data_DMF
#
_chem_comp.id DMF
_chem_comp.name DIMETHYLFORMAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C3 H7 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 73.094
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DMF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7EST
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DMF C1 C1 C 0 1 N N N N N N 11.740 46.781 3.521 -0.721 0.000 1.696 C1 DMF 1
DMF C2 C2 C 0 1 N N N N N N 12.462 49.003 4.578 1.461 0.000 0.402 C2 DMF 2
DMF C C C 0 1 N N N N N N 10.213 48.680 3.693 -0.691 0.000 -0.739 C DMF 3
DMF O O O 0 1 N N N N N N 9.888 49.148 2.607 -0.097 0.000 -1.797 O DMF 4
DMF N N N 0 1 N N N N N N 11.437 48.200 3.863 -0.003 0.000 0.419 N DMF 5
DMF H11 1H1 H 0 1 N N N N N N 10.970 46.178 2.984 -1.347 -0.890 1.761 H11 DMF 6
DMF H12 2H1 H 0 1 N N N N N N 12.691 46.746 2.941 -0.003 0.000 2.516 H12 DMF 7
DMF H13 3H1 H 0 1 N N N N N N 12.033 46.242 4.452 -1.346 0.890 1.761 H13 DMF 8
DMF H21 1H2 H 0 1 N N N N N N 12.235 50.064 4.833 1.812 0.000 -0.629 H21 DMF 9
DMF H22 2H2 H 0 1 N N N N N N 12.755 48.464 5.509 1.830 0.890 0.911 H22 DMF 10
DMF H23 3H2 H 0 1 N N N N N N 13.413 48.968 3.998 1.830 -0.890 0.911 H23 DMF 11
DMF HC HC H 0 1 N N N N N N 9.440 48.690 4.480 -1.771 0.000 -0.727 HC DMF 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DMF C1 N SING N N 1
DMF C1 H11 SING N N 2
DMF C1 H12 SING N N 3
DMF C1 H13 SING N N 4
DMF C2 N SING N N 5
DMF C2 H21 SING N N 6
DMF C2 H22 SING N N 7
DMF C2 H23 SING N N 8
DMF C O DOUB N N 9
DMF C N SING N N 10
DMF C HC SING N N 11
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DMF SMILES ACDLabs 10.04 O=CN(C)C
DMF SMILES_CANONICAL CACTVS 3.341 CN(C)C=O
DMF SMILES CACTVS 3.341 CN(C)C=O
DMF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN(C)C=O
DMF SMILES "OpenEye OEToolkits" 1.5.0 CN(C)C=O
DMF InChI InChI 1.03 InChI=1S/C3H7NO/c1-4(2)3-5/h3H,1-2H3
DMF InChIKey InChI 1.03 ZMXDDKWLCZADIW-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DMF "SYSTEMATIC NAME" ACDLabs 10.04 N,N-dimethylformamide
DMF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N,N-dimethylmethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DMF 'Create component' 1999-07-08 RCSB
DMF 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id DMF
_pdbe_chem_comp_drugbank_details.drugbank_id DB01844
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N,N-dimethylformamide
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 68-12-2
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
DMF Dimethylformamide DrugBank ?
DMF N-Formyldimethylamine DrugBank ?
DMF N,N-Dimethylmethanamide DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DMF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01844
_pdbe_chem_comp_drugbank_classification.parent 'Tertiary carboxylic acid amides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as tertiary carboxylic acid amides. These are compounds containing an amide derivative of carboxylic acid, with the general structure RN(R1)C(R2)=O (R1-R2 any atom but H).'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DMF DB01844 Renin Humans P00797 yes 1
DMF DB01844 'Chymotrypsin-like elastase family member 1' Humans Q9UNI1 yes 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DMF C1 C 3.000 0.660 1
DMF C2 C 4.299 -1.590 2
DMF C C 5.598 0.660 3
DMF O O 6.897 -0.090 4
DMF N N 4.299 -0.090 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DMF C1 N SINGLE NONE 1
DMF C2 N SINGLE NONE 2
DMF C O DOUBLE NONE 3
DMF C N SINGLE NONE 4
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id DMF
_pdbe_chem_comp_rdkit_properties.exactmw 73.053
_pdbe_chem_comp_rdkit_properties.amw 73.095
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 41.225
_pdbe_chem_comp_rdkit_properties.tpsa 20.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.296
_pdbe_chem_comp_rdkit_properties.CrippenMR 19.751
_pdbe_chem_comp_rdkit_properties.chi0v 2.355
_pdbe_chem_comp_rdkit_properties.chi1v 0.875
_pdbe_chem_comp_rdkit_properties.chi2v 0.091
_pdbe_chem_comp_rdkit_properties.chi3v 0.091
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 9.355
_pdbe_chem_comp_rdkit_properties.chi1n 4.375
_pdbe_chem_comp_rdkit_properties.chi2n 0.091
_pdbe_chem_comp_rdkit_properties.chi3n 0.091
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.530
_pdbe_chem_comp_rdkit_properties.kappa1 0.491
_pdbe_chem_comp_rdkit_properties.kappa2 1.758
_pdbe_chem_comp_rdkit_properties.kappa3 3.470
_pdbe_chem_comp_rdkit_properties.Phi 0.173
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DMF UniChem DrugBank DB01844
DMF UniChem 'KEGG LIGAND' C03134
DMF UniChem ChEBI 17741
DMF UniChem ZINC ZINC000000901648
DMF UniChem atlas dimethylformamide
DMF UniChem fdasrs 8696NH0Y2X
DMF UniChem SureChEMBL SCHEMBL5
DMF UniChem HMDB HMDB0001888
DMF UniChem 'PubChem TPHARMA' 15218622
DMF UniChem NMRShiftDB 10009017
DMF UniChem ACTor 114057-15-7
DMF UniChem BRENDA 12511
DMF UniChem BRENDA 3631
DMF UniChem BRENDA 44058
DMF UniChem BRENDA 44441
DMF UniChem BRENDA 59318
DMF UniChem BRENDA 5998
DMF UniChem Rhea 17741
DMF UniChem ChemicalBook CB2854115
DMF UniChem 'Probes And Drugs' PD008730
DMF UniChem 'EPA CompTox Dashboard' DTXSID6020515
DMF UniChem eMolecules 483489
DMF UniChem PubChem 6228
DMF UniChem Mcule MCULE-6290117712
DMF UniChem ACTor 68-12-2
DMF UniChem Nikkaji J1.923B
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DMF C1 -1.055 -0.930 0.040 ETKDGv3 1
DMF C2 1.384 -0.203 0.227 ETKDGv3 2
DMF C -0.383 1.462 -0.338 ETKDGv3 3
DMF O -1.582 1.776 -0.562 ETKDGv3 4
DMF N -0.023 0.109 -0.024 ETKDGv3 5
DMF H11 -1.802 -0.667 0.818 ETKDGv3 6
DMF H12 -0.622 -1.921 0.292 ETKDGv3 7
DMF H13 -1.564 -1.013 -0.944 ETKDGv3 8
DMF H21 1.988 0.047 -0.670 ETKDGv3 9
DMF H22 1.750 0.392 1.090 ETKDGv3 10
DMF H23 1.530 -1.280 0.458 ETKDGv3 11
DMF HC 0.380 2.229 -0.386 ETKDGv3 12
#