data_CXF
#
_chem_comp.id CXF
_chem_comp.name CYCLOHEXYLFORMAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H13 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 127.184
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CXF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1E3I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CXF C1 C1 C 0 1 N N N N N N 72.437 32.497 57.528 -0.241 0.048 -0.248 C1 CXF 1
CXF C2 C2 C 0 1 N N N N N N 73.190 33.567 56.639 -1.376 -0.080 0.770 C2 CXF 2
CXF C3 C3 C 0 1 N N N N N N 74.040 32.825 55.548 -0.967 0.600 2.077 C3 CXF 3
CXF C4 C4 C 0 1 N N N N N N 75.150 32.064 56.458 0.292 -0.069 2.629 C4 CXF 4
CXF C5 C5 C 0 1 N N N N N N 74.492 30.967 57.347 1.426 0.059 1.611 C5 CXF 5
CXF C6 C6 C 0 1 N N N N N N 73.532 31.718 58.320 1.017 -0.621 0.303 C6 CXF 6
CXF N8 N8 N 0 1 N N N N N N 71.627 33.177 58.521 -0.633 -0.603 -1.500 N8 CXF 7
CXF C7 C7 C 0 1 N N N N N N 70.347 33.082 58.928 -0.150 -0.151 -2.675 C7 CXF 8
CXF O9 O9 O 0 1 N N N N N N 69.638 32.276 58.405 0.607 0.794 -2.695 O9 CXF 9
CXF H1 H1 H 0 1 N N N N N N 71.805 31.839 56.886 -0.039 1.103 -0.435 H1 CXF 10
CXF H21 1H2 H 0 1 N N N N N N 72.492 34.315 56.195 -2.273 0.397 0.376 H21 CXF 11
CXF H22 2H2 H 0 1 N N N N N N 73.804 34.268 57.250 -1.578 -1.134 0.957 H22 CXF 12
CXF H31 1H3 H 0 1 N N N N N N 73.459 32.167 54.859 -0.765 1.655 1.890 H31 CXF 13
CXF H32 2H3 H 0 1 N N N N N N 74.452 33.477 54.743 -1.775 0.509 2.803 H32 CXF 14
CXF H41 1H4 H 0 1 N N N N N N 75.975 31.646 55.834 0.583 0.415 3.561 H41 CXF 15
CXF H42 2H4 H 0 1 N N N N N N 75.744 32.784 57.067 0.090 -1.124 2.817 H42 CXF 16
CXF H51 1H5 H 0 1 N N N N N N 73.990 30.162 56.760 1.628 1.113 1.424 H51 CXF 17
CXF H52 2H5 H 0 1 N N N N N N 75.231 30.314 57.867 2.324 -0.418 2.004 H52 CXF 18
CXF H61 1H6 H 0 1 N N N N N N 74.090 32.385 59.016 0.815 -1.676 0.491 H61 CXF 19
CXF H62 2H6 H 0 1 N N N N N N 73.084 31.027 59.072 1.826 -0.530 -0.421 H62 CXF 20
CXF HN8 HN8 H 0 1 N N N N N N 72.071 33.909 59.074 -1.239 -1.360 -1.484 HN8 CXF 21
CXF H7 H7 H 0 1 N N N N N N 69.863 33.684 59.715 -0.443 -0.629 -3.598 H7 CXF 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CXF C1 C2 SING N N 1
CXF C1 C6 SING N N 2
CXF C1 N8 SING N N 3
CXF C1 H1 SING N N 4
CXF C2 C3 SING N N 5
CXF C2 H21 SING N N 6
CXF C2 H22 SING N N 7
CXF C3 C4 SING N N 8
CXF C3 H31 SING N N 9
CXF C3 H32 SING N N 10
CXF C4 C5 SING N N 11
CXF C4 H41 SING N N 12
CXF C4 H42 SING N N 13
CXF C5 C6 SING N N 14
CXF C5 H51 SING N N 15
CXF C5 H52 SING N N 16
CXF C6 H61 SING N N 17
CXF C6 H62 SING N N 18
CXF N8 C7 SING N N 19
CXF N8 HN8 SING N N 20
CXF C7 O9 DOUB N N 21
CXF C7 H7 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CXF SMILES ACDLabs 10.04 O=CNC1CCCCC1
CXF SMILES_CANONICAL CACTVS 3.341 O=CNC1CCCCC1
CXF SMILES CACTVS 3.341 O=CNC1CCCCC1
CXF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)NC=O
CXF SMILES "OpenEye OEToolkits" 1.5.0 C1CCC(CC1)NC=O
CXF InChI InChI 1.03 InChI=1S/C7H13NO/c9-6-8-7-4-2-1-3-5-7/h6-7H,1-5H2,(H,8,9)
CXF InChIKey InChI 1.03 SWGXDLRCJNEEGZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CXF "SYSTEMATIC NAME" ACDLabs 10.04 N-cyclohexylformamide
CXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-cyclohexylmethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CXF 'Create component' 1999-07-08 RCSB
CXF 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CXF
_pdbe_chem_comp_drugbank_details.drugbank_id DB03559
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Cyclohexylformamide
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 766-93-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CXF Cyclohexylformamide DrugBank ?
CXF Formamidocyclohexane DrugBank ?
CXF N-cyclohexylformamide DrugBank ?
CXF N-formylcyclohexylamine DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CXF
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03559
_pdbe_chem_comp_drugbank_classification.parent 'Secondary carboxylic acid amides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as secondary carboxylic acid amides. These are compounds containing a secondary carboxylic acid amide functional group, with the general structure RC(=O)N(R')H (R,R'=alkyl, aryl)."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CXF DB03559 'Alcohol dehydrogenase 1C' Humans P00326 unknown 1
CXF DB03559 'All-trans-retinol dehydrogenase [NAD(+)] ADH4' Humans P08319 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CXF C1 C 4.299 -0.375 1
CXF C2 C 3.000 -1.125 2
CXF C3 C 3.000 -2.625 3
CXF C4 C 4.299 -3.375 4
CXF C5 C 5.598 -2.625 5
CXF C6 C 5.598 -1.125 6
CXF N8 N 4.299 1.125 7
CXF C7 C 5.598 1.875 8
CXF O9 O 5.598 3.375 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CXF C1 C2 SINGLE NONE 1
CXF C1 C6 SINGLE NONE 2
CXF C1 N8 SINGLE NONE 3
CXF C2 C3 SINGLE NONE 4
CXF C3 C4 SINGLE NONE 5
CXF C4 C5 SINGLE NONE 6
CXF C5 C6 SINGLE NONE 7
CXF N8 C7 SINGLE NONE 8
CXF C7 O9 DOUBLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CXF MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CXF cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CXF C1 S1 1
CXF C2 S1 1
CXF C3 S1 1
CXF C4 S1 1
CXF C5 S1 1
CXF C6 S1 1
CXF C1 F1 1
CXF C2 F1 1
CXF C3 F1 1
CXF C4 F1 1
CXF C5 F1 1
CXF C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CXF
_pdbe_chem_comp_rdkit_properties.exactmw 127.100
_pdbe_chem_comp_rdkit_properties.amw 127.187
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 73.957
_pdbe_chem_comp_rdkit_properties.tpsa 29.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.065
_pdbe_chem_comp_rdkit_properties.CrippenMR 36.073
_pdbe_chem_comp_rdkit_properties.chi0v 4.355
_pdbe_chem_comp_rdkit_properties.chi1v 2.151
_pdbe_chem_comp_rdkit_properties.chi2v 0.644
_pdbe_chem_comp_rdkit_properties.chi3v 0.644
_pdbe_chem_comp_rdkit_properties.chi4v 0.345
_pdbe_chem_comp_rdkit_properties.chi0n 17.355
_pdbe_chem_comp_rdkit_properties.chi1n 8.599
_pdbe_chem_comp_rdkit_properties.chi2n 0.644
_pdbe_chem_comp_rdkit_properties.chi3n 0.644
_pdbe_chem_comp_rdkit_properties.chi4n 0.345
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.530
_pdbe_chem_comp_rdkit_properties.kappa1 1.025
_pdbe_chem_comp_rdkit_properties.kappa2 3.487
_pdbe_chem_comp_rdkit_properties.kappa3 2.039
_pdbe_chem_comp_rdkit_properties.Phi 0.397
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CXF UniChem DrugBank DB03559
CXF UniChem 'KEGG LIGAND' C11519
CXF UniChem ChEBI 17945
CXF UniChem ZINC ZINC000000332634
CXF UniChem fdasrs X2CFE4SDT6
CXF UniChem HMDB HMDB0255105
CXF UniChem NMRShiftDB 74266
CXF UniChem 'EPA CompTox Dashboard' DTXSID40227416
CXF UniChem MetaboLights MTBLC17945
CXF UniChem BRENDA 167178
CXF UniChem BRENDA 48019
CXF UniChem Rhea 17945
CXF UniChem ChemicalBook CB1319828
CXF UniChem 'Probes And Drugs' PD006813
CXF UniChem CCDC WOJHEJ
CXF UniChem BindingDb 50064278
CXF UniChem eMolecules 479288
CXF UniChem SureChEMBL SCHEMBL26146
CXF UniChem 'PubChem TPHARMA' 16165940
CXF UniChem PubChem 13017
CXF UniChem Mcule MCULE-5868381758
CXF UniChem ACTor 766-93-8
CXF UniChem Nikkaji J49.655C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CXF C1 0.701 0.301 -0.466 ETKDGv3 1
CXF C2 -0.104 -0.998 -0.723 ETKDGv3 2
CXF C3 -1.084 -1.299 0.417 ETKDGv3 3
CXF C4 -2.116 -0.166 0.593 ETKDGv3 4
CXF C5 -1.574 1.225 0.206 ETKDGv3 5
CXF C6 -0.060 1.319 0.419 ETKDGv3 6
CXF N8 1.992 -0.024 0.148 ETKDGv3 7
CXF C7 3.186 -0.226 -0.617 ETKDGv3 8
CXF O9 3.197 -0.050 -1.864 ETKDGv3 9
CXF H1 0.872 0.789 -1.452 ETKDGv3 10
CXF H21 -0.683 -0.892 -1.667 ETKDGv3 11
CXF H22 0.583 -1.861 -0.860 ETKDGv3 12
CXF H31 -1.613 -2.254 0.211 ETKDGv3 13
CXF H32 -0.509 -1.430 1.361 ETKDGv3 14
CXF H41 -3.012 -0.384 -0.029 ETKDGv3 15
CXF H42 -2.447 -0.151 1.655 ETKDGv3 16
CXF H51 -1.801 1.428 -0.864 ETKDGv3 17
CXF H52 -2.085 2.004 0.812 ETKDGv3 18
CXF H61 0.285 2.348 0.180 ETKDGv3 19
CXF H62 0.153 1.139 1.496 ETKDGv3 20
CXF HN8 2.021 -0.280 1.160 ETKDGv3 21
CXF H7 4.094 -0.538 -0.117 ETKDGv3 22
#