data_DA
#
_chem_comp.id DA
_chem_comp.name "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"
_chem_comp.type 'DNA LINKING'
_chem_comp.pdbx_type ATOMN
_chem_comp.formula 'C10 H14 N5 O6 P'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-01-25
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 331.222
_chem_comp.one_letter_code A
_chem_comp.three_letter_code DA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DA OP3 O3P O 0 1 N Y N N N N -5.588 6.537 9.160 1.845 -1.282 -5.339 OP3 DA 1
DA P P P 0 1 N N N N N N -5.219 8.126 9.083 0.934 -0.156 -4.636 P DA 2
DA OP1 O1P O 0 1 N N N N N N -5.953 8.789 10.199 1.781 0.996 -4.255 OP1 DA 3
DA OP2 O2P O 0 1 N N N N N N -5.398 8.539 7.715 -0.204 0.331 -5.665 OP2 DA 4
DA "O5'" O5* O 0 1 N N N N N N -3.672 8.039 9.404 0.241 -0.771 -3.320 "O5'" DA 5
DA "C5'" C5* C 0 1 N N N N N N -3.254 7.714 10.749 -0.549 0.270 -2.744 "C5'" DA 6
DA "C4'" C4* C 0 1 N N R N N N -1.972 6.935 10.652 -1.239 -0.251 -1.482 "C4'" DA 7
DA "O4'" O4* O 0 1 N N N N N N -2.205 5.629 10.096 -0.267 -0.564 -0.458 "O4'" DA 8
DA "C3'" C3* C 0 1 N N S N N N -0.884 7.550 9.774 -2.105 0.859 -0.835 "C3'" DA 9
DA "O3'" O3* O 0 1 N N N N N N 0.377 7.277 10.436 -3.409 0.895 -1.418 "O3'" DA 10
DA "C2'" C2* C 0 1 N N N N N N -1.011 6.815 8.448 -2.173 0.398 0.640 "C2'" DA 11
DA "C1'" C1* C 0 1 N N R N N N -1.499 5.434 8.851 -0.965 -0.545 0.797 "C1'" DA 12
DA N9 N9 N 0 1 Y N N N N N -2.414 4.796 7.924 -0.078 -0.047 1.852 N9 DA 13
DA C8 C8 C 0 1 Y N N N N N -3.356 5.385 7.125 0.962 0.817 1.689 C8 DA 14
DA N7 N7 N 0 1 Y N N N N N -4.176 4.542 6.586 1.535 1.044 2.835 N7 DA 15
DA C5 C5 C 0 1 Y N N N N N -3.788 3.302 7.070 0.897 0.346 3.805 C5 DA 16
DA C6 C6 C 0 1 Y N N N N N -4.288 1.998 6.885 1.069 0.196 5.191 C6 DA 17
DA N6 N6 N 0 1 N N N N N N -5.369 1.727 6.154 2.079 0.869 5.856 N6 DA 18
DA N1 N1 N 0 1 Y N N N N N -3.627 0.989 7.493 0.236 -0.603 5.850 N1 DA 19
DA C2 C2 C 0 1 Y N N N N N -2.553 1.276 8.249 -0.729 -1.249 5.224 C2 DA 20
DA N3 N3 N 0 1 Y N N N N N -2.016 2.460 8.510 -0.925 -1.144 3.927 N3 DA 21
DA C4 C4 C 0 1 Y N N N N N -2.678 3.447 7.892 -0.142 -0.368 3.184 C4 DA 22
DA HOP3 3HOP H 0 0 N N N N N N -5.120 6.114 8.449 2.241 -0.873 -6.121 HOP3 DA 23
DA HOP2 2HOP H 0 0 N N N N N N -4.930 8.116 7.004 -0.732 -0.447 -5.887 HOP2 DA 24
DA "H5'" 1H5* H 0 1 N N N N N N -3.167 8.611 11.405 -1.302 0.594 -3.463 "H5'" DA 25
DA "H5''" 2H5* H 0 0 N N N N N N -4.041 7.181 11.331 0.092 1.112 -2.486 "H5''" DA 26
DA "H4'" H4* H 0 1 N N N N N N -1.615 6.919 11.708 -1.846 -1.126 -1.712 "H4'" DA 27
DA "H3'" H3* H 0 1 N N N N N N -0.959 8.650 9.610 -1.617 1.830 -0.918 "H3'" DA 28
DA "HO3'" H3T H 0 0 N Y N N N N 1.053 7.659 9.889 -3.924 1.538 -0.913 "HO3'" DA 29
DA "H2'" 1H2* H 0 1 N N N N N N -1.652 7.329 7.695 -3.103 -0.136 0.831 "H2'" DA 30
DA "H2''" 2H2* H 0 0 N N N N N N -0.082 6.814 7.830 -2.079 1.253 1.311 "H2''" DA 31
DA "H1'" H1* H 0 1 N N N N N N -0.610 4.761 8.898 -1.309 -1.549 1.046 "H1'" DA 32
DA H8 H8 H 0 1 N N N N N N -3.448 6.466 6.928 1.266 1.250 0.748 H8 DA 33
DA H61 1H6 H 0 1 N N N N N N -5.731 0.782 6.020 2.185 0.761 6.814 H61 DA 34
DA H62 2H6 H 0 1 N N N N N N -5.218 2.128 5.228 2.683 1.447 5.363 H62 DA 35
DA H2 H2 H 0 1 N N N N N N -2.040 0.420 8.721 -1.383 -1.889 5.798 H2 DA 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P SING N N 1
DA OP3 HOP3 SING N N 2
DA P OP1 DOUB N N 3
DA P OP2 SING N N 4
DA P "O5'" SING N N 5
DA OP2 HOP2 SING N N 6
DA "O5'" "C5'" SING N N 7
DA "C5'" "C4'" SING N N 8
DA "C5'" "H5'" SING N N 9
DA "C5'" "H5''" SING N N 10
DA "C4'" "O4'" SING N N 11
DA "C4'" "C3'" SING N N 12
DA "C4'" "H4'" SING N N 13
DA "O4'" "C1'" SING N N 14
DA "C3'" "O3'" SING N N 15
DA "C3'" "C2'" SING N N 16
DA "C3'" "H3'" SING N N 17
DA "O3'" "HO3'" SING N N 18
DA "C2'" "C1'" SING N N 19
DA "C2'" "H2'" SING N N 20
DA "C2'" "H2''" SING N N 21
DA "C1'" N9 SING N N 22
DA "C1'" "H1'" SING N N 23
DA N9 C8 SING Y N 24
DA N9 C4 SING Y N 25
DA C8 N7 DOUB Y N 26
DA C8 H8 SING N N 27
DA N7 C5 SING Y N 28
DA C5 C6 SING Y N 29
DA C5 C4 DOUB Y N 30
DA C6 N6 SING N N 31
DA C6 N1 DOUB Y N 32
DA N6 H61 SING N N 33
DA N6 H62 SING N N 34
DA N1 C2 SING Y N 35
DA C2 N3 DOUB Y N 36
DA C2 H2 SING N N 37
DA N3 C4 SING Y N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DA SMILES ACDLabs 10.04 'O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O'
DA SMILES_CANONICAL CACTVS 3.341 'Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3'
DA SMILES CACTVS 3.341 'Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3'
DA SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N'
DA SMILES 'OpenEye OEToolkits' 1.5.0 'c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N'
DA InChI InChI 1.03 'InChI=1S/C10H14N5O6P/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(21-7)2-20-22(17,18)19/h3-7,16H,1-2H2,(H2,11,12,13)(H2,17,18,19)/t5-,6+,7+/m0/s1'
DA InChIKey InChI 1.03 KHWCHTKSEGGWEX-RRKCRQDMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DA 'SYSTEMATIC NAME' ACDLabs 10.04
;2'-deoxy-5'-adenylic acid
;
DA 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DA 'Create component' 2001-01-25 RCSB
DA 'Modify descriptor' 2011-06-04 RCSB
DA 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 DA PTR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' "C5'" O1P ? ?
2 DA PTR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' "C5'" O3P ? ?
3 DA PTR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' "O3'" P ? ?
4 DA SER None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' P OG ? ?
5 DA TYR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' P OH ? ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
DA OP3 O 7.110 6.615 1
DA P P 7.571 5.188 2
DA OP1 O 8.998 5.649 3
DA OP2 O 6.144 4.726 4
DA "O5'" O 8.032 3.760 5
DA "C5'" C 7.027 2.647 6
DA "C4'" C 7.487 1.220 7
DA "O4'" O 6.604 0.008 8
DA "C3'" C 8.913 0.754 9
DA "O3'" O 10.129 1.633 10
DA "C2'" C 8.911 -0.746 11
DA "C1'" C 7.483 -1.207 12
DA N9 N 7.018 -2.633 13
DA C8 C 7.893 -3.840 14
DA N7 N 7.018 -5.047 15
DA C5 C 5.598 -4.590 16
DA C6 C 4.299 -5.340 17
DA N6 N 4.299 -6.840 18
DA N1 N 3.000 -4.590 19
DA C2 C 3.000 -3.090 20
DA N3 N 4.299 -2.340 21
DA C4 C 5.598 -3.090 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
DA OP3 P SINGLE NONE 1
DA P OP1 DOUBLE NONE 2
DA P OP2 SINGLE NONE 3
DA P "O5'" SINGLE NONE 4
DA "O5'" "C5'" SINGLE NONE 5
DA "C4'" "C5'" SINGLE BEGINDASH 6
DA "C4'" "O4'" SINGLE NONE 7
DA "C4'" "C3'" SINGLE NONE 8
DA "O4'" "C1'" SINGLE NONE 9
DA "C3'" "O3'" SINGLE BEGINWEDGE 10
DA "C3'" "C2'" SINGLE NONE 11
DA "C2'" "C1'" SINGLE NONE 12
DA "C1'" N9 SINGLE BEGINDASH 13
DA N9 C8 SINGLE NONE 14
DA N9 C4 SINGLE NONE 15
DA C8 N7 DOUBLE NONE 16
DA N7 C5 SINGLE NONE 17
DA C5 C6 DOUBLE NONE 18
DA C5 C4 SINGLE NONE 19
DA C6 N6 SINGLE NONE 20
DA C6 N1 SINGLE NONE 21
DA N1 C2 DOUBLE NONE 22
DA C2 N3 SINGLE NONE 23
DA N3 C4 DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
DA MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
DA adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
DA deoxyribose F2 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
DA imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
DA phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
DA purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
DA pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
DA "C4'" S1 1
DA "O4'" S1 1
DA "C3'" S1 1
DA "C2'" S1 1
DA "C1'" S1 1
DA N9 S1 1
DA C8 S1 1
DA N7 S1 1
DA C5 S1 1
DA C6 S1 1
DA N1 S1 1
DA C2 S1 1
DA N3 S1 1
DA C4 S1 1
DA N1 F1 1
DA C6 F1 1
DA C5 F1 1
DA C4 F1 1
DA N3 F1 1
DA C2 F1 1
DA N9 F1 1
DA C8 F1 1
DA N7 F1 1
DA N6 F1 1
DA "C1'" F2 1
DA "C2'" F2 1
DA "C3'" F2 1
DA "O3'" F2 1
DA "C4'" F2 1
DA "O4'" F2 1
DA "C5'" F2 1
DA "O5'" F2 1
DA C5 F3 1
DA C4 F3 1
DA N9 F3 1
DA C8 F3 1
DA N7 F3 1
DA OP3 F4 1
DA P F4 1
DA OP1 F4 1
DA OP2 F4 1
DA "O5'" F4 1
DA N7 F5 1
DA C8 F5 1
DA N9 F5 1
DA C4 F5 1
DA C5 F5 1
DA C6 F5 1
DA N1 F5 1
DA C2 F5 1
DA N3 F5 1
DA C5 F6 1
DA C6 F6 1
DA N1 F6 1
DA C2 F6 1
DA N3 F6 1
DA C4 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id DA
_pdbe_chem_comp_rdkit_properties.exactmw 331.068
_pdbe_chem_comp_rdkit_properties.amw 331.225
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 143.555
_pdbe_chem_comp_rdkit_properties.tpsa 165.840
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.643
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.235
_pdbe_chem_comp_rdkit_properties.chi0v 11.027
_pdbe_chem_comp_rdkit_properties.chi1v 6.743
_pdbe_chem_comp_rdkit_properties.chi2v 2.603
_pdbe_chem_comp_rdkit_properties.chi3v 2.603
_pdbe_chem_comp_rdkit_properties.chi4v 1.654
_pdbe_chem_comp_rdkit_properties.chi0n 24.133
_pdbe_chem_comp_rdkit_properties.chi1n 11.902
_pdbe_chem_comp_rdkit_properties.chi2n 2.288
_pdbe_chem_comp_rdkit_properties.chi3n 2.288
_pdbe_chem_comp_rdkit_properties.chi4n 1.459
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.620
_pdbe_chem_comp_rdkit_properties.kappa1 5.783
_pdbe_chem_comp_rdkit_properties.kappa2 5.539
_pdbe_chem_comp_rdkit_properties.kappa3 2.950
_pdbe_chem_comp_rdkit_properties.Phi 1.456
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
DA UniChem 'Guide to Pharmacology' 5120
DA UniChem 'KEGG LIGAND' C00360
DA UniChem ChEBI 17713
DA UniChem ZINC ZINC000001713574
DA UniChem eMolecules 713346
DA UniChem fdasrs VFR8I97ORM
DA UniChem HMDB HMDB0000905
DA UniChem 'PubChem TPHARMA' 14753201
DA UniChem NMRShiftDB 60020576
DA UniChem ACTor 25191-20-2
DA UniChem ACTor 29576-96-3
DA UniChem MetaboLights MTBLC17713
DA UniChem BRENDA 101842
DA UniChem BRENDA 105885
DA UniChem BRENDA 12291
DA UniChem BRENDA 135912
DA UniChem BRENDA 145790
DA UniChem BRENDA 1745
DA UniChem BRENDA 29317
DA UniChem BRENDA 4325
DA UniChem BRENDA 7086
DA UniChem BRENDA 716
DA UniChem BRENDA 96008
DA UniChem ChemicalBook CB9692543
DA UniChem MedChemExpress HY-W016009
DA UniChem 'Probes And Drugs' PD018458
DA UniChem Nikkaji J205.943F
DA UniChem SureChEMBL SCHEMBL48174
DA UniChem PubChem 12599
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
DA OP3 2.654 2.316 -0.792 ETKDGv3 1
DA P 3.787 1.568 0.220 ETKDGv3 2
DA OP1 4.968 1.104 -0.603 ETKDGv3 3
DA OP2 4.325 2.686 1.370 ETKDGv3 4
DA "O5'" 3.078 0.242 1.025 ETKDGv3 5
DA "C5'" 2.615 -0.672 0.059 ETKDGv3 6
DA "C4'" 1.870 -1.814 0.765 ETKDGv3 7
DA "O4'" 0.815 -1.284 1.534 ETKDGv3 8
DA "C3'" 1.279 -2.813 -0.228 ETKDGv3 9
DA "O3'" 1.261 -4.115 0.307 ETKDGv3 10
DA "C2'" -0.119 -2.291 -0.442 ETKDGv3 11
DA "C1'" -0.382 -1.432 0.795 ETKDGv3 12
DA N9 -0.903 -0.116 0.417 ETKDGv3 13
DA C8 -0.620 1.145 1.063 ETKDGv3 14
DA N7 -1.495 2.092 0.840 ETKDGv3 15
DA C5 -2.480 1.500 0.005 ETKDGv3 16
DA C6 -3.654 1.975 -0.408 ETKDGv3 17
DA N6 -4.069 3.311 -0.128 ETKDGv3 18
DA N1 -4.518 1.068 -1.132 ETKDGv3 19
DA C2 -4.176 -0.183 -1.337 ETKDGv3 20
DA N3 -2.916 -0.690 -0.837 ETKDGv3 21
DA C4 -2.128 0.150 -0.237 ETKDGv3 22
DA HOP3 1.898 2.547 -0.196 ETKDGv3 23
DA HOP2 3.521 2.902 1.905 ETKDGv3 24
DA "H5'" 1.915 -0.179 -0.654 ETKDGv3 25
DA "H5''" 3.474 -1.104 -0.504 ETKDGv3 26
DA "H4'" 2.587 -2.331 1.441 ETKDGv3 27
DA "H3'" 1.843 -2.835 -1.186 ETKDGv3 28
DA "HO3'" 0.763 -4.092 1.167 ETKDGv3 29
DA "H2'" -0.145 -1.678 -1.370 ETKDGv3 30
DA "H2''" -0.862 -3.114 -0.535 ETKDGv3 31
DA "H1'" -1.128 -1.939 1.446 ETKDGv3 32
DA H8 0.242 1.301 1.698 ETKDGv3 33
DA H61 -5.002 3.646 -0.456 ETKDGv3 34
DA H62 -3.454 3.970 0.400 ETKDGv3 35
DA H2 -4.844 -0.842 -1.874 ETKDGv3 36
#