data_DI4
#
_chem_comp.id DI4
_chem_comp.name 'AC-(D)PHE-PRO-BOROHOMOLYS-OH'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C22 H35 B N4 O5'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 446.348
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DI4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1LHF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DI4 B1 B1 B 0 1 N N N N N N 14.655 -10.045 18.755 -1.418 1.384 -3.846 B1 DI4 1
DI4 C C C 0 1 N N R N N N 14.444 -11.037 19.924 -0.472 0.214 -3.399 C DI4 2
DI4 C2 C2 C 0 1 N N N N N N 13.303 -10.497 20.820 -0.169 -0.684 -4.600 C2 DI4 3
DI4 C3 C3 C 0 1 N N N N N N 12.235 -11.505 21.230 0.517 0.137 -5.692 C3 DI4 4
DI4 C4 C4 C 0 1 N N N N N N 12.341 -12.008 22.652 0.819 -0.760 -6.893 C4 DI4 5
DI4 C5 C5 C 0 1 N N N N N N 11.136 -11.651 23.408 1.506 0.061 -7.985 C5 DI4 6
DI4 C6 C6 C 0 1 N N N N N N 10.641 -12.357 24.540 1.808 -0.837 -9.186 C6 DI4 7
DI4 C7 C7 C 0 1 N N S N N N 17.624 -12.806 21.361 -1.639 -1.054 0.018 C7 DI4 8
DI4 C8 C8 C 0 1 N N N N N N 16.362 -12.512 20.497 -0.963 -0.244 -1.057 C8 DI4 9
DI4 C9 C9 C 0 1 N N N N N N 18.907 -12.745 20.495 -3.171 -0.981 -0.154 C9 DI4 10
DI4 C10 C10 C 0 1 N N N N N N 19.397 -14.169 20.258 -3.685 -0.908 1.307 C10 DI4 11
DI4 C11 C11 C 0 1 N N N N N N 18.633 -15.063 21.211 -2.576 -0.065 1.985 C11 DI4 12
DI4 C12 C12 C 0 1 N N N N N N 16.901 -14.589 22.967 -0.091 -0.412 1.884 C12 DI4 13
DI4 C13 C13 C 0 1 N N N N N N 17.412 -15.978 25.138 -0.011 -0.926 4.309 C13 DI4 14
DI4 C14 C14 C 0 1 N N R N N N 17.000 -16.011 23.616 0.087 0.181 3.257 C14 DI4 15
DI4 C15 C15 C 0 1 N N N N N N 15.633 -17.949 22.933 2.520 0.094 3.156 C15 DI4 16
DI4 C16 C16 C 0 1 N N N N N N 14.266 -18.608 22.893 3.872 0.754 3.246 C16 DI4 17
DI4 C17 C17 C 0 1 Y N N N N N 21.215 -15.301 24.964 1.595 0.305 7.495 C17 DI4 18
DI4 C18 C18 C 0 1 Y N N N N N 21.354 -14.265 25.873 0.496 0.756 8.202 C18 DI4 19
DI4 C19 C19 C 0 1 Y N N N N N 20.237 -13.775 26.552 -0.767 0.662 7.649 C19 DI4 20
DI4 C20 C20 C 0 1 Y N N N N N 18.977 -14.325 26.308 -0.931 0.117 6.389 C20 DI4 21
DI4 C21 C21 C 0 1 Y N N N N N 18.825 -15.376 25.406 0.167 -0.332 5.682 C21 DI4 22
DI4 C22 C22 C 0 1 Y N N N N N 19.955 -15.853 24.718 1.430 -0.243 6.237 C22 DI4 23
DI4 N N N 0 1 N N N N N N 15.660 -11.375 20.734 -1.129 -0.573 -2.353 N DI4 24
DI4 N1 N1 N 0 1 N N N N N N 10.299 -11.670 25.730 2.468 -0.047 -10.234 N1 DI4 25
DI4 N2 N2 N 0 1 N N N N N N 17.688 -14.187 21.936 -1.323 -0.504 1.345 N2 DI4 26
DI4 N3 N3 N 0 1 N N N N N N 15.699 -16.691 23.419 1.401 0.822 3.345 N3 DI4 27
DI4 O O O 0 1 N N N N N N 13.434 -10.008 17.959 -2.698 1.094 -4.388 O DI4 28
DI4 O1 O1 O 0 1 N N N N N N 15.724 -10.326 17.830 -0.994 2.732 -3.708 O1 DI4 29
DI4 O2 O2 O 0 1 N N N N N N 16.048 -13.328 19.611 -0.268 0.703 -0.756 O2 DI4 30
DI4 O3 O3 O 0 1 N N N N N N 16.084 -13.815 23.464 0.872 -0.807 1.264 O3 DI4 31
DI4 O4 O4 O 0 1 N N N N N N 16.651 -18.546 22.528 2.438 -1.091 2.915 O4 DI4 32
DI4 H H H 0 1 N N N N N N 14.175 -12.014 19.459 0.458 0.627 -3.011 H DI4 33
DI4 H21 1H2 H 0 1 N N N N N N 13.733 -10.013 21.727 0.487 -1.497 -4.289 H21 DI4 34
DI4 H22A 2H2 H 0 0 N N N N N N 12.823 -9.617 20.330 -1.100 -1.098 -4.987 H22A DI4 35
DI4 H31 1H3 H 0 1 N N N N N N 11.218 -11.084 21.045 -0.139 0.950 -6.002 H31 DI4 36
DI4 H32 2H3 H 0 1 N N N N N N 12.223 -12.363 20.518 1.448 0.551 -5.304 H32 DI4 37
DI4 H41 1H4 H 0 1 N N N N N N 12.548 -13.102 22.691 1.476 -1.573 -6.582 H41 DI4 38
DI4 H42 2H4 H 0 1 N N N N N N 13.269 -11.646 23.153 -0.111 -1.174 -7.280 H42 DI4 39
DI4 H51 1H5 H 0 1 N N N N N N 11.257 -10.588 23.721 0.849 0.873 -8.295 H51 DI4 40
DI4 H52 2H5 H 0 1 N N N N N N 10.299 -11.599 22.672 2.437 0.475 -7.597 H52 DI4 41
DI4 H61 1H6 H 0 1 N N N N N N 9.756 -12.954 24.217 2.465 -1.649 -8.875 H61 DI4 42
DI4 H62 2H6 H 0 1 N N N N N N 11.373 -13.156 24.798 0.877 -1.250 -9.574 H62 DI4 43
DI4 H7 H7 H 0 1 N N N N N N 17.557 -12.038 22.167 -1.309 -2.091 -0.035 H7 DI4 44
DI4 H91 1H9 H 0 1 N N N N N N 18.756 -12.180 19.545 -3.548 -1.874 -0.651 H91 DI4 45
DI4 H92 2H9 H 0 1 N N N N N N 19.692 -12.090 20.938 -3.451 -0.084 -0.706 H92 DI4 46
DI4 H101 1H10 H 0 0 N N N N N N 19.313 -14.490 19.193 -3.745 -1.902 1.750 H101 DI4 47
DI4 H102 2H10 H 0 0 N N N N N N 20.503 -14.273 20.350 -4.648 -0.401 1.358 H102 DI4 48
DI4 H111 1H11 H 0 0 N N N N N N 18.138 -15.926 20.707 -2.547 -0.267 3.056 H111 DI4 49
DI4 H112 2H11 H 0 0 N N N N N N 19.292 -15.656 21.885 -2.743 0.996 1.804 H112 DI4 50
DI4 H131 1H13 H 0 0 N N N N N N 16.640 -15.443 25.739 -0.989 -1.403 4.243 H131 DI4 51
DI4 H132 2H13 H 0 0 N N N N N N 17.330 -16.995 25.586 0.767 -1.667 4.129 H132 DI4 52
DI4 H14 H14 H 0 1 N N N N N N 17.819 -16.576 23.113 -0.691 0.922 3.437 H14 DI4 53
DI4 H161 1H16 H 0 0 N N N N N N 14.211 -19.646 22.491 4.650 0.012 3.067 H161 DI4 54
DI4 H162 2H16 H 0 0 N N N N N N 13.811 -18.580 23.910 3.942 1.543 2.498 H162 DI4 55
DI4 H163 3H16 H 0 0 N N N N N N 13.557 -17.956 22.330 4.001 1.183 4.240 H163 DI4 56
DI4 H17 H17 H 0 1 N N N N N N 22.104 -15.685 24.437 2.582 0.379 7.927 H17 DI4 57
DI4 H18 H18 H 0 1 N N N N N N 22.351 -13.831 26.055 0.624 1.182 9.186 H18 DI4 58
DI4 H19 H19 H 0 1 N N N N N N 20.349 -12.954 27.280 -1.626 1.014 8.201 H19 DI4 59
DI4 H20 H20 H 0 1 N N N N N N 18.093 -13.925 26.832 -1.918 0.043 5.957 H20 DI4 60
DI4 H22 H22 H 0 1 N N N N N N 19.852 -16.666 23.979 2.289 -0.595 5.685 H22 DI4 61
DI4 HN HN H 0 1 N N N N N N 16.030 -10.798 21.489 -1.685 -1.331 -2.593 HN DI4 62
DI4 HN11 1HN1 H 0 0 N N N N N N 9.944 -12.176 26.541 2.647 -0.677 -11.002 HN11 DI4 63
DI4 HN12 2HN1 H 0 0 N N N N N N 9.628 -10.938 25.493 1.789 0.623 -10.562 HN12 DI4 64
DI4 HN3 HN3 H 0 1 N N N N N N 14.795 -16.268 23.630 1.466 1.770 3.538 HN3 DI4 65
DI4 HO HO H 0 1 N N N N N N 13.563 -9.399 17.241 -3.112 1.943 -4.596 HO DI4 66
DI4 HO1 HO1 H 0 1 N N N N N N 15.853 -9.717 17.112 -0.107 2.708 -3.324 HO1 DI4 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DI4 B1 C SING N N 1
DI4 B1 O SING N N 2
DI4 B1 O1 SING N N 3
DI4 C C2 SING N N 4
DI4 C N SING N N 5
DI4 C H SING N N 6
DI4 C2 C3 SING N N 7
DI4 C2 H21 SING N N 8
DI4 C2 H22A SING N N 9
DI4 C3 C4 SING N N 10
DI4 C3 H31 SING N N 11
DI4 C3 H32 SING N N 12
DI4 C4 C5 SING N N 13
DI4 C4 H41 SING N N 14
DI4 C4 H42 SING N N 15
DI4 C5 C6 SING N N 16
DI4 C5 H51 SING N N 17
DI4 C5 H52 SING N N 18
DI4 C6 N1 SING N N 19
DI4 C6 H61 SING N N 20
DI4 C6 H62 SING N N 21
DI4 C7 C8 SING N N 22
DI4 C7 C9 SING N N 23
DI4 C7 N2 SING N N 24
DI4 C7 H7 SING N N 25
DI4 C8 N SING N N 26
DI4 C8 O2 DOUB N N 27
DI4 C9 C10 SING N N 28
DI4 C9 H91 SING N N 29
DI4 C9 H92 SING N N 30
DI4 C10 C11 SING N N 31
DI4 C10 H101 SING N N 32
DI4 C10 H102 SING N N 33
DI4 C11 N2 SING N N 34
DI4 C11 H111 SING N N 35
DI4 C11 H112 SING N N 36
DI4 C12 C14 SING N N 37
DI4 C12 N2 SING N N 38
DI4 C12 O3 DOUB N N 39
DI4 C13 C14 SING N N 40
DI4 C13 C21 SING N N 41
DI4 C13 H131 SING N N 42
DI4 C13 H132 SING N N 43
DI4 C14 N3 SING N N 44
DI4 C14 H14 SING N N 45
DI4 C15 C16 SING N N 46
DI4 C15 N3 SING N N 47
DI4 C15 O4 DOUB N N 48
DI4 C16 H161 SING N N 49
DI4 C16 H162 SING N N 50
DI4 C16 H163 SING N N 51
DI4 C17 C18 DOUB Y N 52
DI4 C17 C22 SING Y N 53
DI4 C17 H17 SING N N 54
DI4 C18 C19 SING Y N 55
DI4 C18 H18 SING N N 56
DI4 C19 C20 DOUB Y N 57
DI4 C19 H19 SING N N 58
DI4 C20 C21 SING Y N 59
DI4 C20 H20 SING N N 60
DI4 C21 C22 DOUB Y N 61
DI4 C22 H22 SING N N 62
DI4 N HN SING N N 63
DI4 N1 HN11 SING N N 64
DI4 N1 HN12 SING N N 65
DI4 N3 HN3 SING N N 66
DI4 O HO SING N N 67
DI4 O1 HO1 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DI4 SMILES ACDLabs 10.04 'O=C(NC(B(O)O)CCCCCN)C2N(C(=O)C(NC(=O)C)Cc1ccccc1)CCC2'
DI4 SMILES_CANONICAL CACTVS 3.341 'CC(=O)N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCCCN)B(O)O'
DI4 SMILES CACTVS 3.341 'CC(=O)N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCCCN)B(O)O'
DI4 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'B([C@H](CCCCCN)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](Cc2ccccc2)NC(=O)C)(O)O'
DI4 SMILES 'OpenEye OEToolkits' 1.5.0 'B(C(CCCCCN)NC(=O)C1CCCN1C(=O)C(Cc2ccccc2)NC(=O)C)(O)O'
DI4 InChI InChI 1.03 'InChI=1S/C22H35BN4O5/c1-16(28)25-18(15-17-9-4-2-5-10-17)22(30)27-14-8-11-19(27)21(29)26-20(23(31)32)12-6-3-7-13-24/h2,4-5,9-10,18-20,31-32H,3,6-8,11-15,24H2,1H3,(H,25,28)(H,26,29)/t18-,19+,20+/m1/s1'
DI4 InChIKey InChI 1.03 AILSWIBFGYYZTK-AABGKKOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DI4 'SYSTEMATIC NAME' ACDLabs 10.04 'N-acetyl-D-phenylalanyl-N-[(1R)-6-amino-1-(dihydroxyboranyl)hexyl]-L-prolinamide'
DI4 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '[(1R)-1-[[(2S)-1-[(2R)-2-acetamido-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-6-amino-hexyl]boronic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DI4 'Create component' 1999-07-08 RCSB
DI4 'Modify descriptor' 2011-06-04 RCSB
DI4 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id DI4
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom B1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id DI4
_pdbe_chem_comp_drugbank_details.drugbank_id DB07659
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name AC-(D)PHE-PRO-BOROHOMOLYS-OH
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id DI4
_pdbe_chem_comp_synonyms.name AC-(D)PHE-PRO-BOROHOMOLYS-OH
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DI4
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07659
_pdbe_chem_comp_drugbank_classification.parent Dipeptides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id DI4
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07659
_pdbe_chem_comp_drugbank_targets.name Prothrombin
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00734
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DI4 B1 B 13.846 -2.768 1
DI4 C C 12.420 -2.305 2
DI4 C2 C 12.108 -0.838 3
DI4 C3 C 13.223 0.166 4
DI4 C4 C 12.911 1.633 5
DI4 C5 C 14.025 2.637 6
DI4 C6 C 13.713 4.104 7
DI4 C7 C 9.566 -1.378 8
DI4 C8 C 9.878 -2.845 9
DI4 C9 C 10.570 -0.263 10
DI4 C10 C 9.820 1.036 11
DI4 C11 C 8.353 0.724 12
DI4 C12 C 6.897 -1.518 13
DI4 C13 C 4.299 -1.518 14
DI4 C14 C 5.598 -0.768 15
DI4 C15 C 4.299 1.482 16
DI4 C16 C 3.000 0.732 17
DI4 C17 C 5.598 -5.268 18
DI4 C18 C 4.299 -6.018 19
DI4 C19 C 3.000 -5.268 20
DI4 C20 C 3.000 -3.768 21
DI4 C21 C 4.299 -3.018 22
DI4 C22 C 5.598 -3.768 23
DI4 N N 11.305 -3.309 24
DI4 N1 N 14.828 5.108 25
DI4 N2 N 8.196 -0.768 26
DI4 N3 N 5.598 0.732 27
DI4 O O 14.961 -1.765 28
DI4 O1 O 14.158 -4.236 29
DI4 O2 O 8.764 -3.849 30
DI4 O3 O 6.897 -3.018 31
DI4 O4 O 4.299 2.982 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DI4 B1 C SINGLE NONE 1
DI4 B1 O SINGLE NONE 2
DI4 B1 O1 SINGLE NONE 3
DI4 C C2 SINGLE BEGINWEDGE 4
DI4 C N SINGLE NONE 5
DI4 C2 C3 SINGLE NONE 6
DI4 C3 C4 SINGLE NONE 7
DI4 C4 C5 SINGLE NONE 8
DI4 C5 C6 SINGLE NONE 9
DI4 C6 N1 SINGLE NONE 10
DI4 C7 C8 SINGLE BEGINWEDGE 11
DI4 C7 C9 SINGLE NONE 12
DI4 C7 N2 SINGLE NONE 13
DI4 C8 N SINGLE NONE 14
DI4 C8 O2 DOUBLE NONE 15
DI4 C9 C10 SINGLE NONE 16
DI4 C10 C11 SINGLE NONE 17
DI4 C11 N2 SINGLE NONE 18
DI4 C12 C14 SINGLE NONE 19
DI4 C12 N2 SINGLE NONE 20
DI4 C12 O3 DOUBLE NONE 21
DI4 C14 C13 SINGLE BEGINWEDGE 22
DI4 C13 C21 SINGLE NONE 23
DI4 C14 N3 SINGLE NONE 24
DI4 C15 C16 SINGLE NONE 25
DI4 C15 N3 SINGLE NONE 26
DI4 C15 O4 DOUBLE NONE 27
DI4 C17 C18 DOUBLE NONE 28
DI4 C17 C22 SINGLE NONE 29
DI4 C18 C19 SINGLE NONE 30
DI4 C19 C20 DOUBLE NONE 31
DI4 C20 C21 SINGLE NONE 32
DI4 C21 C22 DOUBLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DI4 MurckoScaffold S1 scaffold O=C(CCc1ccccc1)N1CCCC1 InChI=1S/C13H17NO/c15-13(14-10-4-5-11-14)9-8-12-6-2-1-3-7-12/h1-3,6-7H,4-5,8-11H2 AJQCDEYAAFXBBP-UHFFFAOYSA-N
DI4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
DI4 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
DI4 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DI4 C7 S1 1
DI4 C9 S1 1
DI4 C10 S1 1
DI4 C11 S1 1
DI4 C12 S1 1
DI4 C13 S1 1
DI4 C14 S1 1
DI4 C17 S1 1
DI4 C18 S1 1
DI4 C19 S1 1
DI4 C20 S1 1
DI4 C21 S1 1
DI4 C22 S1 1
DI4 N2 S1 1
DI4 O3 S1 1
DI4 N F1 1
DI4 C8 F1 1
DI4 O2 F1 1
DI4 C7 F1 1
DI4 N2 F1 2
DI4 C12 F1 2
DI4 O3 F1 2
DI4 C14 F1 2
DI4 N3 F1 3
DI4 C15 F1 3
DI4 O4 F1 3
DI4 C16 F1 3
DI4 O2 F2 1
DI4 C8 F2 1
DI4 C7 F2 1
DI4 N2 F2 1
DI4 O3 F2 2
DI4 C12 F2 2
DI4 C14 F2 2
DI4 N3 F2 2
DI4 C17 F3 1
DI4 C18 F3 1
DI4 C19 F3 1
DI4 C20 F3 1
DI4 C21 F3 1
DI4 C22 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DI4
_pdbe_chem_comp_rdkit_properties.exactmw 446.270
_pdbe_chem_comp_rdkit_properties.amw 446.357
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.591
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.009
_pdbe_chem_comp_rdkit_properties.tpsa 144.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.314
_pdbe_chem_comp_rdkit_properties.CrippenMR 121.864
_pdbe_chem_comp_rdkit_properties.chi0v 15.407
_pdbe_chem_comp_rdkit_properties.chi1v 7.911
_pdbe_chem_comp_rdkit_properties.chi2v 2.954
_pdbe_chem_comp_rdkit_properties.chi3v 2.954
_pdbe_chem_comp_rdkit_properties.chi4v 1.780
_pdbe_chem_comp_rdkit_properties.chi0n 50.407
_pdbe_chem_comp_rdkit_properties.chi1n 25.017
_pdbe_chem_comp_rdkit_properties.chi2n 2.954
_pdbe_chem_comp_rdkit_properties.chi3n 2.954
_pdbe_chem_comp_rdkit_properties.chi4n 1.780
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.425
_pdbe_chem_comp_rdkit_properties.kappa1 5.616
_pdbe_chem_comp_rdkit_properties.kappa2 13.198
_pdbe_chem_comp_rdkit_properties.kappa3 7.924
_pdbe_chem_comp_rdkit_properties.Phi 2.316
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DI4 UniChem DrugBank DB07659
DI4 UniChem ZINC ZINC000169748502
DI4 UniChem PubChem 5288066
DI4 UniChem BRENDA 99942
DI4 UniChem 'Probes And Drugs' PD005579
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DI4 B1 3.115 1.571 0.882 ETKDGv3 1
DI4 C 2.175 0.376 1.403 ETKDGv3 2
DI4 C2 2.988 -0.891 1.756 ETKDGv3 3
DI4 C3 3.791 -1.498 0.579 ETKDGv3 4
DI4 C4 5.289 -1.166 0.663 ETKDGv3 5
DI4 C5 6.055 -1.778 -0.519 ETKDGv3 6
DI4 C6 7.533 -1.352 -0.551 ETKDGv3 7
DI4 C7 -0.912 0.705 -0.973 ETKDGv3 8
DI4 C8 0.042 0.993 0.157 ETKDGv3 9
DI4 C9 -0.319 1.179 -2.306 ETKDGv3 10
DI4 C10 -1.413 1.991 -2.994 ETKDGv3 11
DI4 C11 -2.394 2.380 -1.901 ETKDGv3 12
DI4 C12 -3.115 1.275 0.251 ETKDGv3 13
DI4 C13 -3.952 -1.081 -0.166 ETKDGv3 14
DI4 C14 -3.417 -0.072 0.873 ETKDGv3 15
DI4 C15 -1.776 -0.072 2.807 ETKDGv3 16
DI4 C16 -0.691 -0.763 3.566 ETKDGv3 17
DI4 C17 -6.427 0.401 -2.713 ETKDGv3 18
DI4 C18 -7.579 0.387 -2.032 ETKDGv3 19
DI4 C19 -7.615 -0.140 -0.652 ETKDGv3 20
DI4 C20 -6.496 -0.604 -0.082 ETKDGv3 21
DI4 C21 -5.214 -0.591 -0.831 ETKDGv3 22
DI4 C22 -5.189 -0.108 -2.087 ETKDGv3 23
DI4 N 1.112 0.077 0.435 ETKDGv3 24
DI4 N1 8.302 -1.914 0.559 ETKDGv3 25
DI4 N2 -2.163 1.440 -0.818 ETKDGv3 26
DI4 N3 -2.239 -0.609 1.559 ETKDGv3 27
DI4 O 3.040 2.023 -0.506 ETKDGv3 28
DI4 O1 4.084 2.181 1.789 ETKDGv3 29
DI4 O2 -0.055 2.070 0.807 ETKDGv3 30
DI4 O3 -3.782 2.274 0.633 ETKDGv3 31
DI4 O4 -2.314 0.957 3.297 ETKDGv3 32
DI4 H 1.698 0.730 2.342 ETKDGv3 33
DI4 H21 3.658 -0.671 2.617 ETKDGv3 34
DI4 H22A 2.273 -1.660 2.121 ETKDGv3 35
DI4 H31 3.678 -2.604 0.606 ETKDGv3 36
DI4 H32 3.389 -1.152 -0.397 ETKDGv3 37
DI4 H41 5.692 -1.571 1.615 ETKDGv3 38
DI4 H42 5.431 -0.065 0.659 ETKDGv3 39
DI4 H51 5.983 -2.887 -0.483 ETKDGv3 40
DI4 H52 5.583 -1.441 -1.468 ETKDGv3 41
DI4 H61 7.612 -0.243 -0.536 ETKDGv3 42
DI4 H62 7.982 -1.703 -1.504 ETKDGv3 43
DI4 H7 -1.116 -0.384 -1.029 ETKDGv3 44
DI4 H91 0.570 1.833 -2.154 ETKDGv3 45
DI4 H92 -0.013 0.315 -2.935 ETKDGv3 46
DI4 H101 -0.997 2.888 -3.502 ETKDGv3 47
DI4 H102 -1.929 1.353 -3.745 ETKDGv3 48
DI4 H111 -3.439 2.306 -2.272 ETKDGv3 49
DI4 H112 -2.194 3.413 -1.543 ETKDGv3 50
DI4 H131 -3.177 -1.311 -0.926 ETKDGv3 51
DI4 H132 -4.178 -2.039 0.351 ETKDGv3 52
DI4 H14 -4.220 0.061 1.633 ETKDGv3 53
DI4 H161 -0.057 -0.016 4.089 ETKDGv3 54
DI4 H162 -0.052 -1.352 2.878 ETKDGv3 55
DI4 H163 -1.142 -1.446 4.315 ETKDGv3 56
DI4 H17 -6.398 0.789 -3.723 ETKDGv3 57
DI4 H18 -8.486 0.761 -2.489 ETKDGv3 58
DI4 H19 -8.548 -0.150 -0.104 ETKDGv3 59
DI4 H20 -6.529 -0.988 0.930 ETKDGv3 60
DI4 H22 -4.266 -0.081 -2.652 ETKDGv3 61
DI4 HN 1.100 -0.848 -0.053 ETKDGv3 62
DI4 HN11 8.000 -1.463 1.452 ETKDGv3 63
DI4 HN12 8.112 -2.940 0.630 ETKDGv3 64
DI4 HN3 -1.765 -1.459 1.178 ETKDGv3 65
DI4 HO 3.687 1.452 -0.992 ETKDGv3 66
DI4 HO1 3.595 2.934 2.207 ETKDGv3 67
#