data_CWB
#
_chem_comp.id CWB
_chem_comp.name 1-methyl-N-[(1R,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C18 H24 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms GRANISETRON
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-10-09
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 312.409
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CWB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2YME
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CWB O13 O13 O 0 1 N N N N N N 6.053 67.032 32.224 0.665 -2.241 0.071 O13 CWB 1
CWB C12 C12 C 0 1 N N N N N N 7.264 67.128 31.945 0.481 -1.039 0.114 C12 CWB 2
CWB C14 C14 C 0 1 Y N N N N N 8.015 68.445 32.274 1.629 -0.116 0.079 C14 CWB 3
CWB C23 C23 C 0 1 Y N N N N N 7.463 69.662 32.946 3.050 -0.481 -0.004 C23 CWB 4
CWB C22 C22 C 0 1 Y N N N N N 6.209 70.032 33.459 3.768 -1.671 -0.074 C22 CWB 5
CWB C21 C21 C 0 1 Y N N N N N 6.040 71.308 34.047 5.133 -1.631 -0.144 C21 CWB 6
CWB C20 C20 C 0 1 Y N N N N N 7.127 72.207 34.120 5.804 -0.415 -0.145 C20 CWB 7
CWB C19 C19 C 0 1 Y N N N N N 8.388 71.835 33.606 5.118 0.765 -0.078 C19 CWB 8
CWB C18 C18 C 0 1 Y N N N N N 8.560 70.573 33.021 3.728 0.754 -0.006 C18 CWB 9
CWB N16 N16 N 0 1 Y N N N N N 9.656 69.950 32.447 2.759 1.719 0.071 N16 CWB 10
CWB C17 C17 C 0 1 N N N N N N 10.989 70.544 32.326 3.026 3.159 0.096 C17 CWB 11
CWB N15 N15 N 0 1 Y N N N N N 9.313 68.710 32.019 1.586 1.199 0.112 N15 CWB 12
CWB N11 N11 N 0 1 N N N N N N 7.865 66.215 30.969 -0.774 -0.552 0.186 N11 CWB 13
CWB C09 C09 C 0 1 N N N N N N 7.784 64.758 31.046 -1.911 -1.465 0.214 C09 CWB 14
CWB C10 C10 C 0 1 N N N N N N 9.067 64.264 30.662 -2.669 -1.468 -1.107 C10 CWB 15
CWB C03 C03 C 0 1 N N S N N N 9.097 62.766 30.616 -3.620 -0.274 -1.227 C03 CWB 16
CWB C08 C08 C 0 1 N N N N N N 6.726 64.243 30.125 -2.819 -1.205 1.410 C08 CWB 17
CWB C07 C07 C 0 1 N N R N N N 6.733 62.751 30.094 -3.762 -0.024 1.168 C07 CWB 18
CWB N02 N02 N 0 1 N N N N N N 7.775 62.173 30.903 -4.498 -0.250 -0.067 N02 CWB 19
CWB C01 C01 C 0 1 N N N N N N 7.661 60.778 31.110 -5.724 0.507 -0.219 C01 CWB 20
CWB C06 C06 C 0 1 N N N N N N 6.951 62.251 28.662 -2.987 1.285 1.140 C06 CWB 21
CWB C05 C05 C 0 1 N N N N N N 8.384 62.582 28.223 -3.040 1.975 -0.214 C05 CWB 22
CWB C04 C04 C 0 1 N N N N N N 9.442 62.280 29.264 -2.838 1.021 -1.380 C04 CWB 23
CWB H11 H11 H 0 1 N N N N N N 8.363 66.615 30.200 -0.920 0.407 0.220 H11 CWB 24
CWB H22 H22 H 0 1 N N N N N N 5.377 69.345 33.405 3.250 -2.619 -0.073 H22 CWB 25
CWB H21 H21 H 0 1 N N N N N N 5.077 71.595 34.441 5.693 -2.553 -0.198 H21 CWB 26
CWB H20 H20 H 0 1 N N N N N N 6.993 73.180 34.569 6.882 -0.402 -0.200 H20 CWB 27
CWB H19 H19 H 0 1 N N N N N N 9.219 72.522 33.663 5.652 1.703 -0.079 H19 CWB 28
CWB H171 H171 H 0 0 N N N N N N 11.666 69.829 31.835 3.039 3.545 -0.923 H171 CWB 29
CWB H172 H172 H 0 0 N N N N N N 10.928 71.463 31.725 2.245 3.664 0.665 H172 CWB 30
CWB H173 H173 H 0 0 N N N N N N 11.375 70.786 33.327 3.992 3.341 0.566 H173 CWB 31
CWB H09 H09 H 0 1 N N N N N N 7.550 64.452 32.076 -1.490 -2.488 0.346 H09 CWB 32
CWB H101 H101 H 0 0 N N N N N N 9.315 64.656 29.665 -1.957 -1.436 -1.937 H101 CWB 33
CWB H102 H102 H 0 0 N N N N N N 9.815 64.613 31.389 -3.251 -2.391 -1.190 H102 CWB 34
CWB H081 H081 H 0 0 N N N N N N 5.743 64.592 30.474 -3.417 -2.099 1.613 H081 CWB 35
CWB H082 H082 H 0 0 N N N N N N 6.913 64.626 29.111 -2.208 -0.994 2.292 H082 CWB 36
CWB H03 H03 H 0 1 N N N N N N 9.835 62.394 31.342 -4.233 -0.420 -2.128 H03 CWB 37
CWB H041 H041 H 0 0 N N N N N N 10.383 62.757 28.952 -1.776 0.810 -1.517 H041 CWB 38
CWB H042 H042 H 0 0 N N N N N N 9.582 61.190 29.311 -3.177 1.523 -2.303 H042 CWB 39
CWB H07 H07 H 0 1 N N N N N N 5.755 62.386 30.441 -4.478 0.013 2.002 H07 CWB 40
CWB H061 H061 H 0 0 N N N N N N 6.797 61.162 28.625 -3.427 1.962 1.893 H061 CWB 41
CWB H062 H062 H 0 0 N N N N N N 6.236 62.745 27.987 -1.951 1.120 1.441 H062 CWB 42
CWB H011 H011 H 0 0 N N N N N N 6.610 60.521 31.309 -6.311 0.087 -1.036 H011 CWB 43
CWB H012 H012 H 0 0 N N N N N N 8.005 60.245 30.211 -6.299 0.455 0.706 H012 CWB 44
CWB H013 H013 H 0 0 N N N N N N 8.280 60.483 31.970 -5.484 1.547 -0.440 H013 CWB 45
CWB H051 H051 H 0 0 N N N N N N 8.612 61.996 27.321 -3.983 2.517 -0.326 H051 CWB 46
CWB H052 H052 H 0 0 N N N N N N 8.432 63.655 27.985 -2.241 2.736 -0.246 H052 CWB 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CWB O13 C12 DOUB N N 1
CWB C12 C14 SING N N 2
CWB C12 N11 SING N N 3
CWB C14 C23 SING Y N 4
CWB C14 N15 DOUB Y N 5
CWB C23 C22 SING Y N 6
CWB C23 C18 DOUB Y N 7
CWB C22 C21 DOUB Y N 8
CWB C21 C20 SING Y N 9
CWB C20 C19 DOUB Y N 10
CWB C19 C18 SING Y N 11
CWB C18 N16 SING Y N 12
CWB N16 C17 SING N N 13
CWB N16 N15 SING Y N 14
CWB N11 C09 SING N N 15
CWB C09 C10 SING N N 16
CWB C09 C08 SING N N 17
CWB C10 C03 SING N N 18
CWB C03 N02 SING N N 19
CWB C03 C04 SING N N 20
CWB C08 C07 SING N N 21
CWB C07 N02 SING N N 22
CWB C07 C06 SING N N 23
CWB N02 C01 SING N N 24
CWB C06 C05 SING N N 25
CWB C05 C04 SING N N 26
CWB N11 H11 SING N N 27
CWB C22 H22 SING N N 28
CWB C21 H21 SING N N 29
CWB C20 H20 SING N N 30
CWB C19 H19 SING N N 31
CWB C17 H171 SING N N 32
CWB C17 H172 SING N N 33
CWB C17 H173 SING N N 34
CWB C09 H09 SING N N 35
CWB C10 H101 SING N N 36
CWB C10 H102 SING N N 37
CWB C08 H081 SING N N 38
CWB C08 H082 SING N N 39
CWB C03 H03 SING N N 40
CWB C04 H041 SING N N 41
CWB C04 H042 SING N N 42
CWB C07 H07 SING N N 43
CWB C06 H061 SING N N 44
CWB C06 H062 SING N N 45
CWB C01 H011 SING N N 46
CWB C01 H012 SING N N 47
CWB C01 H013 SING N N 48
CWB C05 H051 SING N N 49
CWB C05 H052 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CWB SMILES ACDLabs 12.01 O=C(c2nn(c1ccccc12)C)NC4CC3N(C)C(CCC3)C4
CWB InChI InChI 1.03 InChI=1S/C18H24N4O/c1-21-13-6-5-7-14(21)11-12(10-13)19-18(23)17-15-8-3-4-9-16(15)22(2)20-17/h3-4,8-9,12-14H,5-7,10-11H2,1-2H3,(H,19,23)/t12-,13+,14-
CWB InChIKey InChI 1.03 MFWNKCLOYSRHCJ-BTTYYORXSA-N
CWB SMILES_CANONICAL CACTVS 3.385 CN1[C@@H]2CCC[C@H]1CC(C2)NC(=O)c3nn(C)c4ccccc34
CWB SMILES CACTVS 3.385 CN1[CH]2CCC[CH]1CC(C2)NC(=O)c3nn(C)c4ccccc34
CWB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 Cn1c2ccccc2c(n1)C(=O)NC3C[C@H]4CCC[C@@H](C3)N4C
CWB SMILES "OpenEye OEToolkits" 1.9.2 Cn1c2ccccc2c(n1)C(=O)NC3CC4CCCC(C3)N4C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CWB "SYSTEMATIC NAME" ACDLabs 12.01 1-methyl-N-[(3-endo)-9-methyl-9-azabicyclo[3.3.1]non-3-yl]-1H-indazole-3-carboxamide
CWB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1-methyl-N-[(1R,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CWB 'Create component' 2012-10-09 EBI
CWB 'Initial release' 2012-12-21 RCSB
CWB 'Modify descriptor' 2014-09-05 RCSB
CWB 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CWB
_pdbx_chem_comp_synonyms.name GRANISETRON
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id CWB
_pdbe_chem_comp_drugbank_details.drugbank_id DB00889
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Granisetron
_pdbe_chem_comp_drugbank_details.description
'A serotonin receptor (5HT-3 selective) antagonist that has been used as an antiemetic and antinauseant for cancer chemotherapy patients.'
_pdbe_chem_comp_drugbank_details.cas_number 109889-09-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Granisetron is a potent, selective antagonist of 5-HT<sub>3</sub> receptors. The antiemetic activity of the drug is brought about through the inhibition of 5-HT3 receptors present both centrally (medullary chemoreceptor zone) and peripherally (GI tract). This inhibition of 5-HT3 receptors in turn inhibits the visceral afferent stimulation of the vomiting center, likely indirectly at the level of the area postrema, as well as through direct inhibition of serotonin activity within the area postrema and the chemoreceptor trigger zone.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CWB GRANISETRON wwPDB ?
CWB Granisetron DrugBank ?
CWB Granisetronum DrugBank ?
CWB Kevatril DrugBank 'International brand'
CWB Sancuso DrugBank 'International brand'
CWB Sustol DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id CWB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00889
_pdbe_chem_comp_drugbank_classification.parent Indazole-3-carboxamides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Benzopyrazoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as indazole-3-carboxamides. These are aromatic compounds containing an indazole ring system that is substituted at the 3-position with a carboxamide group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CWB DB00889 '5-hydroxytryptamine receptor 3A' Humans P46098 yes 1
CWB DB00889 '5-hydroxytryptamine receptor 3B' Humans O95264 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CWB O13 O 3.752 1.398 1
CWB C12 C 2.477 0.603 2
CWB C14 C 1.165 1.300 3
CWB C23 C 0.924 2.782 4
CWB C22 C 1.857 3.953 5
CWB C21 C 1.312 5.352 6
CWB C20 C -0.172 5.573 7
CWB C19 C -1.109 4.402 8
CWB C18 C -0.560 3.004 9
CWB N16 N -1.234 1.665 10
CWB C17 C -2.713 1.420 11
CWB N15 N -0.163 0.608 12
CWB N11 N 2.521 -0.928 13
CWB C09 C 1.224 -1.773 14
CWB C10 C 1.247 -3.324 15
CWB C03 C -0.116 -3.938 16
CWB C08 C -0.194 -1.143 17
CWB C07 C -1.293 -2.155 18
CWB N02 N -0.909 -3.181 19
CWB C01 C -1.750 -3.737 20
CWB C06 C -2.638 -2.521 21
CWB C05 C -2.646 -4.329 22
CWB C04 C -0.981 -5.031 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CWB O13 C12 DOUBLE NONE 1
CWB C12 C14 SINGLE NONE 2
CWB C12 N11 SINGLE NONE 3
CWB C14 C23 SINGLE NONE 4
CWB C14 N15 DOUBLE NONE 5
CWB C23 C22 SINGLE NONE 6
CWB C23 C18 DOUBLE NONE 7
CWB C22 C21 DOUBLE NONE 8
CWB C21 C20 SINGLE NONE 9
CWB C20 C19 DOUBLE NONE 10
CWB C19 C18 SINGLE NONE 11
CWB C18 N16 SINGLE NONE 12
CWB N16 C17 SINGLE NONE 13
CWB N16 N15 SINGLE NONE 14
CWB C09 N11 SINGLE BEGINDASH 15
CWB C09 C10 SINGLE NONE 16
CWB C09 C08 SINGLE NONE 17
CWB C10 C03 SINGLE NONE 18
CWB C03 N02 SINGLE NONE 19
CWB C03 C04 SINGLE NONE 20
CWB C08 C07 SINGLE NONE 21
CWB C07 N02 SINGLE NONE 22
CWB C07 C06 SINGLE NONE 23
CWB N02 C01 SINGLE NONE 24
CWB C06 C05 SINGLE NONE 25
CWB C05 C04 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CWB MurckoScaffold S1 scaffold 'O=C(N[C@H]1C[C@H]2CCC[C@@H](C1)N2)c1n[nH]c2ccccc12' InChI=1S/C16H20N4O/c21-16(15-13-6-1-2-7-14(13)19-20-15)18-12-8-10-4-3-5-11(9-12)17-10/h1-2,6-7,10-12,17H,3-5,8-9H2,(H,18,21)(H,19,20)/t10-,11+,12+ CUKSCZZOMLDMBH-GDNZZTSVSA-N
CWB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CWB phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CWB pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
CWB Z381729066 F4 fragment 'CC(C)NC(=O)c1cc[nH]n1' InChI=1S/C7H11N3O/c1-5(2)9-7(11)6-3-4-8-10-6/h3-5H,1-2H3,(H,8,10)(H,9,11) KIDXTSGRYSIIRY-UHFFFAOYSA-N
CWB Z2697514548 F5 fragment Cn1nc(C(N)=O)c2ccccc21 InChI=1S/C9H9N3O/c1-12-7-5-3-2-4-6(7)8(11-12)9(10)13/h2-5H,1H3,(H2,10,13) PVROETJHCUDAFG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CWB O13 S1 1
CWB C12 S1 1
CWB C14 S1 1
CWB C23 S1 1
CWB C22 S1 1
CWB C21 S1 1
CWB C20 S1 1
CWB C19 S1 1
CWB C18 S1 1
CWB N16 S1 1
CWB N15 S1 1
CWB N11 S1 1
CWB C09 S1 1
CWB C10 S1 1
CWB C03 S1 1
CWB C08 S1 1
CWB C07 S1 1
CWB N02 S1 1
CWB C06 S1 1
CWB C05 S1 1
CWB C04 S1 1
CWB N11 F1 1
CWB C12 F1 1
CWB O13 F1 1
CWB C14 F1 1
CWB C23 F2 1
CWB C22 F2 1
CWB C21 F2 1
CWB C20 F2 1
CWB C19 F2 1
CWB C18 F2 1
CWB C14 F3 1
CWB C23 F3 1
CWB C18 F3 1
CWB N16 F3 1
CWB N15 F3 1
CWB C10 F4 1
CWB C09 F4 1
CWB C08 F4 1
CWB N11 F4 1
CWB C12 F4 1
CWB O13 F4 1
CWB C14 F4 1
CWB C23 F4 1
CWB C18 F4 1
CWB N16 F4 1
CWB N15 F4 1
CWB C17 F5 1
CWB N16 F5 1
CWB N15 F5 1
CWB C14 F5 1
CWB C12 F5 1
CWB O13 F5 1
CWB N11 F5 1
CWB C23 F5 1
CWB C22 F5 1
CWB C21 F5 1
CWB C20 F5 1
CWB C19 F5 1
CWB C18 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CWB
_pdbe_chem_comp_rdkit_properties.exactmw 312.195
_pdbe_chem_comp_rdkit_properties.amw 312.417
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 169.972
_pdbe_chem_comp_rdkit_properties.tpsa 50.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.835
_pdbe_chem_comp_rdkit_properties.CrippenMR 87.920
_pdbe_chem_comp_rdkit_properties.chi0v 11.197
_pdbe_chem_comp_rdkit_properties.chi1v 6.193
_pdbe_chem_comp_rdkit_properties.chi2v 3.015
_pdbe_chem_comp_rdkit_properties.chi3v 3.015
_pdbe_chem_comp_rdkit_properties.chi4v 1.999
_pdbe_chem_comp_rdkit_properties.chi0n 35.197
_pdbe_chem_comp_rdkit_properties.chi1n 18.140
_pdbe_chem_comp_rdkit_properties.chi2n 3.015
_pdbe_chem_comp_rdkit_properties.chi3n 3.015
_pdbe_chem_comp_rdkit_properties.chi4n 1.999
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.880
_pdbe_chem_comp_rdkit_properties.kappa1 3.692
_pdbe_chem_comp_rdkit_properties.kappa2 5.638
_pdbe_chem_comp_rdkit_properties.kappa3 2.528
_pdbe_chem_comp_rdkit_properties.Phi 0.905
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CWB UniChem DrugBank DB00889
CWB UniChem ChEBI 5537
CWB UniChem ZINC ZINC000100018854
CWB UniChem eMolecules 32452667
CWB UniChem fdasrs WZG3J2MCOL
CWB UniChem SureChEMBL SCHEMBL4890
CWB UniChem 'PubChem TPHARMA' 14752282
CWB UniChem ACTor 109889-09-0
CWB UniChem Nikkaji J258.427A
CWB UniChem BindingDb 50443668
CWB UniChem 'EPA CompTox Dashboard' DTXSID0023111
CWB UniChem DrugCentral 1329
CWB UniChem ChemicalBook CB2728852
CWB UniChem MedChemExpress HY-B0071
CWB UniChem 'Probes And Drugs' PD013356
CWB UniChem CCDC KUQDAC
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CWB O13 1.199 1.861 0.077 ETKDGv3 1
CWB C12 1.344 0.659 0.426 ETKDGv3 2
CWB C14 2.698 0.083 0.504 ETKDGv3 3
CWB C23 3.965 0.754 0.186 ETKDGv3 4
CWB C22 4.283 2.100 -0.325 ETKDGv3 5
CWB C21 5.569 2.385 -0.600 ETKDGv3 6
CWB C20 6.633 1.358 -0.398 ETKDGv3 7
CWB C19 6.320 0.133 0.063 ETKDGv3 8
CWB C18 4.906 -0.150 0.366 ETKDGv3 9
CWB N16 4.318 -1.363 0.811 ETKDGv3 10
CWB C17 4.928 -2.684 0.767 ETKDGv3 11
CWB N15 2.933 -1.149 0.844 ETKDGv3 12
CWB N11 0.194 -0.138 0.752 ETKDGv3 13
CWB C09 -1.175 0.377 0.632 ETKDGv3 14
CWB C10 -2.163 -0.505 1.433 ETKDGv3 15
CWB C03 -3.653 -0.157 1.137 ETKDGv3 16
CWB C08 -1.584 0.474 -0.856 ETKDGv3 17
CWB C07 -3.102 0.769 -1.043 ETKDGv3 18
CWB N02 -3.721 1.041 0.273 ETKDGv3 19
CWB C01 -5.059 1.651 0.194 ETKDGv3 20
CWB C06 -3.824 -0.389 -1.779 ETKDGv3 21
CWB C05 -3.907 -1.657 -0.920 ETKDGv3 22
CWB C04 -4.402 -1.355 0.501 ETKDGv3 23
CWB H11 0.345 -1.108 1.112 ETKDGv3 24
CWB H22 3.511 2.841 -0.480 ETKDGv3 25
CWB H21 5.836 3.364 -0.976 ETKDGv3 26
CWB H20 7.662 1.600 -0.629 ETKDGv3 27
CWB H19 7.085 -0.618 0.206 ETKDGv3 28
CWB H171 5.954 -2.641 1.189 ETKDGv3 29
CWB H172 4.325 -3.396 1.368 ETKDGv3 30
CWB H173 4.974 -3.038 -0.284 ETKDGv3 31
CWB H09 -1.210 1.398 1.076 ETKDGv3 32
CWB H101 -1.962 -0.356 2.517 ETKDGv3 33
CWB H102 -1.957 -1.578 1.225 ETKDGv3 34
CWB H081 -1.287 -0.462 -1.377 ETKDGv3 35
CWB H082 -1.000 1.291 -1.332 ETKDGv3 36
CWB H03 -4.143 0.067 2.111 ETKDGv3 37
CWB H041 -4.273 -2.260 1.135 ETKDGv3 38
CWB H042 -5.493 -1.147 0.473 ETKDGv3 39
CWB H07 -3.190 1.677 -1.681 ETKDGv3 40
CWB H061 -4.849 -0.072 -2.066 ETKDGv3 41
CWB H062 -3.292 -0.622 -2.727 ETKDGv3 42
CWB H011 -5.417 1.910 1.213 ETKDGv3 43
CWB H012 -5.009 2.596 -0.388 ETKDGv3 44
CWB H013 -5.801 0.980 -0.283 ETKDGv3 45
CWB H051 -4.600 -2.381 -1.402 ETKDGv3 46
CWB H052 -2.910 -2.144 -0.874 ETKDGv3 47
#