data_CJF
#
_chem_comp.id CJF
_chem_comp.name N4-cyclopropyl-6-morpholin-4-yl-pyrimidine-2,4-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H17 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-24
_chem_comp.pdbx_modified_date 2020-10-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 235.286
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CJF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6JVQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CJF N01 N1 N 0 1 N N N N N N 26.711 10.537 -13.716 0.299 3.827 -0.314 N01 CJF 1
CJF C02 C1 C 0 1 Y N N N N N 27.333 9.687 -14.717 0.426 2.461 -0.138 C02 CJF 2
CJF N03 N2 N 0 1 Y N N N N N 28.661 9.588 -14.689 -0.663 1.728 0.035 N03 CJF 3
CJF C04 C2 C 0 1 Y N N N N N 29.275 8.819 -15.582 -0.579 0.411 0.207 C04 CJF 4
CJF C05 C3 C 0 1 Y N N N N N 28.540 8.119 -16.554 0.675 -0.194 0.205 C05 CJF 5
CJF C06 C4 C 0 1 Y N N N N N 27.141 8.262 -16.542 1.797 0.609 0.021 C06 CJF 6
CJF N07 N3 N 0 1 N N N N N N 26.311 7.568 -17.538 3.065 0.050 0.010 N07 CJF 7
CJF C08 C5 C 0 1 N N N N N N 26.865 6.513 -18.423 3.232 -1.393 0.194 C08 CJF 8
CJF C09 C6 C 0 1 N N N N N N 27.682 6.925 -19.662 4.570 -1.885 0.748 C09 CJF 9
CJF C10 C7 C 0 1 N N N N N N 26.227 6.478 -19.815 4.221 -2.113 -0.725 C10 CJF 10
CJF N11 N4 N 0 1 Y N N N N N 26.578 9.030 -15.610 1.635 1.919 -0.151 N11 CJF 11
CJF N12 N5 N 0 1 N N N N N N 30.744 8.700 -15.530 -1.724 -0.349 0.387 N12 CJF 12
CJF C13 C8 C 0 1 N N N N N N 31.463 7.715 -16.352 -1.811 -1.418 -0.618 C13 CJF 13
CJF C14 C9 C 0 1 N N N N N N 32.982 7.958 -16.424 -3.056 -2.267 -0.346 C14 CJF 14
CJF O15 O1 O 0 1 N N N N N N 33.580 8.289 -15.209 -4.212 -1.424 -0.351 O15 CJF 15
CJF C16 C10 C 0 1 N N N N N N 32.903 9.298 -14.516 -4.161 -0.372 0.617 C16 CJF 16
CJF C17 C11 C 0 1 N N N N N N 31.458 8.871 -14.260 -2.927 0.496 0.355 C17 CJF 17
CJF H1 H1 H 0 1 N N N N N N 25.718 10.520 -13.834 -0.581 4.237 -0.310 H1 CJF 18
CJF H2 H2 H 0 1 N N N N N N 26.944 10.202 -12.803 1.089 4.376 -0.437 H2 CJF 19
CJF H3 H3 H 0 1 N N N N N N 29.032 7.494 -17.284 0.775 -1.260 0.347 H3 CJF 20
CJF H4 H4 H 0 1 N N N N N N 25.946 8.277 -18.141 3.843 0.616 -0.119 H4 CJF 21
CJF H5 H5 H 0 1 N N N N N N 27.115 5.543 -17.968 2.334 -1.936 0.490 H5 CJF 22
CJF H6 H6 H 0 1 N N N N N N 28.497 6.280 -20.023 5.327 -1.135 0.976 H6 CJF 23
CJF H7 H7 H 0 1 N N N N N N 27.953 7.980 -19.817 4.554 -2.752 1.409 H7 CJF 24
CJF H8 H8 H 0 1 N N N N N N 25.453 7.212 -20.082 3.975 -3.129 -1.033 H8 CJF 25
CJF H9 H9 H 0 1 N N N N N N 25.996 5.512 -20.289 4.749 -1.512 -1.466 H9 CJF 26
CJF H10 H10 H 0 1 N N N N N N 31.057 7.753 -17.374 -1.881 -0.978 -1.612 H10 CJF 27
CJF H11 H11 H 0 1 N N N N N N 31.291 6.716 -15.926 -0.922 -2.046 -0.559 H11 CJF 28
CJF H12 H12 H 0 1 N N N N N N 33.458 7.040 -16.801 -3.156 -3.025 -1.122 H12 CJF 29
CJF H13 H13 H 0 1 N N N N N N 33.164 8.782 -17.130 -2.962 -2.750 0.627 H13 CJF 30
CJF H14 H14 H 0 1 N N N N N N 33.405 9.481 -13.555 -5.060 0.240 0.537 H14 CJF 31
CJF H15 H15 H 0 1 N N N N N N 32.910 10.221 -15.115 -4.099 -0.800 1.617 H15 CJF 32
CJF H16 H16 H 0 1 N N N N N N 30.953 9.643 -13.661 -2.853 1.265 1.124 H16 CJF 33
CJF H17 H17 H 0 1 N N N N N N 31.453 7.918 -13.710 -3.015 0.967 -0.624 H17 CJF 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CJF C10 C09 SING N N 1
CJF C10 C08 SING N N 2
CJF C09 C08 SING N N 3
CJF C08 N07 SING N N 4
CJF N07 C06 SING N N 5
CJF C05 C06 DOUB Y N 6
CJF C05 C04 SING Y N 7
CJF C06 N11 SING Y N 8
CJF C14 C13 SING N N 9
CJF C14 O15 SING N N 10
CJF C13 N12 SING N N 11
CJF N11 C02 DOUB Y N 12
CJF C04 N12 SING N N 13
CJF C04 N03 DOUB Y N 14
CJF N12 C17 SING N N 15
CJF O15 C16 SING N N 16
CJF C02 N03 SING Y N 17
CJF C02 N01 SING N N 18
CJF C16 C17 SING N N 19
CJF N01 H1 SING N N 20
CJF N01 H2 SING N N 21
CJF C05 H3 SING N N 22
CJF N07 H4 SING N N 23
CJF C08 H5 SING N N 24
CJF C09 H6 SING N N 25
CJF C09 H7 SING N N 26
CJF C10 H8 SING N N 27
CJF C10 H9 SING N N 28
CJF C13 H10 SING N N 29
CJF C13 H11 SING N N 30
CJF C14 H12 SING N N 31
CJF C14 H13 SING N N 32
CJF C16 H14 SING N N 33
CJF C16 H15 SING N N 34
CJF C17 H16 SING N N 35
CJF C17 H17 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CJF InChI InChI 1.03 InChI=1S/C11H17N5O/c12-11-14-9(13-8-1-2-8)7-10(15-11)16-3-5-17-6-4-16/h7-8H,1-6H2,(H3,12,13,14,15)
CJF InChIKey InChI 1.03 ODSBHVJNQBVQRW-UHFFFAOYSA-N
CJF SMILES_CANONICAL CACTVS 3.385 Nc1nc(NC2CC2)cc(n1)N3CCOCC3
CJF SMILES CACTVS 3.385 Nc1nc(NC2CC2)cc(n1)N3CCOCC3
CJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1c(nc(nc1N2CCOCC2)N)NC3CC3
CJF SMILES "OpenEye OEToolkits" 2.0.6 c1c(nc(nc1N2CCOCC2)N)NC3CC3
#
_pdbx_chem_comp_identifier.comp_id CJF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier ~{N}4-cyclopropyl-6-morpholin-4-yl-pyrimidine-2,4-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CJF 'Create component' 2019-04-24 PDBJ
CJF 'Initial release' 2020-10-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CJF N01 N 9.002 -2.350 1
CJF C02 C 7.702 -1.601 2
CJF N03 N 7.702 -0.101 3
CJF C04 C 6.404 0.649 4
CJF C05 C 5.104 -0.101 5
CJF C06 C 5.104 -1.601 6
CJF N07 N 3.805 -2.350 7
CJF C08 C 3.805 -3.850 8
CJF C09 C 4.555 -5.149 9
CJF C10 C 3.055 -5.149 10
CJF N11 N 6.404 -2.350 11
CJF N12 N 6.404 2.150 12
CJF C13 C 5.104 2.900 13
CJF C14 C 5.104 4.399 14
CJF O15 O 6.404 5.149 15
CJF C16 C 7.702 4.399 16
CJF C17 C 7.702 2.900 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CJF C10 C09 SINGLE NONE 1
CJF C10 C08 SINGLE NONE 2
CJF C09 C08 SINGLE NONE 3
CJF C08 N07 SINGLE NONE 4
CJF N07 C06 SINGLE NONE 5
CJF C05 C06 DOUBLE NONE 6
CJF C05 C04 SINGLE NONE 7
CJF C06 N11 SINGLE NONE 8
CJF C14 C13 SINGLE NONE 9
CJF C14 O15 SINGLE NONE 10
CJF C13 N12 SINGLE NONE 11
CJF N11 C02 DOUBLE NONE 12
CJF C04 N12 SINGLE NONE 13
CJF C04 N03 DOUBLE NONE 14
CJF N12 C17 SINGLE NONE 15
CJF O15 C16 SINGLE NONE 16
CJF C02 N03 SINGLE NONE 17
CJF C02 N01 SINGLE NONE 18
CJF C16 C17 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CJF MurckoScaffold S1 scaffold c1nc(NC2CC2)cc(N2CCOCC2)n1 InChI=1S/C11H16N4O/c1-2-9(1)14-10-7-11(13-8-12-10)15-3-5-16-6-4-15/h7-9H,1-6H2,(H,12,13,14) DASUIALUODDMLQ-UHFFFAOYSA-N
CJF cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
CJF pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CJF C02 S1 1
CJF N03 S1 1
CJF C04 S1 1
CJF C05 S1 1
CJF C06 S1 1
CJF N07 S1 1
CJF C08 S1 1
CJF C09 S1 1
CJF C10 S1 1
CJF N11 S1 1
CJF N12 S1 1
CJF C13 S1 1
CJF C14 S1 1
CJF O15 S1 1
CJF C16 S1 1
CJF C17 S1 1
CJF C08 F1 1
CJF C10 F1 1
CJF C09 F1 1
CJF C05 F2 1
CJF C06 F2 1
CJF N11 F2 1
CJF C02 F2 1
CJF N03 F2 1
CJF C04 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CJF
_pdbe_chem_comp_rdkit_properties.exactmw 235.143
_pdbe_chem_comp_rdkit_properties.amw 235.291
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.636
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 124.235
_pdbe_chem_comp_rdkit_properties.tpsa 76.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.672
_pdbe_chem_comp_rdkit_properties.CrippenMR 63.649
_pdbe_chem_comp_rdkit_properties.chi0v 8.144
_pdbe_chem_comp_rdkit_properties.chi1v 4.394
_pdbe_chem_comp_rdkit_properties.chi2v 1.719
_pdbe_chem_comp_rdkit_properties.chi3v 1.719
_pdbe_chem_comp_rdkit_properties.chi4v 1.015
_pdbe_chem_comp_rdkit_properties.chi0n 25.144
_pdbe_chem_comp_rdkit_properties.chi1n 12.736
_pdbe_chem_comp_rdkit_properties.chi2n 1.719
_pdbe_chem_comp_rdkit_properties.chi3n 1.719
_pdbe_chem_comp_rdkit_properties.chi4n 1.015
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.560
_pdbe_chem_comp_rdkit_properties.kappa1 2.714
_pdbe_chem_comp_rdkit_properties.kappa2 4.367
_pdbe_chem_comp_rdkit_properties.kappa3 2.578
_pdbe_chem_comp_rdkit_properties.Phi 0.697
#
_pdbe_chem_comp_external_mappings.comp_id CJF
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 117079404
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CJF N01 0.064 4.078 1.297 ETKDGv3 1
CJF C02 0.281 2.730 0.886 ETKDGv3 2
CJF N03 -0.836 1.894 0.551 ETKDGv3 3
CJF C04 -0.674 0.656 0.176 ETKDGv3 4
CJF C05 0.704 0.110 0.087 ETKDGv3 5
CJF C06 1.743 0.904 0.403 ETKDGv3 6
CJF N07 3.102 0.444 0.333 ETKDGv3 7
CJF C08 3.478 -0.921 -0.034 ETKDGv3 8
CJF C09 4.780 -1.014 -0.810 ETKDGv3 9
CJF C10 3.452 -1.169 -1.533 ETKDGv3 10
CJF N11 1.491 2.257 0.816 ETKDGv3 11
CJF N12 -1.827 -0.151 -0.148 ETKDGv3 12
CJF C13 -1.734 -1.617 -0.165 ETKDGv3 13
CJF C14 -3.111 -2.243 0.074 ETKDGv3 14
CJF O15 -4.075 -1.692 -0.801 ETKDGv3 15
CJF C16 -4.260 -0.325 -0.496 ETKDGv3 16
CJF C17 -2.989 0.476 -0.793 ETKDGv3 17
CJF H1 0.869 4.695 1.544 ETKDGv3 18
CJF H2 -0.906 4.460 1.354 ETKDGv3 19
CJF H3 0.864 -0.905 -0.248 ETKDGv3 20
CJF H4 3.855 1.096 0.649 ETKDGv3 21
CJF H5 3.192 -1.764 0.631 ETKDGv3 22
CJF H6 5.294 -0.051 -1.016 ETKDGv3 23
CJF H7 5.331 -1.968 -0.669 ETKDGv3 24
CJF H8 3.169 -0.295 -2.158 ETKDGv3 25
CJF H9 3.208 -2.214 -1.818 ETKDGv3 26
CJF H10 -1.340 -1.947 -1.150 ETKDGv3 27
CJF H11 -1.051 -1.972 0.637 ETKDGv3 28
CJF H12 -3.416 -2.121 1.138 ETKDGv3 29
CJF H13 -3.043 -3.335 -0.119 ETKDGv3 30
CJF H14 -5.084 0.069 -1.128 ETKDGv3 31
CJF H15 -4.570 -0.185 0.565 ETKDGv3 32
CJF H16 -3.138 1.515 -0.431 ETKDGv3 33
CJF H17 -2.820 0.508 -1.891 ETKDGv3 34
#