data_D7J
#
_chem_comp.id D7J
_chem_comp.name
"tert-butyl [(2S)-1-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H38 N4 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-23
_chem_comp.pdbx_modified_date 2017-12-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 486.670
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code D7J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BD7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D7J C01 C1 C 0 1 N N N N N N -14.272 -33.772 -6.396 -2.662 4.883 0.172 C01 D7J 1
D7J C02 C2 C 0 1 N N N N N N -15.736 -33.825 -6.350 -2.606 3.482 -0.441 C02 D7J 2
D7J C03 C3 C 0 1 N N N N N N -16.141 -34.555 -5.179 -1.620 3.476 -1.610 C03 D7J 3
D7J C05 C4 C 0 1 N N R N N N -17.461 -34.028 -7.931 -2.685 1.176 0.292 C05 D7J 4
D7J C06 C5 C 0 1 N N N N N N -18.634 -34.955 -7.721 -1.780 0.129 0.945 C06 D7J 5
D7J C08 C6 C 0 1 N N N N N N -19.646 -34.623 -10.482 0.774 -1.106 1.065 C08 D7J 6
D7J C09 C7 C 0 1 N N S N N N -18.535 -33.733 -11.031 2.202 -1.188 0.522 C09 D7J 7
D7J C10 C8 C 0 1 N N N N N N -19.136 -32.355 -11.527 2.934 -2.356 1.186 C10 D7J 8
D7J C11 C9 C 0 1 Y N N N N N -18.240 -31.422 -12.250 4.297 -2.514 0.563 C11 D7J 9
D7J C12 C10 C 0 1 Y N N N N N -18.767 -30.302 -12.896 5.380 -1.837 1.092 C12 D7J 10
D7J C13 C11 C 0 1 Y N N N N N -17.976 -29.408 -13.580 6.631 -1.980 0.521 C13 D7J 11
D7J C14 C12 C 0 1 Y N N N N N -16.605 -29.604 -13.663 6.798 -2.802 -0.579 C14 D7J 12
D7J C15 C13 C 0 1 Y N N N N N -16.045 -30.711 -13.037 5.715 -3.479 -1.107 C15 D7J 13
D7J C16 C14 C 0 1 Y N N N N N -16.852 -31.603 -12.333 4.466 -3.340 -0.532 C16 D7J 14
D7J C18 C15 C 0 1 N N N N N N -17.733 -35.413 -13.047 3.947 0.444 0.047 C18 D7J 15
D7J C21 C16 C 0 1 N N N N N N -16.254 -37.399 -13.530 5.706 1.942 -0.552 C21 D7J 16
D7J C22 C17 C 0 1 N N N N N N -15.858 -38.719 -12.785 5.203 2.083 -1.990 C22 D7J 17
D7J C23 C18 C 0 1 N N N N N N -14.982 -36.548 -13.623 6.770 0.844 -0.488 C23 D7J 18
D7J C24 C19 C 0 1 N N N N N N -16.784 -37.777 -14.929 6.315 3.268 -0.092 C24 D7J 19
D7J C25 C20 C 0 1 N N N N N N -17.917 -32.644 -7.265 -4.081 1.049 0.847 C25 D7J 20
D7J C28 C21 C 0 1 N N N N N N -18.060 -30.185 -7.343 -6.306 0.056 0.835 C28 D7J 21
D7J C29 C22 C 0 1 Y N N N N N -18.725 -29.467 -8.475 -7.069 -0.976 0.045 C29 D7J 22
D7J C30 C23 C 0 1 Y N N N N N -18.003 -28.908 -9.471 -7.049 -2.308 0.428 C30 D7J 23
D7J C31 C24 C 0 1 Y N N N N N -18.549 -28.268 -10.524 -7.765 -3.223 -0.329 C31 D7J 24
D7J C32 C25 C 0 1 Y N N N N N -19.979 -28.205 -10.620 -8.471 -2.780 -1.431 C32 D7J 25
D7J C34 C26 C 0 1 Y N N N N N -20.074 -29.363 -8.639 -7.802 -0.606 -1.066 C34 D7J 26
D7J N04 N1 N 0 1 N N N N N N -16.223 -34.569 -7.414 -2.165 2.519 0.577 N04 D7J 27
D7J N17 N2 N 0 1 N N N N N N -17.520 -34.502 -11.947 2.908 0.061 0.816 N17 D7J 28
D7J N27 N3 N 0 1 N N N N N N -17.605 -31.448 -7.866 -4.949 0.179 0.295 N27 D7J 29
D7J N33 N4 N 0 1 Y N N N N N -20.714 -28.703 -9.678 -8.467 -1.504 -1.766 N33 D7J 30
D7J O19 O1 O 0 1 N N N N N N -17.692 -35.008 -14.182 4.298 -0.247 -0.889 O19 D7J 31
D7J O20 O2 O 0 1 N N N N N N -17.346 -36.752 -12.774 4.597 1.592 0.317 O20 D7J 32
D7J O26 O3 O 0 1 N N N N N N -18.576 -32.651 -6.257 -4.422 1.730 1.791 O26 D7J 33
D7J S07 S1 S 0 1 N N N N N N -19.996 -34.223 -8.732 -0.139 0.183 0.173 S07 D7J 34
D7J H1 H1 H 0 1 N N N N N N -13.899 -33.180 -5.547 -2.990 5.597 -0.584 H1 D7J 35
D7J H2 H2 H 0 1 N N N N N N -13.866 -34.793 -6.337 -3.365 4.887 1.005 H2 D7J 36
D7J H3 H3 H 0 1 N N N N N N -13.952 -33.304 -7.339 -1.671 5.162 0.530 H3 D7J 37
D7J H4 H4 H 0 1 N N N N N N -16.156 -32.808 -6.341 -3.597 3.203 -0.800 H4 D7J 38
D7J H5 H5 H 0 1 N N N N N N -15.791 -34.028 -4.279 -1.529 2.463 -2.004 H5 D7J 39
D7J H6 H6 H 0 1 N N N N N N -17.238 -34.632 -5.156 -1.982 4.139 -2.395 H6 D7J 40
D7J H7 H7 H 0 1 N N N N N N -15.704 -35.564 -5.206 -0.645 3.820 -1.265 H7 D7J 41
D7J H8 H8 H 0 1 N N N N N N -17.352 -33.849 -9.011 -2.707 1.015 -0.786 H8 D7J 42
D7J H9 H9 H 0 1 N N N N N N -18.915 -34.990 -6.658 -1.688 0.342 2.010 H9 D7J 43
D7J H10 H10 H 0 1 N N N N N N -18.394 -35.970 -8.070 -2.213 -0.862 0.808 H10 D7J 44
D7J H11 H11 H 0 1 N N N N N N -20.559 -34.468 -11.076 0.276 -2.066 0.925 H11 D7J 45
D7J H12 H12 H 0 1 N N N N N N -19.334 -35.675 -10.556 0.802 -0.863 2.127 H12 D7J 46
D7J H13 H13 H 0 1 N N N N N N -17.941 -33.459 -10.147 2.172 -1.344 -0.557 H13 D7J 47
D7J H14 H14 H 0 1 N N N N N N -19.512 -31.825 -10.640 3.042 -2.158 2.252 H14 D7J 48
D7J H15 H15 H 0 1 N N N N N N -19.976 -32.588 -12.199 2.361 -3.273 1.042 H15 D7J 49
D7J H16 H16 H 0 1 N N N N N N -19.833 -30.132 -12.857 5.249 -1.195 1.951 H16 D7J 50
D7J H17 H17 H 0 1 N N N N N N -18.425 -28.548 -14.055 7.477 -1.451 0.933 H17 D7J 51
D7J H18 H18 H 0 1 N N N N N N -15.983 -28.907 -14.205 7.775 -2.914 -1.025 H18 D7J 52
D7J H19 H19 H 0 1 N N N N N N -14.980 -30.881 -13.096 5.846 -4.120 -1.966 H19 D7J 53
D7J H20 H20 H 0 1 N N N N N N -16.399 -32.451 -11.841 3.620 -3.869 -0.945 H20 D7J 54
D7J H21 H21 H 0 1 N N N N N N -15.476 -38.475 -11.783 4.446 2.865 -2.035 H21 D7J 55
D7J H22 H22 H 0 1 N N N N N N -16.742 -39.367 -12.693 6.036 2.345 -2.642 H22 D7J 56
D7J H23 H23 H 0 1 N N N N N N -15.078 -39.243 -13.357 4.769 1.138 -2.317 H23 D7J 57
D7J H24 H24 H 0 1 N N N N N N -14.633 -36.298 -12.610 7.602 1.106 -1.140 H24 D7J 58
D7J H25 H25 H 0 1 N N N N N N -14.200 -37.114 -14.151 7.128 0.744 0.536 H25 D7J 59
D7J H26 H26 H 0 1 N N N N N N -15.200 -35.622 -14.175 6.336 -0.101 -0.815 H26 D7J 60
D7J H27 H27 H 0 1 N N N N N N -17.694 -38.385 -14.825 5.558 4.051 -0.137 H27 D7J 61
D7J H28 H28 H 0 1 N N N N N N -17.018 -36.861 -15.492 6.674 3.168 0.932 H28 D7J 62
D7J H29 H29 H 0 1 N N N N N N -16.018 -38.353 -15.468 7.148 3.531 -0.744 H29 D7J 63
D7J H30 H30 H 0 1 N N N N N N -17.207 -29.599 -6.971 -6.814 1.018 0.762 H30 D7J 64
D7J H31 H31 H 0 1 N N N N N N -18.777 -30.349 -6.525 -6.255 -0.250 1.879 H31 D7J 65
D7J H32 H32 H 0 1 N N N N N N -16.926 -28.978 -9.420 -6.488 -2.626 1.294 H32 D7J 66
D7J H33 H33 H 0 1 N N N N N N -17.924 -27.813 -11.278 -7.772 -4.269 -0.060 H33 D7J 67
D7J H34 H34 H 0 1 N N N N N N -20.442 -27.742 -11.479 -9.032 -3.486 -2.025 H34 D7J 68
D7J H35 H35 H 0 1 N N N N N N -20.699 -29.835 -7.896 -7.827 0.431 -1.369 H35 D7J 69
D7J H36 H36 H 0 1 N N N N N N -16.384 -35.507 -7.106 -2.433 2.822 1.502 H36 D7J 70
D7J H38 H38 H 0 1 N N N N N N -16.558 -34.332 -11.732 2.628 0.612 1.563 H38 D7J 71
D7J H39 H39 H 0 1 N N N N N N -17.044 -31.455 -8.694 -4.676 -0.366 -0.460 H39 D7J 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D7J C24 C21 SING N N 1
D7J O19 C18 DOUB N N 2
D7J C14 C13 DOUB Y N 3
D7J C14 C15 SING Y N 4
D7J C23 C21 SING N N 5
D7J C13 C12 SING Y N 6
D7J C21 C22 SING N N 7
D7J C21 O20 SING N N 8
D7J C18 O20 SING N N 9
D7J C18 N17 SING N N 10
D7J C15 C16 DOUB Y N 11
D7J C12 C11 DOUB Y N 12
D7J C16 C11 SING Y N 13
D7J C11 C10 SING N N 14
D7J N17 C09 SING N N 15
D7J C10 C09 SING N N 16
D7J C09 C08 SING N N 17
D7J C32 C31 DOUB Y N 18
D7J C32 N33 SING Y N 19
D7J C31 C30 SING Y N 20
D7J C08 S07 SING N N 21
D7J N33 C34 DOUB Y N 22
D7J C30 C29 DOUB Y N 23
D7J S07 C06 SING N N 24
D7J C34 C29 SING Y N 25
D7J C29 C28 SING N N 26
D7J C05 C06 SING N N 27
D7J C05 N04 SING N N 28
D7J C05 C25 SING N N 29
D7J N27 C28 SING N N 30
D7J N27 C25 SING N N 31
D7J N04 C02 SING N N 32
D7J C25 O26 DOUB N N 33
D7J C01 C02 SING N N 34
D7J C02 C03 SING N N 35
D7J C01 H1 SING N N 36
D7J C01 H2 SING N N 37
D7J C01 H3 SING N N 38
D7J C02 H4 SING N N 39
D7J C03 H5 SING N N 40
D7J C03 H6 SING N N 41
D7J C03 H7 SING N N 42
D7J C05 H8 SING N N 43
D7J C06 H9 SING N N 44
D7J C06 H10 SING N N 45
D7J C08 H11 SING N N 46
D7J C08 H12 SING N N 47
D7J C09 H13 SING N N 48
D7J C10 H14 SING N N 49
D7J C10 H15 SING N N 50
D7J C12 H16 SING N N 51
D7J C13 H17 SING N N 52
D7J C14 H18 SING N N 53
D7J C15 H19 SING N N 54
D7J C16 H20 SING N N 55
D7J C22 H21 SING N N 56
D7J C22 H22 SING N N 57
D7J C22 H23 SING N N 58
D7J C23 H24 SING N N 59
D7J C23 H25 SING N N 60
D7J C23 H26 SING N N 61
D7J C24 H27 SING N N 62
D7J C24 H28 SING N N 63
D7J C24 H29 SING N N 64
D7J C28 H30 SING N N 65
D7J C28 H31 SING N N 66
D7J C30 H32 SING N N 67
D7J C31 H33 SING N N 68
D7J C32 H34 SING N N 69
D7J C34 H35 SING N N 70
D7J N04 H36 SING N N 71
D7J N17 H38 SING N N 72
D7J N27 H39 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D7J SMILES ACDLabs 12.01 CC(C)NC(CSCC(Cc1ccccc1)NC(OC(C)(C)C)=O)C(=O)NCc2cccnc2
D7J InChI InChI 1.03 InChI=1S/C26H38N4O3S/c1-19(2)29-23(24(31)28-16-21-12-9-13-27-15-21)18-34-17-22(14-20-10-7-6-8-11-20)30-25(32)33-26(3,4)5/h6-13,15,19,22-23,29H,14,16-18H2,1-5H3,(H,28,31)(H,30,32)/t22-,23-/m0/s1
D7J InChIKey InChI 1.03 YPADWMLSYMTMAN-GOTSBHOMSA-N
D7J SMILES_CANONICAL CACTVS 3.385 CC(C)N[C@@H](CSC[C@H](Cc1ccccc1)NC(=O)OC(C)(C)C)C(=O)NCc2cccnc2
D7J SMILES CACTVS 3.385 CC(C)N[CH](CSC[CH](Cc1ccccc1)NC(=O)OC(C)(C)C)C(=O)NCc2cccnc2
D7J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)N[C@@H](CSC[C@H](Cc1ccccc1)NC(=O)OC(C)(C)C)C(=O)NCc2cccnc2
D7J SMILES "OpenEye OEToolkits" 2.0.6 CC(C)NC(CSCC(Cc1ccccc1)NC(=O)OC(C)(C)C)C(=O)NCc2cccnc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D7J "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate"
D7J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{R})-3-oxidanylidene-2-(propan-2-ylamino)-3-(pyridin-3-ylmethylamino)propyl]sulfanyl-3-phenyl-propan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D7J 'Create component' 2017-10-23 RCSB
D7J 'Initial release' 2017-12-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
D7J C01 C 12.093 4.601 1
D7J C02 C 12.093 3.100 2
D7J C03 C 13.392 2.350 3
D7J C05 C 10.794 0.851 4
D7J C06 C 9.495 0.101 5
D7J C08 C 6.897 0.101 6
D7J C09 C 5.598 0.851 7
D7J C10 C 4.299 0.101 8
D7J C11 C 4.299 -1.399 9
D7J C12 C 5.598 -2.150 10
D7J C13 C 5.598 -3.650 11
D7J C14 C 4.299 -4.399 12
D7J C15 C 3.000 -3.650 13
D7J C16 C 3.000 -2.150 14
D7J C18 C 6.897 3.100 15
D7J C21 C 8.196 5.351 16
D7J C22 C 8.946 4.051 17
D7J C23 C 7.446 6.649 18
D7J C24 C 9.495 6.101 19
D7J C25 C 12.093 0.101 20
D7J C28 C 13.392 -2.150 21
D7J C29 C 13.392 -3.650 22
D7J C30 C 12.093 -4.399 23
D7J C31 C 12.093 -5.899 24
D7J C32 C 13.392 -6.649 25
D7J C34 C 14.691 -4.399 26
D7J N04 N 10.794 2.350 27
D7J N17 N 5.598 2.350 28
D7J N27 N 12.093 -1.399 29
D7J N33 N 14.691 -5.899 30
D7J O19 O 8.196 2.350 31
D7J O20 O 6.897 4.601 32
D7J O26 O 13.392 0.851 33
D7J S07 S 8.196 0.851 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
D7J C24 C21 SINGLE NONE 1
D7J O19 C18 DOUBLE NONE 2
D7J C14 C13 SINGLE NONE 3
D7J C14 C15 DOUBLE NONE 4
D7J C23 C21 SINGLE NONE 5
D7J C13 C12 DOUBLE NONE 6
D7J C21 C22 SINGLE NONE 7
D7J C21 O20 SINGLE NONE 8
D7J C18 O20 SINGLE NONE 9
D7J C18 N17 SINGLE NONE 10
D7J C15 C16 SINGLE NONE 11
D7J C12 C11 SINGLE NONE 12
D7J C16 C11 DOUBLE NONE 13
D7J C11 C10 SINGLE NONE 14
D7J N17 C09 SINGLE NONE 15
D7J C09 C10 SINGLE BEGINDASH 16
D7J C09 C08 SINGLE NONE 17
D7J C32 C31 SINGLE NONE 18
D7J C32 N33 DOUBLE NONE 19
D7J C31 C30 DOUBLE NONE 20
D7J C08 S07 SINGLE NONE 21
D7J N33 C34 SINGLE NONE 22
D7J C30 C29 SINGLE NONE 23
D7J S07 C06 SINGLE NONE 24
D7J C34 C29 DOUBLE NONE 25
D7J C29 C28 SINGLE NONE 26
D7J C05 C06 SINGLE BEGINDASH 27
D7J C05 N04 SINGLE NONE 28
D7J C05 C25 SINGLE NONE 29
D7J N27 C28 SINGLE NONE 30
D7J N27 C25 SINGLE NONE 31
D7J N04 C02 SINGLE NONE 32
D7J C25 O26 DOUBLE NONE 33
D7J C01 C02 SINGLE NONE 34
D7J C02 C03 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
D7J MurckoScaffold S1 scaffold O=C(CCSCCCc1ccccc1)NCc1cccnc1 InChI=1S/C18H22N2OS/c21-18(20-15-17-8-4-11-19-14-17)10-13-22-12-5-9-16-6-2-1-3-7-16/h1-4,6-8,11,14H,5,9-10,12-13,15H2,(H,20,21) AOKIWBMRFMZHAU-UHFFFAOYSA-N
D7J amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
D7J peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
D7J phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
D7J pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
D7J C05 S1 1
D7J C06 S1 1
D7J C08 S1 1
D7J C09 S1 1
D7J C10 S1 1
D7J C11 S1 1
D7J C12 S1 1
D7J C13 S1 1
D7J C14 S1 1
D7J C15 S1 1
D7J C16 S1 1
D7J C25 S1 1
D7J C28 S1 1
D7J C29 S1 1
D7J C30 S1 1
D7J C31 S1 1
D7J C32 S1 1
D7J C34 S1 1
D7J N27 S1 1
D7J N33 S1 1
D7J O26 S1 1
D7J S07 S1 1
D7J N27 F1 1
D7J C25 F1 1
D7J O26 F1 1
D7J C05 F1 1
D7J O26 F2 1
D7J C25 F2 1
D7J C05 F2 1
D7J N04 F2 1
D7J C11 F3 1
D7J C12 F3 1
D7J C13 F3 1
D7J C14 F3 1
D7J C15 F3 1
D7J C16 F3 1
D7J C32 F4 1
D7J C31 F4 1
D7J C30 F4 1
D7J C29 F4 1
D7J C34 F4 1
D7J N33 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id D7J
_pdbe_chem_comp_rdkit_properties.exactmw 486.266
_pdbe_chem_comp_rdkit_properties.amw 486.682
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.955
_pdbe_chem_comp_rdkit_properties.tpsa 92.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.824
_pdbe_chem_comp_rdkit_properties.CrippenMR 138.240
_pdbe_chem_comp_rdkit_properties.chi0v 17.238
_pdbe_chem_comp_rdkit_properties.chi1v 9.080
_pdbe_chem_comp_rdkit_properties.chi2v 3.236
_pdbe_chem_comp_rdkit_properties.chi3v 3.236
_pdbe_chem_comp_rdkit_properties.chi4v 2.017
_pdbe_chem_comp_rdkit_properties.chi0n 54.422
_pdbe_chem_comp_rdkit_properties.chi1n 27.105
_pdbe_chem_comp_rdkit_properties.chi2n 2.645
_pdbe_chem_comp_rdkit_properties.chi3n 2.645
_pdbe_chem_comp_rdkit_properties.chi4n 1.543
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.580
_pdbe_chem_comp_rdkit_properties.kappa1 5.863
_pdbe_chem_comp_rdkit_properties.kappa2 13.966
_pdbe_chem_comp_rdkit_properties.kappa3 11.519
_pdbe_chem_comp_rdkit_properties.Phi 2.408
#
_pdbe_chem_comp_external_mappings.comp_id D7J
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 131842077
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
D7J C01 3.357 -2.636 -4.642 ETKDGv3 1
D7J C02 3.000 -3.046 -3.209 ETKDGv3 2
D7J C03 3.461 -4.487 -2.952 ETKDGv3 3
D7J C05 2.786 -0.949 -1.940 ETKDGv3 4
D7J C06 1.791 -1.273 -0.806 ETKDGv3 5
D7J C08 -0.390 -0.749 0.717 ETKDGv3 6
D7J C09 -1.916 -0.542 0.657 ETKDGv3 7
D7J C10 -2.570 -1.156 -0.601 ETKDGv3 8
D7J C11 -2.270 -2.627 -0.749 ETKDGv3 9
D7J C12 -2.905 -3.607 0.168 ETKDGv3 10
D7J C13 -2.607 -4.909 0.074 ETKDGv3 11
D7J C14 -1.644 -5.377 -0.943 ETKDGv3 12
D7J C15 -1.070 -4.501 -1.776 ETKDGv3 13
D7J C16 -1.397 -3.063 -1.677 ETKDGv3 14
D7J C18 -2.576 1.555 1.948 ETKDGv3 15
D7J C21 -3.384 3.714 3.001 ETKDGv3 16
D7J C22 -4.656 3.117 3.635 ETKDGv3 17
D7J C23 -3.716 5.106 2.442 ETKDGv3 18
D7J C24 -2.269 3.855 4.054 ETKDGv3 19
D7J C25 3.653 0.213 -1.532 ETKDGv3 20
D7J C28 3.626 2.683 -1.001 ETKDGv3 21
D7J C29 2.749 2.701 0.221 ETKDGv3 22
D7J C30 1.409 3.332 0.161 ETKDGv3 23
D7J C31 0.590 3.259 1.215 ETKDGv3 24
D7J C32 1.032 2.543 2.426 ETKDGv3 25
D7J C34 3.109 2.054 1.342 ETKDGv3 26
D7J N04 3.639 -2.113 -2.256 ETKDGv3 27
D7J N17 -2.231 0.889 0.728 ETKDGv3 28
D7J N27 3.256 1.554 -1.849 ETKDGv3 29
D7J N33 2.210 1.991 2.463 ETKDGv3 30
D7J O19 -2.551 0.928 3.041 ETKDGv3 31
D7J O20 -2.943 2.908 1.898 ETKDGv3 32
D7J O26 4.686 0.009 -0.837 ETKDGv3 33
D7J S07 0.459 -0.024 -0.736 ETKDGv3 34
D7J H1 2.989 -1.611 -4.856 ETKDGv3 35
D7J H2 4.458 -2.655 -4.787 ETKDGv3 36
D7J H3 2.884 -3.329 -5.370 ETKDGv3 37
D7J H4 1.891 -3.032 -3.108 ETKDGv3 38
D7J H5 4.567 -4.563 -3.028 ETKDGv3 39
D7J H6 3.147 -4.811 -1.937 ETKDGv3 40
D7J H7 2.999 -5.178 -3.690 ETKDGv3 41
D7J H8 2.212 -0.646 -2.845 ETKDGv3 42
D7J H9 2.319 -1.313 0.172 ETKDGv3 43
D7J H10 1.330 -2.266 -0.985 ETKDGv3 44
D7J H11 -0.178 -1.835 0.805 ETKDGv3 45
D7J H12 0.012 -0.265 1.632 ETKDGv3 46
D7J H13 -2.356 -1.058 1.539 ETKDGv3 47
D7J H14 -3.672 -1.030 -0.525 ETKDGv3 48
D7J H15 -2.254 -0.598 -1.510 ETKDGv3 49
D7J H16 -3.609 -3.270 0.918 ETKDGv3 50
D7J H17 -3.070 -5.621 0.745 ETKDGv3 51
D7J H18 -1.404 -6.430 -1.013 ETKDGv3 52
D7J H19 -0.361 -4.841 -2.519 ETKDGv3 53
D7J H20 -0.912 -2.370 -2.353 ETKDGv3 54
D7J H21 -5.426 2.940 2.854 ETKDGv3 55
D7J H22 -5.075 3.809 4.397 ETKDGv3 56
D7J H23 -4.442 2.152 4.139 ETKDGv3 57
D7J H24 -2.818 5.552 1.962 ETKDGv3 58
D7J H25 -4.515 5.032 1.674 ETKDGv3 59
D7J H26 -4.061 5.788 3.249 ETKDGv3 60
D7J H27 -1.349 4.265 3.586 ETKDGv3 61
D7J H28 -2.023 2.879 4.518 ETKDGv3 62
D7J H29 -2.586 4.545 4.866 ETKDGv3 63
D7J H30 3.489 3.628 -1.569 ETKDGv3 64
D7J H31 4.701 2.624 -0.723 ETKDGv3 65
D7J H32 1.087 3.844 -0.737 ETKDGv3 66
D7J H33 -0.390 3.716 1.178 ETKDGv3 67
D7J H34 0.378 2.469 3.283 ETKDGv3 68
D7J H35 4.067 1.554 1.409 ETKDGv3 69
D7J H36 3.891 -2.603 -1.364 ETKDGv3 70
D7J H38 -2.136 1.472 -0.135 ETKDGv3 71
D7J H39 2.502 1.704 -2.557 ETKDGv3 72
#