data_CM4
#
_chem_comp.id CM4
_chem_comp.name (2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PYRROLIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H31 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-01-19
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 445.550
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CM4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1YIM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CM4 C1 C1 C 0 1 N N R N N N 31.346 -0.610 28.401 0.193 1.462 2.084 C1 CM4 1
CM4 C2 C2 C 0 1 N N R N N N 31.534 -2.030 27.862 1.138 0.445 1.430 C2 CM4 2
CM4 O3 O3 O 0 1 N N N N N N 30.301 -2.737 28.114 0.879 -0.840 1.972 O3 CM4 3
CM4 C4 C4 C 0 1 Y N N N N N 29.100 -2.234 27.760 1.080 -0.843 3.312 C4 CM4 4
CM4 C5 C5 C 0 1 Y N N N N N 28.075 -3.154 27.558 1.401 -2.068 3.900 C5 CM4 5
CM4 C6 C6 C 0 1 Y N N N N N 26.804 -2.716 27.184 1.610 -2.162 5.259 C6 CM4 6
CM4 C7 C7 C 0 1 Y N N N N N 26.541 -1.356 27.029 1.501 -1.031 6.055 C7 CM4 7
CM4 O8 O8 O 0 1 N N N N N N 25.299 -0.988 26.628 1.702 -1.119 7.398 O8 CM4 8
CM4 C9 C9 C 0 1 Y N N N N N 27.570 -0.428 27.248 1.188 0.185 5.476 C9 CM4 9
CM4 C10 C10 C 0 1 Y N N N N N 28.879 -0.858 27.613 0.980 0.280 4.109 C10 CM4 10
CM4 C11 C11 C 0 1 N N S N N N 30.047 0.110 27.848 0.654 1.639 3.535 C11 CM4 11
CM4 C12 C12 C 0 1 N N N N N N 29.597 1.318 28.667 1.901 2.524 3.574 C12 CM4 12
CM4 C13 C13 C 0 1 Y N N N N N 32.667 0.154 28.235 -1.220 0.943 2.053 C13 CM4 13
CM4 C14 C14 C 0 1 Y N N N N N 32.885 1.011 27.146 -2.087 1.358 1.059 C14 CM4 14
CM4 C15 C15 C 0 1 Y N N N N N 34.126 1.673 27.085 -3.382 0.879 1.026 C15 CM4 15
CM4 C16 C16 C 0 1 Y N N N N N 35.125 1.478 28.053 -3.816 -0.010 1.997 C16 CM4 16
CM4 O17 O17 O 0 1 N N N N N N 36.307 2.147 27.956 -5.092 -0.478 1.970 O17 CM4 17
CM4 C18 C18 C 0 1 Y N N N N N 34.906 0.609 29.123 -2.947 -0.421 2.997 C18 CM4 18
CM4 C19 C19 C 0 1 Y N N N N N 33.644 -0.011 29.231 -1.651 0.056 3.023 C19 CM4 19
CM4 C20 C20 C 0 1 Y N N N N N 31.927 -2.223 26.404 0.902 0.421 -0.058 C20 CM4 20
CM4 C21 C21 C 0 1 Y N N N N N 32.898 -3.182 26.117 -0.025 -0.450 -0.596 C21 CM4 21
CM4 C22 C22 C 0 1 Y N N N N N 33.279 -3.438 24.783 -0.247 -0.470 -1.959 C22 CM4 22
CM4 C23 C23 C 0 1 Y N N N N N 32.769 -2.667 23.749 0.468 0.379 -2.790 C23 CM4 23
CM4 C24 C24 C 0 1 Y N N N N N 31.790 -1.710 23.995 1.403 1.249 -2.248 C24 CM4 24
CM4 C25 C25 C 0 1 Y N N N N N 31.390 -1.518 25.325 1.618 1.268 -0.884 C25 CM4 25
CM4 O26 O26 O 0 1 N N N N N N 33.106 -2.918 22.471 0.255 0.358 -4.132 O26 CM4 26
CM4 C27 C27 C 0 1 N N N N N N 33.712 -4.159 22.109 -0.749 -0.627 -4.375 C27 CM4 27
CM4 C28 C28 C 0 1 N N N N N N 34.020 -4.188 20.612 -1.038 -0.702 -5.876 C28 CM4 28
CM4 N29 N29 N 0 1 N N N N N N 32.797 -4.287 19.805 0.190 -1.068 -6.593 N29 CM4 29
CM4 C30 C30 C 0 1 N N N N N N 33.208 -4.332 18.391 1.150 0.035 -6.382 C30 CM4 30
CM4 C31 C31 C 0 1 N N N N N N 32.024 -3.801 17.581 1.832 0.234 -7.758 C31 CM4 31
CM4 C32 C32 C 0 1 N N N N N N 31.096 -3.158 18.621 0.650 -0.013 -8.732 C32 CM4 32
CM4 C33 C33 C 0 1 N N N N N N 31.920 -3.110 19.915 -0.155 -1.123 -8.025 C33 CM4 33
CM4 H1 H1 H 0 1 N N N N N N 31.125 -0.643 29.493 0.252 2.415 1.557 H1 CM4 34
CM4 H2 H2 H 0 1 N N N N N N 32.431 -2.418 28.400 2.172 0.724 1.632 H2 CM4 35
CM4 H5 H5 H 0 1 N N N N N N 28.270 -4.231 27.694 1.487 -2.951 3.284 H5 CM4 36
CM4 H6 H6 H 0 1 N N N N N N 26.000 -3.451 27.009 1.857 -3.115 5.703 H6 CM4 37
CM4 HO8 HO8 H 0 1 N N N N N N 25.120 -0.061 26.522 2.644 -0.963 7.550 HO8 CM4 38
CM4 H9 H9 H 0 1 N N N N N N 27.349 0.646 27.133 1.105 1.068 6.093 H9 CM4 39
CM4 H11 H11 H 0 1 N N N N N N 30.366 0.508 26.857 -0.141 2.102 4.117 H11 CM4 40
CM4 H121 1H12 H 0 0 N N N N N N 30.432 2.050 28.772 2.227 2.648 4.607 H121 CM4 41
CM4 H122 2H12 H 0 0 N N N N N N 28.683 1.825 28.278 2.697 2.056 2.995 H122 CM4 42
CM4 H123 3H12 H 0 0 N N N N N N 29.458 1.033 29.736 1.667 3.500 3.147 H123 CM4 43
CM4 H14 H14 H 0 1 N N N N N N 32.114 1.158 26.371 -1.748 2.051 0.303 H14 CM4 44
CM4 H15 H15 H 0 1 N N N N N N 34.322 2.368 26.251 -4.057 1.200 0.246 H15 CM4 45
CM4 H17 H17 H 0 1 N N N N N N 36.983 2.015 28.611 -5.626 0.134 2.492 H17 CM4 46
CM4 H18 H18 H 0 1 N N N N N N 35.705 0.418 29.860 -3.282 -1.114 3.754 H18 CM4 47
CM4 H19 H19 H 0 1 N N N N N N 33.417 -0.636 30.111 -0.973 -0.262 3.801 H19 CM4 48
CM4 H21 H21 H 0 1 N N N N N N 33.365 -3.739 26.946 -0.583 -1.111 0.050 H21 CM4 49
CM4 H22 H22 H 0 1 N N N N N N 33.985 -4.252 24.545 -0.976 -1.148 -2.378 H22 CM4 50
CM4 H24 H24 H 0 1 N N N N N N 31.349 -1.127 23.169 1.962 1.911 -2.893 H24 CM4 51
CM4 H25 H25 H 0 1 N N N N N N 30.608 -0.769 25.535 2.345 1.946 -0.461 H25 CM4 52
CM4 H271 1H27 H 0 0 N N N N N N 33.091 -5.030 22.421 -0.399 -1.598 -4.023 H271 CM4 53
CM4 H272 2H27 H 0 0 N N N N N N 34.618 -4.372 22.723 -1.661 -0.355 -3.843 H272 CM4 54
CM4 H281 1H28 H 0 0 N N N N N N 34.739 -5.003 20.361 -1.805 -1.454 -6.061 H281 CM4 55
CM4 H282 2H28 H 0 0 N N N N N N 34.637 -3.311 20.308 -1.388 0.268 -6.227 H282 CM4 56
CM4 H301 1H30 H 0 0 N N N N N N 33.552 -5.340 18.062 0.626 0.942 -6.083 H301 CM4 57
CM4 H302 2H30 H 0 0 N N N N N N 34.161 -3.789 18.190 1.889 -0.242 -5.630 H302 CM4 58
CM4 H311 1H31 H 0 0 N N N N N N 31.528 -4.571 16.945 2.625 -0.497 -7.911 H311 CM4 59
CM4 H312 2H31 H 0 0 N N N N N N 32.314 -3.118 16.749 2.215 1.250 -7.861 H312 CM4 60
CM4 H321 1H32 H 0 0 N N N N N N 30.114 -3.675 18.730 1.014 -0.358 -9.700 H321 CM4 61
CM4 H322 2H32 H 0 0 N N N N N N 30.686 -2.169 18.310 0.048 0.887 -8.845 H322 CM4 62
CM4 H331 1H33 H 0 0 N N N N N N 32.457 -2.148 20.086 0.114 -2.096 -8.435 H331 CM4 63
CM4 H332 2H33 H 0 0 N N N N N N 31.312 -3.072 20.849 -1.222 -0.946 -8.156 H332 CM4 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CM4 C1 C2 SING N N 1
CM4 C1 C11 SING N N 2
CM4 C1 C13 SING N N 3
CM4 C1 H1 SING N N 4
CM4 C2 O3 SING N N 5
CM4 C2 C20 SING N N 6
CM4 C2 H2 SING N N 7
CM4 O3 C4 SING N N 8
CM4 C4 C5 DOUB Y N 9
CM4 C4 C10 SING Y N 10
CM4 C5 C6 SING Y N 11
CM4 C5 H5 SING N N 12
CM4 C6 C7 DOUB Y N 13
CM4 C6 H6 SING N N 14
CM4 C7 O8 SING N N 15
CM4 C7 C9 SING Y N 16
CM4 O8 HO8 SING N N 17
CM4 C9 C10 DOUB Y N 18
CM4 C9 H9 SING N N 19
CM4 C10 C11 SING N N 20
CM4 C11 C12 SING N N 21
CM4 C11 H11 SING N N 22
CM4 C12 H121 SING N N 23
CM4 C12 H122 SING N N 24
CM4 C12 H123 SING N N 25
CM4 C13 C14 DOUB Y N 26
CM4 C13 C19 SING Y N 27
CM4 C14 C15 SING Y N 28
CM4 C14 H14 SING N N 29
CM4 C15 C16 DOUB Y N 30
CM4 C15 H15 SING N N 31
CM4 C16 O17 SING N N 32
CM4 C16 C18 SING Y N 33
CM4 O17 H17 SING N N 34
CM4 C18 C19 DOUB Y N 35
CM4 C18 H18 SING N N 36
CM4 C19 H19 SING N N 37
CM4 C20 C21 DOUB Y N 38
CM4 C20 C25 SING Y N 39
CM4 C21 C22 SING Y N 40
CM4 C21 H21 SING N N 41
CM4 C22 C23 DOUB Y N 42
CM4 C22 H22 SING N N 43
CM4 C23 C24 SING Y N 44
CM4 C23 O26 SING N N 45
CM4 C24 C25 DOUB Y N 46
CM4 C24 H24 SING N N 47
CM4 C25 H25 SING N N 48
CM4 O26 C27 SING N N 49
CM4 C27 C28 SING N N 50
CM4 C27 H271 SING N N 51
CM4 C27 H272 SING N N 52
CM4 C28 N29 SING N N 53
CM4 C28 H281 SING N N 54
CM4 C28 H282 SING N N 55
CM4 N29 C30 SING N N 56
CM4 N29 C33 SING N N 57
CM4 C30 C31 SING N N 58
CM4 C30 H301 SING N N 59
CM4 C30 H302 SING N N 60
CM4 C31 C32 SING N N 61
CM4 C31 H311 SING N N 62
CM4 C31 H312 SING N N 63
CM4 C32 C33 SING N N 64
CM4 C32 H321 SING N N 65
CM4 C32 H322 SING N N 66
CM4 C33 H331 SING N N 67
CM4 C33 H332 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CM4 SMILES ACDLabs 10.04 Oc1ccc(cc1)C4C(c5c(OC4c3ccc(OCCN2CCCC2)cc3)ccc(O)c5)C
CM4 SMILES_CANONICAL CACTVS 3.341 C[C@H]1[C@@H]([C@@H](Oc2ccc(O)cc12)c3ccc(OCCN4CCCC4)cc3)c5ccc(O)cc5
CM4 SMILES CACTVS 3.341 C[CH]1[CH]([CH](Oc2ccc(O)cc12)c3ccc(OCCN4CCCC4)cc3)c5ccc(O)cc5
CM4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]1c2cc(ccc2O[C@H]([C@H]1c3ccc(cc3)O)c4ccc(cc4)OCCN5CCCC5)O
CM4 SMILES "OpenEye OEToolkits" 1.5.0 CC1c2cc(ccc2OC(C1c3ccc(cc3)O)c4ccc(cc4)OCCN5CCCC5)O
CM4 InChI InChI 1.03 InChI=1S/C28H31NO4/c1-19-25-18-23(31)10-13-26(25)33-28(27(19)20-4-8-22(30)9-5-20)21-6-11-24(12-7-21)32-17-16-29-14-2-3-15-29/h4-13,18-19,27-28,30-31H,2-3,14-17H2,1H3/t19-,27-,28+/m1/s1
CM4 InChIKey InChI 1.03 XPVKGTWRXBSJKO-LHXLBICKSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CM4 "SYSTEMATIC NAME" ACDLabs 10.04 (2R,3R,4S)-3-(4-hydroxyphenyl)-4-methyl-2-[4-(2-pyrrolidin-1-ylethoxy)phenyl]-3,4-dihydro-2H-chromen-6-ol
CM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R,4S)-3-(4-hydroxyphenyl)-4-methyl-2-[4-(2-pyrrolidin-1-ylethoxy)phenyl]chroman-6-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CM4 'Create component' 2005-01-19 RCSB
CM4 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CM4
_pdbe_chem_comp_drugbank_details.drugbank_id DB07567
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PYRROLIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id CM4
_pdbe_chem_comp_synonyms.name '(2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-METHYL-2-[4-(2-PYRROLIDIN-1-YLETHOXY)PHENYL]CHROMAN-6-OL'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CM4
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07567
_pdbe_chem_comp_drugbank_classification.parent 6-hydroxyflavonoids
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Flavonoids
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 6-hydroxyflavonoids. These are flavonoids that bear one hydroxyl group at the C-6 position of the flavonoid skeleton.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CM4
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07567
_pdbe_chem_comp_drugbank_targets.name 'Estrogen receptor'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P03372
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CM4 C1 C 10.402 3.314 1
CM4 C2 C 10.402 1.814 2
CM4 O3 O 9.102 1.064 3
CM4 C4 C 7.803 1.814 4
CM4 C5 C 6.463 1.012 5
CM4 C6 C 5.103 1.783 6
CM4 C7 C 5.103 3.345 7
CM4 O8 O 3.807 4.100 8
CM4 C9 C 6.463 4.116 9
CM4 C10 C 7.803 3.314 10
CM4 C11 C 9.102 4.064 11
CM4 C12 C 9.102 5.564 12
CM4 C13 C 11.700 4.064 13
CM4 C14 C 12.999 3.314 14
CM4 C15 C 14.298 4.064 15
CM4 C16 C 14.298 5.564 16
CM4 O17 O 15.598 6.314 17
CM4 C18 C 12.999 6.314 18
CM4 C19 C 11.700 5.564 19
CM4 C20 C 11.700 1.064 20
CM4 C21 C 11.700 -0.436 21
CM4 C22 C 12.999 -1.186 22
CM4 C23 C 14.298 -0.436 23
CM4 C24 C 14.298 1.064 24
CM4 C25 C 12.999 1.814 25
CM4 O26 O 15.598 -1.186 26
CM4 C27 C 15.598 -2.686 27
CM4 C28 C 16.897 -3.436 28
CM4 N29 N 16.897 -4.936 29
CM4 C30 C 15.683 -5.818 30
CM4 C31 C 16.147 -7.244 31
CM4 C32 C 17.647 -7.244 32
CM4 C33 C 18.110 -5.818 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CM4 C1 C2 SINGLE NONE 1
CM4 C1 C11 SINGLE NONE 2
CM4 C1 C13 SINGLE BEGINDASH 3
CM4 C2 O3 SINGLE NONE 4
CM4 C2 C20 SINGLE BEGINDASH 5
CM4 O3 C4 SINGLE NONE 6
CM4 C4 C5 DOUBLE NONE 7
CM4 C4 C10 SINGLE NONE 8
CM4 C5 C6 SINGLE NONE 9
CM4 C6 C7 DOUBLE NONE 10
CM4 C7 O8 SINGLE NONE 11
CM4 C7 C9 SINGLE NONE 12
CM4 C9 C10 DOUBLE NONE 13
CM4 C10 C11 SINGLE NONE 14
CM4 C11 C12 SINGLE BEGINWEDGE 15
CM4 C13 C14 DOUBLE NONE 16
CM4 C13 C19 SINGLE NONE 17
CM4 C14 C15 SINGLE NONE 18
CM4 C15 C16 DOUBLE NONE 19
CM4 C16 O17 SINGLE NONE 20
CM4 C16 C18 SINGLE NONE 21
CM4 C18 C19 DOUBLE NONE 22
CM4 C20 C21 DOUBLE NONE 23
CM4 C20 C25 SINGLE NONE 24
CM4 C21 C22 SINGLE NONE 25
CM4 C22 C23 DOUBLE NONE 26
CM4 C23 C24 SINGLE NONE 27
CM4 C23 O26 SINGLE NONE 28
CM4 C24 C25 DOUBLE NONE 29
CM4 O26 C27 SINGLE NONE 30
CM4 C27 C28 SINGLE NONE 31
CM4 C28 N29 SINGLE NONE 32
CM4 N29 C30 SINGLE NONE 33
CM4 N29 C33 SINGLE NONE 34
CM4 C30 C31 SINGLE NONE 35
CM4 C31 C32 SINGLE NONE 36
CM4 C32 C33 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CM4 MurckoScaffold S1 scaffold 'c1ccc([C@H]2Cc3ccccc3O[C@H]2c2ccc(OCCN3CCCC3)cc2)cc1' InChI=1S/C27H29NO2/c1-2-8-21(9-3-1)25-20-23-10-4-5-11-26(23)30-27(25)22-12-14-24(15-13-22)29-19-18-28-16-6-7-17-28/h1-5,8-15,25,27H,6-7,16-20H2/t25-,27+/m1/s1 AMSFCOQDMBAQPY-VPUSJEBWSA-N
CM4 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CM4 tocol F2 fragment c1ccc2c(c1)CCCO2 InChI=1S/C9H10O/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6H,3,5,7H2 VZWXIQHBIQLMPN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CM4 C1 S1 1
CM4 C2 S1 1
CM4 O3 S1 1
CM4 C4 S1 1
CM4 C5 S1 1
CM4 C6 S1 1
CM4 C7 S1 1
CM4 C9 S1 1
CM4 C10 S1 1
CM4 C11 S1 1
CM4 C13 S1 1
CM4 C14 S1 1
CM4 C15 S1 1
CM4 C16 S1 1
CM4 C18 S1 1
CM4 C19 S1 1
CM4 C20 S1 1
CM4 C21 S1 1
CM4 C22 S1 1
CM4 C23 S1 1
CM4 C24 S1 1
CM4 C25 S1 1
CM4 O26 S1 1
CM4 C27 S1 1
CM4 C28 S1 1
CM4 N29 S1 1
CM4 C30 S1 1
CM4 C31 S1 1
CM4 C32 S1 1
CM4 C33 S1 1
CM4 C4 F1 1
CM4 C5 F1 1
CM4 C6 F1 1
CM4 C7 F1 1
CM4 C9 F1 1
CM4 C10 F1 1
CM4 C13 F1 2
CM4 C14 F1 2
CM4 C15 F1 2
CM4 C16 F1 2
CM4 C18 F1 2
CM4 C19 F1 2
CM4 C20 F1 3
CM4 C21 F1 3
CM4 C22 F1 3
CM4 C23 F1 3
CM4 C24 F1 3
CM4 C25 F1 3
CM4 C7 F2 1
CM4 C6 F2 1
CM4 C5 F2 1
CM4 C4 F2 1
CM4 C10 F2 1
CM4 C9 F2 1
CM4 C11 F2 1
CM4 C1 F2 1
CM4 C2 F2 1
CM4 O3 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CM4
_pdbe_chem_comp_rdkit_properties.exactmw 445.225
_pdbe_chem_comp_rdkit_properties.amw 445.559
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 238.486
_pdbe_chem_comp_rdkit_properties.tpsa 62.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.580
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.112
_pdbe_chem_comp_rdkit_properties.chi0v 16.080
_pdbe_chem_comp_rdkit_properties.chi1v 8.896
_pdbe_chem_comp_rdkit_properties.chi2v 4.076
_pdbe_chem_comp_rdkit_properties.chi3v 4.076
_pdbe_chem_comp_rdkit_properties.chi4v 2.699
_pdbe_chem_comp_rdkit_properties.chi0n 47.080
_pdbe_chem_comp_rdkit_properties.chi1n 24.212
_pdbe_chem_comp_rdkit_properties.chi2n 4.076
_pdbe_chem_comp_rdkit_properties.chi3n 4.076
_pdbe_chem_comp_rdkit_properties.chi4n 2.699
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.180
_pdbe_chem_comp_rdkit_properties.kappa1 5.895
_pdbe_chem_comp_rdkit_properties.kappa2 9.359
_pdbe_chem_comp_rdkit_properties.kappa3 4.643
_pdbe_chem_comp_rdkit_properties.Phi 1.672
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CM4 UniChem DrugBank DB07567
CM4 UniChem ChEBI 41593
CM4 UniChem ZINC ZINC000016051697
CM4 UniChem 'PubChem TPHARMA' 16356944
CM4 UniChem PubChem 4369568
CM4 UniChem BindingDb 50162803
CM4 UniChem 'Probes And Drugs' PD005067
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CM4 C1 -2.943 -0.097 1.117 ETKDGv3 1
CM4 C2 -1.623 -0.908 1.248 ETKDGv3 2
CM4 O3 -1.629 -2.057 0.402 ETKDGv3 3
CM4 C4 -2.764 -2.850 0.241 ETKDGv3 4
CM4 C5 -2.664 -4.041 -0.361 ETKDGv3 5
CM4 C6 -3.868 -4.867 -0.577 ETKDGv3 6
CM4 C7 -5.068 -4.423 -0.182 ETKDGv3 7
CM4 O8 -6.199 -5.207 -0.394 ETKDGv3 8
CM4 C9 -5.185 -3.101 0.476 ETKDGv3 9
CM4 C10 -4.091 -2.346 0.685 ETKDGv3 10
CM4 C11 -4.199 -0.992 1.361 ETKDGv3 11
CM4 C12 -4.455 -1.193 2.865 ETKDGv3 12
CM4 C13 -3.026 0.686 -0.195 ETKDGv3 13
CM4 C14 -2.737 2.004 -0.203 ETKDGv3 14
CM4 C15 -2.742 2.773 -1.464 ETKDGv3 15
CM4 C16 -3.025 2.164 -2.624 ETKDGv3 16
CM4 O17 -3.029 2.874 -3.823 ETKDGv3 17
CM4 C18 -3.337 0.722 -2.634 ETKDGv3 18
CM4 C19 -3.338 0.022 -1.493 ETKDGv3 19
CM4 C20 -0.403 -0.057 0.968 ETKDGv3 20
CM4 C21 0.129 0.704 1.940 ETKDGv3 21
CM4 C22 1.276 1.589 1.654 ETKDGv3 22
CM4 C23 1.793 1.661 0.420 ETKDGv3 23
CM4 C24 1.190 0.842 -0.666 ETKDGv3 24
CM4 C25 0.158 0.031 -0.405 ETKDGv3 25
CM4 O26 2.882 2.519 0.203 ETKDGv3 26
CM4 C27 3.640 2.598 -1.005 ETKDGv3 27
CM4 C28 4.555 1.378 -1.163 ETKDGv3 28
CM4 N29 5.362 1.161 0.055 ETKDGv3 29
CM4 C30 6.042 -0.136 0.021 ETKDGv3 30
CM4 C31 7.254 -0.012 0.926 ETKDGv3 31
CM4 C32 7.554 1.477 0.991 ETKDGv3 32
CM4 C33 6.431 2.153 0.216 ETKDGv3 33
CM4 H1 -2.924 0.653 1.941 ETKDGv3 34
CM4 H2 -1.551 -1.279 2.294 ETKDGv3 35
CM4 H5 -1.701 -4.402 -0.699 ETKDGv3 36
CM4 H6 -3.775 -5.832 -1.060 ETKDGv3 37
CM4 HO8 -7.118 -4.891 -0.104 ETKDGv3 38
CM4 H9 -6.161 -2.749 0.786 ETKDGv3 39
CM4 H11 -5.088 -0.460 0.952 ETKDGv3 40
CM4 H121 -4.568 -0.212 3.373 ETKDGv3 41
CM4 H122 -5.395 -1.762 3.024 ETKDGv3 42
CM4 H123 -3.622 -1.752 3.340 ETKDGv3 43
CM4 H14 -2.476 2.522 0.711 ETKDGv3 44
CM4 H15 -2.508 3.830 -1.442 ETKDGv3 45
CM4 H17 -2.819 3.865 -3.857 ETKDGv3 46
CM4 H18 -3.564 0.229 -3.570 ETKDGv3 47
CM4 H19 -3.569 -1.029 -1.541 ETKDGv3 48
CM4 H21 -0.282 0.688 2.942 ETKDGv3 49
CM4 H22 1.697 2.184 2.455 ETKDGv3 50
CM4 H24 1.563 0.897 -1.678 ETKDGv3 51
CM4 H25 -0.278 -0.547 -1.210 ETKDGv3 52
CM4 H271 4.263 3.516 -0.967 ETKDGv3 53
CM4 H272 2.968 2.702 -1.883 ETKDGv3 54
CM4 H281 5.201 1.511 -2.060 ETKDGv3 55
CM4 H282 3.919 0.485 -1.349 ETKDGv3 56
CM4 H301 5.360 -0.935 0.384 ETKDGv3 57
CM4 H302 6.384 -0.387 -1.010 ETKDGv3 58
CM4 H311 8.118 -0.582 0.519 ETKDGv3 59
CM4 H312 7.009 -0.395 1.942 ETKDGv3 60
CM4 H321 8.540 1.703 0.530 ETKDGv3 61
CM4 H322 7.558 1.822 2.048 ETKDGv3 62
CM4 H331 6.049 3.032 0.778 ETKDGv3 63
CM4 H332 6.826 2.497 -0.768 ETKDGv3 64
#