data_CP
#
_chem_comp.id CP
_chem_comp.name "PHOSPHORIC ACID MONO(FORMAMIDE)ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C H4 N O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-08-09
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 141.020
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1C9Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CP N N N 0 1 N N N N N N -2.005 1.802 -24.467 -0.705 0.094 2.830 N CP 1
CP C C C 0 1 N N N N N N -2.056 1.183 -23.285 -0.080 0.004 1.640 C CP 2
CP O O O 0 1 N N N N N N -1.420 0.134 -23.201 1.125 -0.139 1.596 O CP 3
CP O4P O4P O 0 1 N N N N N N -2.838 1.765 -22.226 -0.791 0.073 0.499 O4P CP 4
CP P P P 0 1 N N N N N N -2.776 1.172 -20.735 -0.044 -0.034 -0.922 P CP 5
CP O1P O1P O 0 1 N N N N N N -3.969 1.863 -19.990 0.654 -1.335 -1.015 O1P CP 6
CP O2P O2P O 0 1 N N N N N N -2.919 -0.420 -20.770 -1.127 0.078 -2.108 O2P CP 7
CP O3P O3P O 0 1 N N N N N N -1.385 1.577 -20.065 1.026 1.160 -1.058 O3P CP 8
CP HN1 1HN H 0 1 N N N N N N -1.450 1.389 -25.217 -1.667 0.213 2.865 HN1 CP 9
CP HN2 2HN H 0 1 N N N N N N -2.532 2.672 -24.536 -0.193 0.044 3.652 HN2 CP 10
CP HOP2 2HOP H 0 0 N N N N N N -2.882 -0.770 -19.887 -0.639 0.009 -2.940 HOP2 CP 11
CP HOP3 3HOP H 0 0 N N N N N N -1.348 1.226 -19.182 0.531 1.988 -0.993 HOP3 CP 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CP N C SING N N 1
CP N HN1 SING N N 2
CP N HN2 SING N N 3
CP C O DOUB N N 4
CP C O4P SING N N 5
CP O4P P SING N N 6
CP P O1P DOUB N N 7
CP P O2P SING N N 8
CP P O3P SING N N 9
CP O2P HOP2 SING N N 10
CP O3P HOP3 SING N N 11
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CP SMILES_CANONICAL CACTVS 3.341 NC(=O)O[P](O)(O)=O
CP SMILES CACTVS 3.341 NC(=O)O[P](O)(O)=O
CP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(=O)(N)OP(=O)(O)O
CP SMILES "OpenEye OEToolkits" 1.5.0 C(=O)(N)OP(=O)(O)O
CP InChI InChI 1.03 InChI=1S/CH4NO5P/c2-1(3)7-8(4,5)6/h(H2,2,3)(H2,4,5,6)
CP InChIKey InChI 1.03 FFQKYPRQEYGKAF-UHFFFAOYSA-N
#
_pdbx_chem_comp_identifier.comp_id CP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.5.0
_pdbx_chem_comp_identifier.identifier "phosphono carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CP 'Create component' 1999-08-09 RCSB
CP 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CP N N 7.702 -1.802 1
CP C C 7.702 -0.302 2
CP O O 9.002 0.448 3
CP O4P O 6.404 0.448 4
CP P P 5.104 -0.302 5
CP O1P O 3.805 -1.052 6
CP O2P O 4.354 0.997 7
CP O3P O 5.854 -1.601 8
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CP N C SINGLE NONE 1
CP C O DOUBLE NONE 2
CP C O4P SINGLE NONE 3
CP O4P P SINGLE NONE 4
CP P O1P DOUBLE NONE 5
CP P O2P SINGLE NONE 6
CP P O3P SINGLE NONE 7
#
_pdbe_chem_comp_substructure.comp_id CP
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CP O4P F1 1
CP P F1 1
CP O1P F1 1
CP O2P F1 1
CP O3P F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CP
_pdbe_chem_comp_rdkit_properties.exactmw 140.983
_pdbe_chem_comp_rdkit_properties.amw 141.019
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 8
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 50.402
_pdbe_chem_comp_rdkit_properties.tpsa 109.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.826
_pdbe_chem_comp_rdkit_properties.CrippenMR 22.712
_pdbe_chem_comp_rdkit_properties.chi0v 4.330
_pdbe_chem_comp_rdkit_properties.chi1v 2.823
_pdbe_chem_comp_rdkit_properties.chi2v 0.570
_pdbe_chem_comp_rdkit_properties.chi3v 0.570
_pdbe_chem_comp_rdkit_properties.chi4v 0.287
_pdbe_chem_comp_rdkit_properties.chi0n 7.436
_pdbe_chem_comp_rdkit_properties.chi1n 3.073
_pdbe_chem_comp_rdkit_properties.chi2n 0.190
_pdbe_chem_comp_rdkit_properties.chi3n 0.190
_pdbe_chem_comp_rdkit_properties.chi4n 0.096
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.580
_pdbe_chem_comp_rdkit_properties.kappa1 2.817
_pdbe_chem_comp_rdkit_properties.kappa2 2.125
_pdbe_chem_comp_rdkit_properties.kappa3 5.420
_pdbe_chem_comp_rdkit_properties.Phi 0.748
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CP UniChem 'KEGG LIGAND' C00169
CP UniChem ChEBI 17672
CP UniChem ZINC ZINC000008383183
CP UniChem fdasrs GC5KZW01Q3
CP UniChem SureChEMBL SCHEMBL50374
CP UniChem HMDB HMDB0001096
CP UniChem 'PubChem TPHARMA' 15219090
CP UniChem NMRShiftDB 60020905
CP UniChem BindingDb 50162819
CP UniChem MetaboLights MTBLC17672
CP UniChem BRENDA 440
CP UniChem BRENDA 47621
CP UniChem BRENDA 5136
CP UniChem Nikkaji J39.574I
CP UniChem PubChem 278
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CP N 2.557 -0.210 -0.345 ETKDGv3 1
CP C 1.294 -0.050 0.295 ETKDGv3 2
CP O 1.241 0.429 1.460 ETKDGv3 3
CP O4P 0.130 -0.427 -0.378 ETKDGv3 4
CP P -1.432 -0.269 0.323 ETKDGv3 5
CP O1P -1.515 -1.119 1.571 ETKDGv3 6
CP O2P -2.601 -0.788 -0.784 ETKDGv3 7
CP O3P -1.715 1.350 0.727 ETKDGv3 8
CP HN1 3.437 0.067 0.143 ETKDGv3 9
CP HN2 2.610 -0.605 -1.310 ETKDGv3 10
CP HOP2 -2.451 -0.229 -1.588 ETKDGv3 11
CP HOP3 -1.555 1.850 -0.113 ETKDGv3 12
#