data_CQ5
#
_chem_comp.id CQ5
_chem_comp.name
3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]-6-(2-pyrrolidin-1-ylethylamino)pyrimidin-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H37 N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-12-01
_chem_comp.pdbx_modified_date 2018-04-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.604
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CQ5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6F5H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CQ5 N N1 N 0 1 N N N N N N 33.678 14.453 -7.212 3.476 0.689 -0.951 N CQ5 1
CQ5 C C1 C 0 1 N N N N N N 34.462 13.084 -9.064 3.723 2.605 0.400 C CQ5 2
CQ5 O O1 O 0 1 N N N N N N 32.899 11.574 -9.852 1.904 3.971 0.548 O CQ5 3
CQ5 O2 O2 O 0 1 N N N N N N 26.096 14.052 -12.157 -3.356 -2.015 0.804 O2 CQ5 4
CQ5 C16 C2 C 0 1 N N N N N N 27.265 13.815 -12.348 -3.645 -0.848 0.643 C16 CQ5 5
CQ5 C17 C3 C 0 1 N N N N N N 27.711 13.584 -13.801 -5.062 -0.462 0.307 C17 CQ5 6
CQ5 C18 C4 C 0 1 N N R N N N 27.551 12.137 -14.280 -5.929 -1.721 0.228 C18 CQ5 7
CQ5 C25 C5 C 0 1 N N N N N N 27.981 12.026 -15.761 -6.004 -2.375 1.609 C25 CQ5 8
CQ5 C19 C6 C 0 1 Y N N N N N 28.314 11.149 -13.398 -7.316 -1.348 -0.227 C19 CQ5 9
CQ5 C24 C7 C 0 1 Y N N N N N 29.686 10.941 -13.483 -8.073 -0.462 0.516 C24 CQ5 10
CQ5 C23 C8 C 0 1 Y N N N N N 30.307 10.025 -12.656 -9.345 -0.120 0.098 C23 CQ5 11
CQ5 C22 C9 C 0 1 Y N N N N N 29.563 9.314 -11.726 -9.861 -0.663 -1.063 C22 CQ5 12
CQ5 C21 C10 C 0 1 Y N N N N N 28.201 9.530 -11.629 -9.104 -1.548 -1.807 C21 CQ5 13
CQ5 C20 C11 C 0 1 Y N N N N N 27.579 10.431 -12.458 -7.829 -1.887 -1.392 C20 CQ5 14
CQ5 N4 N2 N 0 1 N N N N N N 28.098 13.811 -11.233 -2.698 0.103 0.765 N4 CQ5 15
CQ5 C13 C12 C 0 1 N N N N N N 29.548 14.105 -11.348 -3.034 1.521 0.580 C13 CQ5 16
CQ5 C12 C13 C 0 1 N N N N N N 30.423 13.241 -10.451 -2.088 2.119 -0.467 C12 CQ5 17
CQ5 C14 C14 C 0 1 N N N N N N 27.587 13.597 -9.845 -1.312 -0.258 1.092 C14 CQ5 18
CQ5 C15 C15 C 0 1 N N N N N N 28.491 12.746 -8.941 -0.381 0.356 0.042 C15 CQ5 19
CQ5 C5 C16 C 0 1 N N N N N N 29.947 13.220 -8.976 -0.639 1.866 -0.043 C5 CQ5 20
CQ5 O1 O3 O 0 1 N N N N N N 29.971 14.555 -8.492 -0.409 2.454 1.239 O1 CQ5 21
CQ5 C4 C17 C 0 1 N N N N N N 30.835 12.319 -8.088 0.309 2.492 -1.068 C4 CQ5 22
CQ5 N1 N3 N 0 1 N N N N N N 32.204 12.867 -8.115 1.692 2.149 -0.727 N1 CQ5 23
CQ5 C3 C18 C 0 1 N N N N N N 33.143 12.453 -9.053 2.402 2.955 0.089 C3 CQ5 24
CQ5 C2 C19 C 0 1 N N N N N N 32.514 13.874 -7.230 2.248 1.029 -1.230 C2 CQ5 25
CQ5 C1 C20 C 0 1 N N N N N N 34.732 14.049 -8.165 4.243 1.443 -0.146 C1 CQ5 26
CQ5 N2 N4 N 0 1 N N N N N N 35.918 14.764 -8.113 5.539 1.062 0.135 N2 CQ5 27
CQ5 C6 C21 C 0 1 N N N N N N 36.960 14.793 -9.154 6.083 -0.168 -0.445 C6 CQ5 28
CQ5 C7 C22 C 0 1 N N N N N N 36.394 15.317 -10.495 7.528 -0.356 0.022 C7 CQ5 29
CQ5 N3 N5 N 0 1 N N N N N N 35.665 16.592 -10.469 8.074 -1.590 -0.560 N3 CQ5 30
CQ5 C11 C23 C 0 1 N N N N N N 36.524 17.753 -10.218 9.527 -1.685 -0.330 C11 CQ5 31
CQ5 C10 C24 C 0 1 N N N N N N 35.744 18.943 -10.789 9.787 -3.013 0.411 C10 CQ5 32
CQ5 C9 C25 C 0 1 N N N N N N 34.650 18.332 -11.661 8.538 -3.862 0.056 C9 CQ5 33
CQ5 C8 C26 C 0 1 N N N N N N 35.047 16.867 -11.772 7.426 -2.783 0.025 C8 CQ5 34
CQ5 H1 H1 H 0 1 N N N N N N 35.209 12.780 -9.783 4.322 3.226 1.049 H1 CQ5 35
CQ5 H2 H2 H 0 1 N N N N N N 28.772 13.861 -13.885 -5.452 0.199 1.081 H2 CQ5 36
CQ5 H3 H3 H 0 1 N N N N N N 27.110 14.233 -14.455 -5.081 0.052 -0.654 H3 CQ5 37
CQ5 H4 H4 H 0 1 N N N N N N 26.483 11.882 -14.224 -5.489 -2.421 -0.482 H4 CQ5 38
CQ5 H5 H5 H 0 1 N N N N N N 27.864 10.986 -16.100 -6.621 -3.272 1.553 H5 CQ5 39
CQ5 H6 H6 H 0 1 N N N N N N 27.351 12.685 -16.376 -5.001 -2.645 1.939 H6 CQ5 40
CQ5 H7 H7 H 0 1 N N N N N N 29.034 12.328 -15.861 -6.444 -1.675 2.319 H7 CQ5 41
CQ5 H8 H8 H 0 1 N N N N N N 30.270 11.499 -14.200 -7.670 -0.037 1.424 H8 CQ5 42
CQ5 H9 H9 H 0 1 N N N N N N 31.372 9.863 -12.734 -9.937 0.572 0.680 H9 CQ5 43
CQ5 H10 H10 H 0 1 N N N N N N 30.046 8.595 -11.081 -10.855 -0.396 -1.389 H10 CQ5 44
CQ5 H11 H11 H 0 1 N N N N N N 27.622 8.987 -10.897 -9.506 -1.974 -2.715 H11 CQ5 45
CQ5 H12 H12 H 0 1 N N N N N N 26.513 10.584 -12.380 -7.236 -2.576 -1.975 H12 CQ5 46
CQ5 H13 H13 H 0 1 N N N N N N 29.853 13.941 -12.392 -4.064 1.611 0.235 H13 CQ5 47
CQ5 H14 H14 H 0 1 N N N N N N 29.710 15.159 -11.079 -2.915 2.052 1.525 H14 CQ5 48
CQ5 H15 H15 H 0 1 N N N N N N 30.411 12.211 -10.837 -2.271 1.650 -1.433 H15 CQ5 49
CQ5 H16 H16 H 0 1 N N N N N N 31.450 13.633 -10.482 -2.262 3.192 -0.544 H16 CQ5 50
CQ5 H17 H17 H 0 1 N N N N N N 27.463 14.582 -9.372 -1.056 0.131 2.078 H17 CQ5 51
CQ5 H18 H18 H 0 1 N N N N N N 26.609 13.098 -9.915 -1.206 -1.343 1.086 H18 CQ5 52
CQ5 H19 H19 H 0 1 N N N N N N 28.121 12.811 -7.907 0.656 0.177 0.325 H19 CQ5 53
CQ5 H20 H20 H 0 1 N N N N N N 28.450 11.701 -9.280 -0.577 -0.101 -0.929 H20 CQ5 54
CQ5 H21 H21 H 0 1 N N N N N N 29.683 14.569 -7.587 0.491 2.333 1.572 H21 CQ5 55
CQ5 H22 H22 H 0 1 N N N N N N 30.453 12.317 -7.056 0.073 2.110 -2.061 H22 CQ5 56
CQ5 H23 H23 H 0 1 N N N N N N 30.836 11.291 -8.480 0.190 3.576 -1.058 H23 CQ5 57
CQ5 H24 H24 H 0 1 N N N N N N 31.762 14.195 -6.524 1.663 0.397 -1.881 H24 CQ5 58
CQ5 H25 H25 H 0 1 N N N N N N 36.382 14.442 -7.287 6.090 1.609 0.716 H25 CQ5 59
CQ5 H26 H26 H 0 1 N N N N N N 37.349 13.775 -9.302 5.483 -1.019 -0.123 H26 CQ5 60
CQ5 H27 H27 H 0 1 N N N N N N 37.777 15.453 -8.826 6.059 -0.098 -1.533 H27 CQ5 61
CQ5 H28 H28 H 0 1 N N N N N N 35.706 14.552 -10.884 8.128 0.494 -0.301 H28 CQ5 62
CQ5 H29 H29 H 0 1 N N N N N N 37.241 15.435 -11.187 7.552 -0.426 1.109 H29 CQ5 63
CQ5 H31 H31 H 0 1 N N N N N N 37.490 17.639 -10.732 10.054 -1.683 -1.284 H31 CQ5 64
CQ5 H32 H32 H 0 1 N N N N N N 36.696 17.883 -9.139 9.861 -0.845 0.280 H32 CQ5 65
CQ5 H33 H33 H 0 1 N N N N N N 36.405 19.582 -11.393 10.695 -3.490 0.041 H33 CQ5 66
CQ5 H34 H34 H 0 1 N N N N N N 35.301 19.538 -9.977 9.851 -2.848 1.487 H34 CQ5 67
CQ5 H35 H35 H 0 1 N N N N N N 34.628 18.808 -12.652 8.651 -4.334 -0.919 H35 CQ5 68
CQ5 H36 H36 H 0 1 N N N N N N 33.665 18.435 -11.183 8.339 -4.606 0.828 H36 CQ5 69
CQ5 H37 H37 H 0 1 N N N N N N 34.165 16.230 -11.934 7.076 -2.569 1.034 H37 CQ5 70
CQ5 H38 H38 H 0 1 N N N N N N 35.766 16.713 -12.591 6.597 -3.111 -0.603 H38 CQ5 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CQ5 C25 C18 SING N N 1
CQ5 C18 C17 SING N N 2
CQ5 C18 C19 SING N N 3
CQ5 C17 C16 SING N N 4
CQ5 C24 C19 DOUB Y N 5
CQ5 C24 C23 SING Y N 6
CQ5 C19 C20 SING Y N 7
CQ5 C23 C22 DOUB Y N 8
CQ5 C20 C21 DOUB Y N 9
CQ5 C16 O2 DOUB N N 10
CQ5 C16 N4 SING N N 11
CQ5 C8 C9 SING N N 12
CQ5 C8 N3 SING N N 13
CQ5 C22 C21 SING Y N 14
CQ5 C9 C10 SING N N 15
CQ5 C13 N4 SING N N 16
CQ5 C13 C12 SING N N 17
CQ5 N4 C14 SING N N 18
CQ5 C10 C11 SING N N 19
CQ5 C7 N3 SING N N 20
CQ5 C7 C6 SING N N 21
CQ5 N3 C11 SING N N 22
CQ5 C12 C5 SING N N 23
CQ5 O C3 DOUB N N 24
CQ5 C14 C15 SING N N 25
CQ5 C6 N2 SING N N 26
CQ5 C C3 SING N N 27
CQ5 C C1 DOUB N N 28
CQ5 C3 N1 SING N N 29
CQ5 C5 C15 SING N N 30
CQ5 C5 O1 SING N N 31
CQ5 C5 C4 SING N N 32
CQ5 C1 N2 SING N N 33
CQ5 C1 N SING N N 34
CQ5 N1 C4 SING N N 35
CQ5 N1 C2 SING N N 36
CQ5 C2 N DOUB N N 37
CQ5 C H1 SING N N 38
CQ5 C17 H2 SING N N 39
CQ5 C17 H3 SING N N 40
CQ5 C18 H4 SING N N 41
CQ5 C25 H5 SING N N 42
CQ5 C25 H6 SING N N 43
CQ5 C25 H7 SING N N 44
CQ5 C24 H8 SING N N 45
CQ5 C23 H9 SING N N 46
CQ5 C22 H10 SING N N 47
CQ5 C21 H11 SING N N 48
CQ5 C20 H12 SING N N 49
CQ5 C13 H13 SING N N 50
CQ5 C13 H14 SING N N 51
CQ5 C12 H15 SING N N 52
CQ5 C12 H16 SING N N 53
CQ5 C14 H17 SING N N 54
CQ5 C14 H18 SING N N 55
CQ5 C15 H19 SING N N 56
CQ5 C15 H20 SING N N 57
CQ5 O1 H21 SING N N 58
CQ5 C4 H22 SING N N 59
CQ5 C4 H23 SING N N 60
CQ5 C2 H24 SING N N 61
CQ5 N2 H25 SING N N 62
CQ5 C6 H26 SING N N 63
CQ5 C6 H27 SING N N 64
CQ5 C7 H28 SING N N 65
CQ5 C7 H29 SING N N 66
CQ5 C11 H31 SING N N 67
CQ5 C11 H32 SING N N 68
CQ5 C10 H33 SING N N 69
CQ5 C10 H34 SING N N 70
CQ5 C9 H35 SING N N 71
CQ5 C9 H36 SING N N 72
CQ5 C8 H37 SING N N 73
CQ5 C8 H38 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CQ5 InChI InChI 1.03 InChI=1S/C26H37N5O3/c1-21(22-7-3-2-4-8-22)17-24(32)30-14-9-26(34,10-15-30)19-31-20-28-23(18-25(31)33)27-11-16-29-12-5-6-13-29/h2-4,7-8,18,20-21,27,34H,5-6,9-17,19H2,1H3/t21-/m1/s1
CQ5 InChIKey InChI 1.03 VJDZJAUBPMXVAF-OAQYLSRUSA-N
CQ5 SMILES_CANONICAL CACTVS 3.385 C[C@H](CC(=O)N1CCC(O)(CC1)CN2C=NC(=CC2=O)NCCN3CCCC3)c4ccccc4
CQ5 SMILES CACTVS 3.385 C[CH](CC(=O)N1CCC(O)(CC1)CN2C=NC(=CC2=O)NCCN3CCCC3)c4ccccc4
CQ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@H](CC(=O)N1CCC(CC1)(CN2C=NC(=CC2=O)NCCN3CCCC3)O)c4ccccc4
CQ5 SMILES "OpenEye OEToolkits" 2.0.6 CC(CC(=O)N1CCC(CC1)(CN2C=NC(=CC2=O)NCCN3CCCC3)O)c4ccccc4
#
_pdbx_chem_comp_identifier.comp_id CQ5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
3-[[4-oxidanyl-1-[(3~{R})-3-phenylbutanoyl]piperidin-4-yl]methyl]-6-(2-pyrrolidin-1-ylethylamino)pyrimidin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CQ5 'Create component' 2017-12-01 EBI
CQ5 'Initial release' 2018-04-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CQ5 N N 12.696 4.338 1
CQ5 C C 12.696 1.739 2
CQ5 O O 10.446 0.440 3
CQ5 O2 O 9.495 -3.511 4
CQ5 C16 C 8.196 -2.761 5
CQ5 C17 C 6.897 -3.511 6
CQ5 C18 C 6.897 -5.011 7
CQ5 C25 C 8.196 -5.761 8
CQ5 C19 C 5.598 -5.761 9
CQ5 C24 C 5.598 -7.261 10
CQ5 C23 C 4.299 -8.011 11
CQ5 C22 C 3.000 -7.261 12
CQ5 C21 C 3.000 -5.761 13
CQ5 C20 C 4.299 -5.011 14
CQ5 N4 N 8.196 -1.261 15
CQ5 C13 C 9.495 -0.511 16
CQ5 C12 C 9.495 0.989 17
CQ5 C14 C 6.897 -0.511 18
CQ5 C15 C 6.897 0.989 19
CQ5 C5 C 8.196 1.739 20
CQ5 O1 O 7.446 3.038 21
CQ5 C4 C 8.946 3.038 22
CQ5 N1 N 10.446 3.038 23
CQ5 C3 C 11.196 1.739 24
CQ5 C2 C 11.196 4.338 25
CQ5 C1 C 13.446 3.038 26
CQ5 N2 N 14.946 3.038 27
CQ5 C6 C 15.696 4.338 28
CQ5 C7 C 17.196 4.338 29
CQ5 N3 N 17.946 5.636 30
CQ5 C11 C 17.336 7.007 31
CQ5 C10 C 18.451 8.011 32
CQ5 C9 C 19.750 7.261 33
CQ5 C8 C 19.438 5.793 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CQ5 C18 C25 SINGLE BEGINWEDGE 1
CQ5 C18 C17 SINGLE NONE 2
CQ5 C18 C19 SINGLE NONE 3
CQ5 C17 C16 SINGLE NONE 4
CQ5 C24 C19 DOUBLE NONE 5
CQ5 C24 C23 SINGLE NONE 6
CQ5 C19 C20 SINGLE NONE 7
CQ5 C23 C22 DOUBLE NONE 8
CQ5 C20 C21 DOUBLE NONE 9
CQ5 C16 O2 DOUBLE NONE 10
CQ5 C16 N4 SINGLE NONE 11
CQ5 C8 C9 SINGLE NONE 12
CQ5 C8 N3 SINGLE NONE 13
CQ5 C22 C21 SINGLE NONE 14
CQ5 C9 C10 SINGLE NONE 15
CQ5 C13 N4 SINGLE NONE 16
CQ5 C13 C12 SINGLE NONE 17
CQ5 N4 C14 SINGLE NONE 18
CQ5 C10 C11 SINGLE NONE 19
CQ5 C7 N3 SINGLE NONE 20
CQ5 C7 C6 SINGLE NONE 21
CQ5 N3 C11 SINGLE NONE 22
CQ5 C12 C5 SINGLE NONE 23
CQ5 O C3 DOUBLE NONE 24
CQ5 C14 C15 SINGLE NONE 25
CQ5 C6 N2 SINGLE NONE 26
CQ5 C C3 SINGLE NONE 27
CQ5 C C1 DOUBLE NONE 28
CQ5 C3 N1 SINGLE NONE 29
CQ5 C5 C15 SINGLE NONE 30
CQ5 C5 O1 SINGLE NONE 31
CQ5 C5 C4 SINGLE NONE 32
CQ5 C1 N2 SINGLE NONE 33
CQ5 C1 N SINGLE NONE 34
CQ5 N1 C4 SINGLE NONE 35
CQ5 N1 C2 SINGLE NONE 36
CQ5 C2 N DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CQ5 MurckoScaffold S1 scaffold O=C(CCc1ccccc1)N1CCC(Cn2cnc(NCCN3CCCC3)cc2=O)CC1 InChI=1S/C25H35N5O2/c31-24(9-8-21-6-2-1-3-7-21)29-15-10-22(11-16-29)19-30-20-27-23(18-25(30)32)26-12-17-28-13-4-5-14-28/h1-3,6-7,18,20,22,26H,4-5,8-17,19H2 PQBKIWKUOLVLCN-UHFFFAOYSA-N
CQ5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CQ5 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CQ5 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CQ5 N S1 1
CQ5 C S1 1
CQ5 O S1 1
CQ5 O2 S1 1
CQ5 C16 S1 1
CQ5 C17 S1 1
CQ5 C18 S1 1
CQ5 C19 S1 1
CQ5 C24 S1 1
CQ5 C23 S1 1
CQ5 C22 S1 1
CQ5 C21 S1 1
CQ5 C20 S1 1
CQ5 N4 S1 1
CQ5 C13 S1 1
CQ5 C12 S1 1
CQ5 C14 S1 1
CQ5 C15 S1 1
CQ5 C5 S1 1
CQ5 C4 S1 1
CQ5 N1 S1 1
CQ5 C3 S1 1
CQ5 C2 S1 1
CQ5 C1 S1 1
CQ5 N2 S1 1
CQ5 C6 S1 1
CQ5 C7 S1 1
CQ5 N3 S1 1
CQ5 C11 S1 1
CQ5 C10 S1 1
CQ5 C9 S1 1
CQ5 C8 S1 1
CQ5 N4 F1 1
CQ5 C16 F1 1
CQ5 O2 F1 1
CQ5 C17 F1 1
CQ5 C19 F2 1
CQ5 C24 F2 1
CQ5 C23 F2 1
CQ5 C22 F2 1
CQ5 C21 F2 1
CQ5 C20 F2 1
CQ5 C F3 1
CQ5 C3 F3 1
CQ5 N1 F3 1
CQ5 C2 F3 1
CQ5 N F3 1
CQ5 C1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CQ5
_pdbe_chem_comp_rdkit_properties.exactmw 467.290
_pdbe_chem_comp_rdkit_properties.amw 467.614
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.577
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 253.281
_pdbe_chem_comp_rdkit_properties.tpsa 90.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.763
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.917
_pdbe_chem_comp_rdkit_properties.chi0v 16.461
_pdbe_chem_comp_rdkit_properties.chi1v 8.769
_pdbe_chem_comp_rdkit_properties.chi2v 3.541
_pdbe_chem_comp_rdkit_properties.chi3v 3.541
_pdbe_chem_comp_rdkit_properties.chi4v 2.074
_pdbe_chem_comp_rdkit_properties.chi0n 53.461
_pdbe_chem_comp_rdkit_properties.chi1n 27.125
_pdbe_chem_comp_rdkit_properties.chi2n 3.541
_pdbe_chem_comp_rdkit_properties.chi3n 3.541
_pdbe_chem_comp_rdkit_properties.chi4n 2.074
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.710
_pdbe_chem_comp_rdkit_properties.kappa1 5.649
_pdbe_chem_comp_rdkit_properties.kappa2 11.144
_pdbe_chem_comp_rdkit_properties.kappa3 6.449
_pdbe_chem_comp_rdkit_properties.Phi 1.851
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CQ5 UniChem SureChEMBL SCHEMBL20086952
CQ5 UniChem PubChem 132990905
CQ5 UniChem BindingDb 50465213
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CQ5 N -3.372 1.101 0.591 ETKDGv3 1
CQ5 C -3.576 -1.176 -0.163 ETKDGv3 2
CQ5 O -2.042 -1.840 -1.830 ETKDGv3 3
CQ5 O2 4.584 -2.638 -1.962 ETKDGv3 4
CQ5 C16 4.537 -1.430 -1.603 ETKDGv3 5
CQ5 C17 5.803 -0.767 -1.127 ETKDGv3 6
CQ5 C18 5.823 -0.626 0.410 ETKDGv3 7
CQ5 C25 5.948 -1.988 1.111 ETKDGv3 8
CQ5 C19 6.932 0.312 0.850 ETKDGv3 9
CQ5 C24 8.230 0.027 0.618 ETKDGv3 10
CQ5 C23 9.290 0.962 1.049 ETKDGv3 11
CQ5 C22 8.968 2.101 1.671 ETKDGv3 12
CQ5 C21 7.551 2.427 1.926 ETKDGv3 13
CQ5 C20 6.587 1.583 1.539 ETKDGv3 14
CQ5 N4 3.273 -0.735 -1.593 ETKDGv3 15
CQ5 C13 2.023 -1.497 -1.475 ETKDGv3 16
CQ5 C12 1.049 -0.740 -0.570 ETKDGv3 17
CQ5 C14 3.222 0.730 -1.723 ETKDGv3 18
CQ5 C15 1.811 1.211 -2.090 ETKDGv3 19
CQ5 C5 0.709 0.685 -1.116 ETKDGv3 20
CQ5 O1 0.586 1.580 -0.034 ETKDGv3 21
CQ5 C4 -0.641 0.673 -1.887 ETKDGv3 22
CQ5 N1 -1.789 0.355 -1.023 ETKDGv3 23
CQ5 C3 -2.436 -0.930 -1.053 ETKDGv3 24
CQ5 C2 -2.350 1.367 -0.167 ETKDGv3 25
CQ5 C1 -4.015 -0.185 0.632 ETKDGv3 26
CQ5 N2 -5.138 -0.355 1.517 ETKDGv3 27
CQ5 C6 -5.876 -1.602 1.723 ETKDGv3 28
CQ5 C7 -6.930 -1.864 0.622 ETKDGv3 29
CQ5 N3 -7.869 -0.755 0.325 ETKDGv3 30
CQ5 C11 -7.358 0.282 -0.582 ETKDGv3 31
CQ5 C10 -7.699 1.632 0.030 ETKDGv3 32
CQ5 C9 -8.788 1.333 1.039 ETKDGv3 33
CQ5 C8 -8.515 -0.096 1.467 ETKDGv3 34
CQ5 H1 -4.041 -2.151 -0.175 ETKDGv3 35
CQ5 H2 5.897 0.233 -1.599 ETKDGv3 36
CQ5 H3 6.681 -1.360 -1.467 ETKDGv3 37
CQ5 H4 4.851 -0.190 0.730 ETKDGv3 38
CQ5 H5 6.010 -1.846 2.211 ETKDGv3 39
CQ5 H6 5.056 -2.613 0.897 ETKDGv3 40
CQ5 H7 6.853 -2.533 0.768 ETKDGv3 41
CQ5 H8 8.517 -0.886 0.112 ETKDGv3 42
CQ5 H9 10.328 0.721 0.859 ETKDGv3 43
CQ5 H10 9.744 2.787 1.986 ETKDGv3 44
CQ5 H11 7.294 3.351 2.428 ETKDGv3 45
CQ5 H12 5.552 1.836 1.731 ETKDGv3 46
CQ5 H13 1.577 -1.647 -2.482 ETKDGv3 47
CQ5 H14 2.212 -2.497 -1.025 ETKDGv3 48
CQ5 H15 1.528 -0.656 0.431 ETKDGv3 49
CQ5 H16 0.143 -1.356 -0.415 ETKDGv3 50
CQ5 H17 3.911 1.057 -2.532 ETKDGv3 51
CQ5 H18 3.548 1.203 -0.773 ETKDGv3 52
CQ5 H19 1.796 2.323 -2.116 ETKDGv3 53
CQ5 H20 1.606 0.864 -3.127 ETKDGv3 54
CQ5 H21 1.472 1.658 0.408 ETKDGv3 55
CQ5 H22 -0.810 1.672 -2.347 ETKDGv3 56
CQ5 H23 -0.582 -0.047 -2.732 ETKDGv3 57
CQ5 H24 -1.928 2.363 -0.152 ETKDGv3 58
CQ5 H25 -5.390 0.454 2.128 ETKDGv3 59
CQ5 H26 -5.169 -2.457 1.775 ETKDGv3 60
CQ5 H27 -6.365 -1.585 2.719 ETKDGv3 61
CQ5 H28 -7.529 -2.746 0.934 ETKDGv3 62
CQ5 H29 -6.416 -2.171 -0.314 ETKDGv3 63
CQ5 H31 -6.269 0.200 -0.774 ETKDGv3 64
CQ5 H32 -7.879 0.179 -1.558 ETKDGv3 65
CQ5 H33 -8.045 2.357 -0.738 ETKDGv3 66
CQ5 H34 -6.808 2.043 0.553 ETKDGv3 67
CQ5 H35 -8.755 2.037 1.899 ETKDGv3 68
CQ5 H36 -9.783 1.393 0.545 ETKDGv3 69
CQ5 H37 -7.872 -0.064 2.367 ETKDGv3 70
CQ5 H38 -9.463 -0.618 1.720 ETKDGv3 71
#