data_DBH
#
_chem_comp.id DBH
_chem_comp.name '2,3-DIHYDROXY-BENZOIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C7 H6 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-03-20
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 154.120
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DBH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DBH O17 O17 O 0 1 N Y N Y N Y 52.991 107.635 34.099 -0.772 0.014 2.961 O17 DBH 1
DBH C21 C21 C 0 1 N N N Y N Y 52.280 106.499 33.931 0.130 -0.004 1.960 C21 DBH 2
DBH O9 O9 O 0 1 N N N Y N Y 51.039 106.499 33.873 1.318 -0.019 2.214 O9 DBH 3
DBH C18 C18 C 0 1 Y N N N N N 53.109 105.261 33.795 -0.323 -0.005 0.558 C18 DBH 4
DBH C15 C15 C 0 1 Y N N N N N 52.665 104.192 32.948 -1.690 0.011 0.262 C15 DBH 5
DBH C12 C12 C 0 1 Y N N N N N 53.386 103.060 32.784 -2.110 0.010 -1.049 C12 DBH 6
DBH C3 C3 C 0 1 Y N N N N N 54.318 105.091 34.436 0.611 -0.018 -0.484 C3 DBH 7
DBH O3 O3 O 0 1 N N N N N N 54.887 105.966 35.250 1.940 -0.035 -0.208 O3 DBH 8
DBH C6 C6 C 0 1 Y N N N N N 55.063 103.913 34.262 0.170 -0.025 -1.804 C6 DBH 9
DBH C9 C9 C 0 1 Y N N N N N 54.599 102.894 33.431 -1.185 -0.008 -2.080 C9 DBH 10
DBH O6 O6 O 0 1 N N N N N N 56.220 103.889 34.947 1.072 -0.044 -2.822 O6 DBH 11
DBH HO17 HO17 H 0 0 N Y N Y N Y 53.940 107.635 34.143 -0.474 0.015 3.881 HO17 DBH 12
DBH HC15 HC15 H 0 0 N N N N N N 51.715 104.243 32.391 -2.416 0.025 1.061 HC15 DBH 13
DBH HC12 HC12 H 0 0 N N N N N N 52.985 102.273 32.123 -3.166 0.024 -1.274 HC12 DBH 14
DBH HO3 HO3 H 0 1 N N N N N N 55.720 105.849 35.692 2.227 0.886 -0.161 HO3 DBH 15
DBH HC9 HC9 H 0 1 N N N N N N 55.183 101.970 33.288 -1.524 -0.009 -3.106 HC9 DBH 16
DBH HO6 HO6 H 0 1 N N N N N N 56.724 103.092 34.829 1.270 0.877 -3.036 HO6 DBH 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DBH O17 C21 SING N N 1
DBH O17 HO17 SING N N 2
DBH C21 O9 DOUB N N 3
DBH C21 C18 SING N N 4
DBH C18 C15 DOUB Y N 5
DBH C18 C3 SING Y N 6
DBH C15 C12 SING Y N 7
DBH C15 HC15 SING N N 8
DBH C12 C9 DOUB Y N 9
DBH C12 HC12 SING N N 10
DBH C3 O3 SING N N 11
DBH C3 C6 DOUB Y N 12
DBH O3 HO3 SING N N 13
DBH C6 C9 SING Y N 14
DBH C6 O6 SING N N 15
DBH C9 HC9 SING N N 16
DBH O6 HO6 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DBH SMILES ACDLabs 10.04 'O=C(O)c1cccc(O)c1O'
DBH SMILES_CANONICAL CACTVS 3.341 'OC(=O)c1cccc(O)c1O'
DBH SMILES CACTVS 3.341 'OC(=O)c1cccc(O)c1O'
DBH SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc(c(c(c1)O)O)C(=O)O'
DBH SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc(c(c(c1)O)O)C(=O)O'
DBH InChI InChI 1.03 'InChI=1S/C7H6O4/c8-5-3-1-2-4(6(5)9)7(10)11/h1-3,8-9H,(H,10,11)'
DBH InChIKey InChI 1.03 GLDQAMYCGOIJDV-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DBH 'SYSTEMATIC NAME' ACDLabs 10.04 '2,3-dihydroxybenzoic acid'
DBH 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '2,3-dihydroxybenzoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DBH 'Create component' 2002-03-20 RCSB
DBH 'Modify descriptor' 2011-06-04 RCSB
DBH 'Modify backbone' 2023-11-03 PDBE
DBH 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id DBH
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id DBH
_pdbe_chem_comp_drugbank_details.drugbank_id DB01672
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '2,3-Dihydroxy-Benzoic Acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 303-38-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id DBH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01672
_pdbe_chem_comp_drugbank_classification.parent 'Salicylic acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as salicylic acids. These are ortho-hydroxylated benzoic acids.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
DBH DB01672 '2,3-dihydroxybenzoate-AMP ligase' 'Bacillus subtilis (strain 168)' P40871 unknown 1
DBH DB01672 'Neutrophil gelatinase-associated lipocalin' Humans P80188 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DBH O17 O 3.805 -0.233 1
DBH C21 C 5.104 0.517 2
DBH O9 O 5.104 2.018 3
DBH C18 C 6.404 -0.233 4
DBH C15 C 6.404 -1.732 5
DBH C12 C 7.702 -2.482 6
DBH C3 C 7.702 0.517 7
DBH O3 O 7.702 2.018 8
DBH C6 C 9.002 -0.233 9
DBH C9 C 9.002 -1.732 10
DBH O6 O 10.301 0.517 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DBH O17 C21 SINGLE NONE 1
DBH C21 O9 DOUBLE NONE 2
DBH C21 C18 SINGLE NONE 3
DBH C18 C15 DOUBLE NONE 4
DBH C18 C3 SINGLE NONE 5
DBH C15 C12 SINGLE NONE 6
DBH C12 C9 DOUBLE NONE 7
DBH C3 O3 SINGLE NONE 8
DBH C3 C6 DOUBLE NONE 9
DBH C6 C9 SINGLE NONE 10
DBH C6 O6 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DBH MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
DBH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DBH C18 S1 1
DBH C15 S1 1
DBH C12 S1 1
DBH C3 S1 1
DBH C6 S1 1
DBH C9 S1 1
DBH C18 F1 1
DBH C15 F1 1
DBH C12 F1 1
DBH C9 F1 1
DBH C6 F1 1
DBH C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DBH
_pdbe_chem_comp_rdkit_properties.exactmw 154.027
_pdbe_chem_comp_rdkit_properties.amw 154.121
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 71.030
_pdbe_chem_comp_rdkit_properties.tpsa 77.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.184
_pdbe_chem_comp_rdkit_properties.CrippenMR 35.245
_pdbe_chem_comp_rdkit_properties.chi0v 5.133
_pdbe_chem_comp_rdkit_properties.chi1v 2.566
_pdbe_chem_comp_rdkit_properties.chi2v 1.001
_pdbe_chem_comp_rdkit_properties.chi3v 1.001
_pdbe_chem_comp_rdkit_properties.chi4v 0.521
_pdbe_chem_comp_rdkit_properties.chi0n 11.133
_pdbe_chem_comp_rdkit_properties.chi1n 5.291
_pdbe_chem_comp_rdkit_properties.chi2n 1.001
_pdbe_chem_comp_rdkit_properties.chi3n 1.001
_pdbe_chem_comp_rdkit_properties.chi4n 0.521
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 2.731
_pdbe_chem_comp_rdkit_properties.kappa2 2.494
_pdbe_chem_comp_rdkit_properties.kappa3 1.236
_pdbe_chem_comp_rdkit_properties.Phi 0.619
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DBH UniChem DrugBank DB01672
DBH UniChem 'KEGG LIGAND' C00196
DBH UniChem ChEBI 18026
DBH UniChem ZINC ZINC000000388166
DBH UniChem eMolecules 479939
DBH UniChem fdasrs 70D5FBB392
DBH UniChem HMDB HMDB0000397
DBH UniChem NMRShiftDB 20035558
DBH UniChem ACTor 27138-57-4
DBH UniChem BindingDb 92456
DBH UniChem 'EPA CompTox Dashboard' DTXSID70858712
DBH UniChem MetaboLights MTBLC18026
DBH UniChem BRENDA 1367
DBH UniChem BRENDA 3773
DBH UniChem BRENDA 39133
DBH UniChem ChemicalBook CB3481462
DBH UniChem rxnorm '2,3-DIHYDROXYBENZOIC ACID'
DBH UniChem MedChemExpress HY-Y0202
DBH UniChem 'Probes And Drugs' PD002117
DBH UniChem CCDC CACDAM
DBH UniChem Nikkaji J79.590I
DBH UniChem SureChEMBL SCHEMBL37458
DBH UniChem 'PubChem TPHARMA' 14772341
DBH UniChem PubChem 19
DBH UniChem Mcule MCULE-5691151631
DBH UniChem ACTor 303-38-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DBH O17 2.915 -1.540 0.211 ETKDGv3 1
DBH C21 2.212 -0.355 0.005 ETKDGv3 2
DBH O9 2.856 0.705 -0.215 ETKDGv3 3
DBH C18 0.727 -0.347 0.046 ETKDGv3 4
DBH C15 0.065 -1.496 0.283 ETKDGv3 5
DBH C12 -1.405 -1.523 0.330 ETKDGv3 6
DBH C3 -0.055 0.914 -0.173 ETKDGv3 7
DBH O3 0.647 2.099 -0.418 ETKDGv3 8
DBH C6 -1.412 0.877 -0.127 ETKDGv3 9
DBH C9 -2.102 -0.402 0.136 ETKDGv3 10
DBH O6 -2.216 2.004 -0.319 ETKDGv3 11
DBH HO17 3.928 -1.557 0.185 ETKDGv3 12
DBH HC15 0.595 -2.426 0.445 ETKDGv3 13
DBH HC12 -1.920 -2.455 0.522 ETKDGv3 14
DBH HO3 0.221 3.000 -0.578 ETKDGv3 15
DBH HC9 -3.184 -0.430 0.172 ETKDGv3 16
DBH HO6 -1.871 2.934 -0.506 ETKDGv3 17
#