -0.275 -1.339 H22 DMS 9
DMS H23 3H2 H 0 1 N N N N N N 63.764 44.088 -10.571 -0.977 1.279 -1.338 H23 DMS 10
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DMS S O DOUB N N 1
DMS S C1 SING N N 2
DMS S C2 SING N N 3
DMS C1 H11 SING N N 4
DMS C1 H12 SING N N 5
DMS C1 H13 SING N N 6
DMS C2 H21 SING N N 7
DMS C2 H22 SING N N 8
DMS C2 H23 SING N N 9
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DMS SMILES ACDLabs 10.04 sulfinyldimethane
DMS SMILES_CANONICAL CACTVS 3.341 'C[S](C)=O'
DMS SMILES CACTVS 3.341 'C[S](C)=O'
DMS SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CS(=O)C'
DMS SMILES 'OpenEye OEToolkits' 1.5.0 'CS(=O)C'
DMS InChI InChI 1.03 'InChI=1S/C2H6OS/c1-4(2)3/h1-2H3'
DMS InChIKey InChI 1.03 IAZDPXIOMUYVGZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DMS 'SYSTEMATIC NAME' ACDLabs 10.04 'dimethyl sulfoxide'
DMS 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 methylsulfinylmethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DMS 'Create component' 1999-07-08 RCSB
DMS 'Modify descriptor' 2011-06-04 RCSB
DMS 'Modify PCM' 2024-09-27 PDBE
#
_pdbe_chem_comp_drugbank_details.comp_id DMS
_pdbe_chem_comp_drugbank_details.drugbank_id DB01093
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Dimethyl sulfoxide'
_pdbe_chem_comp_drugbank_details.description
'A highly polar organic liquid, that is used widely as a chemical solvent. Because of its ability to penetrate biological membranes, it is used as a vehicle for topical application of pharmaceuticals. It is also used to protect tissue during cryopreservation. Dimethyl sulfoxide shows a range of pharmacological activity including analgesia and anti-inflammation.'
_pdbe_chem_comp_drugbank_details.cas_number 67-68-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action
"The mechanism of dimethyl sulfoxide's actions is not well understood. Dimethyl sulfoxide has demonstrated antioxidant activity in certain biological settings. For example, the cardiovascular protective effect of dimethyl sulfoxide in copper-deficient rats is thought to occur by an antioxidant mechanism. It is also thought that dimethyl sulfoxide's possible anti-inflammatory activity is due to antioxidant action."
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DMS 'Dimethyl sulfoxide' DrugBank ?
DMS 'Dimethyl sulfur oxide' DrugBank ?
DMS 'Dimethyl sulphoxide' DrugBank ?
DMS 'Dimethyli sulfoxidum' DrugBank ?
DMS DMSO DrugBank ?
DMS Methylsulfinylmethane DrugBank ?
DMS S(O)Me2 DrugBank ?
DMS Sulfinylbis(methane) DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DMS
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01093
_pdbe_chem_comp_drugbank_classification.parent Sulfoxides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Sulfoxides
_pdbe_chem_comp_drugbank_classification.superclass 'Organosulfur compounds'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as sulfoxides. These are compounds containing a sulfoxide functional group, with the structure RS(=O)R' (R,R' not H)."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DMS DB01093 'Interleukin-5 receptor subunit alpha' Humans Q01344 unknown 1
DMS DB01093 Mucin-16 Humans Q8WXI7 unknown 2
DMS DB01093 'Myc proto-oncogene protein' Humans P01106 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DMS S S 4.299 0.375 1
DMS O O 5.598 1.125 2
DMS C1 C 3.000 1.125 3
DMS C2 C 4.299 -1.125 4
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DMS S O DOUBLE NONE 1
DMS S C1 SINGLE NONE 2
DMS S C2 SINGLE NONE 3
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id DMS
_pdbe_chem_comp_rdkit_properties.exactmw 78.014
_pdbe_chem_comp_rdkit_properties.amw 78.136
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtoms 10
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 36.908
_pdbe_chem_comp_rdkit_properties.tpsa 17.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.005
_pdbe_chem_comp_rdkit_properties.CrippenMR 19.990
_pdbe_chem_comp_rdkit_properties.chi0v 2.633
_pdbe_chem_comp_rdkit_properties.chi1v 1.725
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 7.816
_pdbe_chem_comp_rdkit_properties.chi1n 3.575
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.150
_pdbe_chem_comp_rdkit_properties.kappa1 0.492
_pdbe_chem_comp_rdkit_properties.kappa2 1.467
_pdbe_chem_comp_rdkit_properties.kappa3 126.372
_pdbe_chem_comp_rdkit_properties.Phi 0.180
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DMS UniChem DrugBank DB01093
DMS UniChem 'KEGG LIGAND' C11143
DMS UniChem ChEBI 28262
DMS UniChem ZINC ZINC000005224188
DMS UniChem atlas DMSO
DMS UniChem atlas 'DMSO control'
DMS UniChem atlas 'dimethyl sulfoxide'
DMS UniChem fdasrs YOW8V9698H
DMS UniChem SureChEMBL SCHEMBL59
DMS UniChem PharmGKB PA449342
DMS UniChem HMDB HMDB0002151
DMS UniChem NMRShiftDB 10016695
DMS UniChem LINCS LSM-36361
DMS UniChem ACTor 164071-41-4
DMS UniChem Nikkaji J1.933J
DMS UniChem BindingDb 50026472
DMS UniChem 'EPA CompTox Dashboard' DTXSID2021735
DMS UniChem DrugCentral 906
DMS UniChem MetaboLights MTBLC28262
DMS UniChem BRENDA 1217
DMS UniChem BRENDA 207739
DMS UniChem BRENDA 207740
DMS UniChem BRENDA 21960
DMS UniChem BRENDA 277429
DMS UniChem BRENDA 896
DMS UniChem BRENDA 90295
DMS UniChem BRENDA 985
DMS UniChem Rhea 28262
DMS UniChem ChemicalBook CB64849867
DMS UniChem ChemicalBook CB7854105
DMS UniChem DailyMed 'DIMETHYL SULFOXIDE'
DMS UniChem ClinicalTrials 'DIMETHYL SULFOXIDE'
DMS UniChem ClinicalTrials RIMSO-50
DMS UniChem ClinicalTrials 'SQ 9453'
DMS UniChem ClinicalTrials SQ-9453
DMS UniChem rxnorm 'DIMETHYL SULFOXIDE'
DMS UniChem rxnorm RIMSO-50
DMS UniChem 'Probes And Drugs' PD009810
DMS UniChem Nikkaji J1.130.885F
DMS UniChem eMolecules 483582
DMS UniChem 'PubChem TPHARMA' 14747335
DMS UniChem PubChem 679
DMS UniChem Mcule MCULE-2005841258
DMS UniChem ACTor 67-68-5
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DMS S -0.133 -0.022 0.953 ETKDGv3 1
DMS O -0.105 -1.504 1.300 ETKDGv3 2
DMS C1 -1.397 0.089 -0.325 ETKDGv3 3
DMS C2 1.414 0.233 0.064 ETKDGv3 4
DMS H11 -2.389 -0.145 0.114 ETKDGv3 5
DMS H12 -1.415 1.119 -0.740 ETKDGv3 6
DMS H13 -1.176 -0.632 -1.140 ETKDGv3 7
DMS H21 1.495 -0.495 -0.770 ETKDGv3 8
DMS H22 2.267 0.093 0.759 ETKDGv3 9
DMS H23 1.440 1.264 -0.345 ETKDGv3 10
#