data_CYH
#
_chem_comp.id CYH
_chem_comp.name CYCLOHEXANONE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H10 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 98.143
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CYH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1B2L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CYH C1 C1 C 0 1 N N N N N N -4.421 51.685 43.147 -0.000 -0.106 -1.038 C1 CYH 1
CYH O1 O1 O 0 1 N N N N N N -4.168 50.757 42.172 -0.001 0.320 -2.167 O1 CYH 2
CYH C2 C2 C 0 1 N N N N N N -3.205 52.115 43.984 1.299 -0.378 -0.313 C2 CYH 3
CYH C3 C3 C 0 1 N N N N N N -3.516 53.417 44.753 1.251 0.319 1.050 C3 CYH 4
CYH C4 C4 C 0 1 N N N N N N -4.891 53.356 45.424 0.001 -0.129 1.807 C4 CYH 5
CYH C5 C5 C 0 1 N N N N N N -6.000 53.105 44.402 -1.251 0.316 1.051 C5 CYH 6
CYH C6 C6 C 0 1 N N N N N N -5.815 51.688 43.814 -1.298 -0.376 -0.309 C6 CYH 7
CYH H21 1H2 H 0 1 N N N N N N -2.285 52.210 43.362 1.420 -1.452 -0.170 H21 CYH 8
CYH H22 2H2 H 0 1 N N N N N N -2.861 51.302 44.665 2.132 0.013 -0.896 H22 CYH 9
CYH H31 1H3 H 0 1 N N N N N N -3.422 54.312 44.095 2.139 0.055 1.624 H31 CYH 10
CYH H32 2H3 H 0 1 N N N N N N -2.713 53.659 45.488 1.220 1.399 0.904 H32 CYH 11
CYH H41 1H4 H 0 1 N N N N N N -5.092 54.271 46.028 0.002 -1.215 1.897 H41 CYH 12
CYH H42 2H4 H 0 1 N N N N N N -4.912 52.601 46.244 0.001 0.315 2.802 H42 CYH 13
CYH H51 1H5 H 0 1 N N N N N N -6.042 53.893 43.614 -2.137 0.049 1.626 H51 CYH 14
CYH H52 2H5 H 0 1 N N N N N N -7.018 53.261 44.829 -1.223 1.396 0.905 H52 CYH 15
CYH H61 1H6 H 0 1 N N N N N N -5.952 50.874 44.563 -2.134 0.014 -0.890 H61 CYH 16
CYH H62 2H6 H 0 1 N N N N N N -6.638 51.380 43.128 -1.416 -1.450 -0.170 H62 CYH 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CYH C1 O1 DOUB N N 1
CYH C1 C2 SING N N 2
CYH C1 C6 SING N N 3
CYH C2 C3 SING N N 4
CYH C2 H21 SING N N 5
CYH C2 H22 SING N N 6
CYH C3 C4 SING N N 7
CYH C3 H31 SING N N 8
CYH C3 H32 SING N N 9
CYH C4 C5 SING N N 10
CYH C4 H41 SING N N 11
CYH C4 H42 SING N N 12
CYH C5 C6 SING N N 13
CYH C5 H51 SING N N 14
CYH C5 H52 SING N N 15
CYH C6 H61 SING N N 16
CYH C6 H62 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CYH SMILES ACDLabs 10.04 O=C1CCCCC1
CYH SMILES_CANONICAL CACTVS 3.341 O=C1CCCCC1
CYH SMILES CACTVS 3.341 O=C1CCCCC1
CYH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1CCC(=O)CC1
CYH SMILES "OpenEye OEToolkits" 1.5.0 C1CCC(=O)CC1
CYH InChI InChI 1.03 InChI=1S/C6H10O/c7-6-4-2-1-3-5-6/h1-5H2
CYH InChIKey InChI 1.03 JHIVVAPYMSGYDF-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CYH "SYSTEMATIC NAME" ACDLabs 10.04 cyclohexanone
CYH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 cyclohexanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CYH 'Create component' 1999-07-08 RCSB
CYH 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CYH
_pdbe_chem_comp_drugbank_details.drugbank_id DB02060
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cyclohexanone
_pdbe_chem_comp_drugbank_details.description
'Cyclohexanone (also known as oxocyclohexane, pimelic ketone, ketohexamethylene, cyclohexyl ketone or ketocyclohexane) is a six-carbon cyclic molecule with a ketone functional group. It is a colorless, oily liquid with an acetone-like smell.'
_pdbe_chem_comp_drugbank_details.cas_number 108-94-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CYH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02060
_pdbe_chem_comp_drugbank_classification.parent 'Cyclic ketones'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as cyclic ketones. These are organic compounds containing a ketone that is conjugated to a cyclic moiety.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CYH
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02060
_pdbe_chem_comp_drugbank_targets.name 'Pentaerythritol tetranitrate reductase'
_pdbe_chem_comp_drugbank_targets.organism 'Enterobacter cloacae'
_pdbe_chem_comp_drugbank_targets.uniprot_id P71278
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CYH C1 C 4.299 0.750 1
CYH O1 O 4.299 2.250 2
CYH C2 C 3.000 0.000 3
CYH C3 C 3.000 -1.500 4
CYH C4 C 4.299 -2.250 5
CYH C5 C 5.598 -1.500 6
CYH C6 C 5.598 0.000 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CYH C1 O1 DOUBLE NONE 1
CYH C1 C2 SINGLE NONE 2
CYH C1 C6 SINGLE NONE 3
CYH C2 C3 SINGLE NONE 4
CYH C3 C4 SINGLE NONE 5
CYH C4 C5 SINGLE NONE 6
CYH C5 C6 SINGLE NONE 7
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CYH MurckoScaffold S1 scaffold O=C1CCCCC1 InChI=1S/C6H10O/c7-6-4-2-1-3-5-6/h1-5H2 JHIVVAPYMSGYDF-UHFFFAOYSA-N
CYH cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CYH C1 S1 1
CYH O1 S1 1
CYH C2 S1 1
CYH C3 S1 1
CYH C4 S1 1
CYH C5 S1 1
CYH C6 S1 1
CYH C1 F1 1
CYH C2 F1 1
CYH C3 F1 1
CYH C4 F1 1
CYH C5 F1 1
CYH C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CYH
_pdbe_chem_comp_rdkit_properties.exactmw 98.073
_pdbe_chem_comp_rdkit_properties.amw 98.145
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 57.769
_pdbe_chem_comp_rdkit_properties.tpsa 17.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.520
_pdbe_chem_comp_rdkit_properties.CrippenMR 28.092
_pdbe_chem_comp_rdkit_properties.chi0v 3.408
_pdbe_chem_comp_rdkit_properties.chi1v 1.704
_pdbe_chem_comp_rdkit_properties.chi2v 0.477
_pdbe_chem_comp_rdkit_properties.chi3v 0.477
_pdbe_chem_comp_rdkit_properties.chi4v 0.239
_pdbe_chem_comp_rdkit_properties.chi0n 13.408
_pdbe_chem_comp_rdkit_properties.chi1n 6.704
_pdbe_chem_comp_rdkit_properties.chi2n 0.477
_pdbe_chem_comp_rdkit_properties.chi3n 0.477
_pdbe_chem_comp_rdkit_properties.chi4n 0.239
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.330
_pdbe_chem_comp_rdkit_properties.kappa1 0.772
_pdbe_chem_comp_rdkit_properties.kappa2 2.102
_pdbe_chem_comp_rdkit_properties.kappa3 1.298
_pdbe_chem_comp_rdkit_properties.Phi 0.232
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CYH UniChem DrugBank DB02060
CYH UniChem 'KEGG LIGAND' C00414
CYH UniChem ChEBI 17854
CYH UniChem ZINC ZINC000004528575
CYH UniChem eMolecules 475121
CYH UniChem fdasrs 5QOR3YM052
CYH UniChem HMDB HMDB0003315
CYH UniChem NMRShiftDB 10005716
CYH UniChem ACTor 108-94-1
CYH UniChem ACTor 11119-77-0
CYH UniChem BindingDb 6
CYH UniChem 'EPA CompTox Dashboard' DTXSID6020359
CYH UniChem MetaboLights MTBLC17854
CYH UniChem BRENDA 1299
CYH UniChem BRENDA 69643
CYH UniChem Rhea 17854
CYH UniChem ChemicalBook CB8347660
CYH UniChem rxnorm CYCLOHEXANONE
CYH UniChem 'Probes And Drugs' PD008182
CYH UniChem CCDC ZZZWGK
CYH UniChem Nikkaji J2.872J
CYH UniChem SureChEMBL SCHEMBL21294083
CYH UniChem SureChEMBL SCHEMBL3299
CYH UniChem 'PubChem TPHARMA' 15146369
CYH UniChem PubChem 7967
CYH UniChem Mcule MCULE-5664385838
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CYH C1 1.311 0.740 0.088 ETKDGv3 1
CYH O1 2.332 1.345 -0.201 ETKDGv3 2
CYH C2 1.329 -0.758 0.224 ETKDGv3 3
CYH C3 0.094 -1.370 -0.450 ETKDGv3 4
CYH C4 -1.198 -0.684 0.019 ETKDGv3 5
CYH C5 -1.156 0.824 -0.272 ETKDGv3 6
CYH C6 0.047 1.491 0.406 ETKDGv3 7
CYH H21 2.247 -1.178 -0.241 ETKDGv3 8
CYH H22 1.333 -1.021 1.303 ETKDGv3 9
CYH H31 0.044 -2.453 -0.209 ETKDGv3 10
CYH H32 0.187 -1.270 -1.554 ETKDGv3 11
CYH H41 -2.064 -1.134 -0.513 ETKDGv3 12
CYH H42 -1.339 -0.853 1.109 ETKDGv3 13
CYH H51 -1.100 0.987 -1.371 ETKDGv3 14
CYH H52 -2.092 1.296 0.095 ETKDGv3 15
CYH H61 -0.101 1.495 1.507 ETKDGv3 16
CYH H62 0.127 2.545 0.061 ETKDGv3 17
#