data_CHX
#
_chem_comp.id CHX
_chem_comp.name CYCLOHEXANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C6 H12'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 84.159
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CHX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HBT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CHX C1 C1 C 0 1 N N N N N N 16.836 31.869 -3.480 -1.249 0.255 0.720 C1 CHX 1
CHX C2 C2 C 0 1 N N N N N N 15.536 31.685 -2.676 -1.248 -0.255 -0.722 C2 CHX 2
CHX C3 C3 C 0 1 N N N N N N 15.390 30.247 -2.195 0.001 0.255 -1.442 C3 CHX 3
CHX C4 C4 C 0 1 N N N N N N 15.403 29.285 -3.375 1.249 -0.255 -0.720 C4 CHX 4
CHX C5 C5 C 0 1 N N N N N N 16.701 29.436 -4.154 1.248 0.255 0.722 C5 CHX 5
CHX C6 C6 C 0 1 N N N N N N 16.884 30.870 -4.641 -0.001 -0.255 1.442 C6 CHX 6
CHX H11 1H1 H 0 1 N N N N N N 16.965 32.920 -3.828 -1.249 1.345 0.720 H11 CHX 7
CHX H12 2H1 H 0 1 N N N N N N 17.740 31.798 -2.831 -2.140 -0.108 1.233 H12 CHX 8
CHX H21 1H2 H 0 1 N N N N N N 15.468 32.409 -1.831 -1.248 -1.345 -0.722 H21 CHX 9
CHX H22 2H2 H 0 1 N N N N N N 14.643 32.017 -3.255 -2.138 0.108 -1.236 H22 CHX 10
CHX H31 1H3 H 0 1 N N N N N N 16.163 29.983 -1.436 0.002 -0.108 -2.470 H31 CHX 11
CHX H32 2H3 H 0 1 N N N N N N 14.482 30.112 -1.560 0.001 1.345 -1.442 H32 CHX 12
CHX H41 1H4 H 0 1 N N N N N N 15.226 28.231 -3.057 1.249 -1.345 -0.720 H41 CHX 13
CHX H42 2H4 H 0 1 N N N N N N 14.507 29.410 -4.026 2.140 0.108 -1.233 H42 CHX 14
CHX H51 1H5 H 0 1 N N N N N N 17.578 29.088 -3.561 2.138 -0.108 1.236 H51 CHX 15
CHX H52 2H5 H 0 1 N N N N N N 16.763 28.705 -4.994 1.248 1.345 0.722 H52 CHX 16
CHX H61 1H6 H 0 1 N N N N N N 16.143 31.129 -5.432 -0.002 0.108 2.470 H61 CHX 17
CHX H62 2H6 H 0 1 N N N N N N 17.819 30.981 -5.236 -0.001 -1.345 1.442 H62 CHX 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CHX C1 C2 SING N N 1
CHX C1 C6 SING N N 2
CHX C1 H11 SING N N 3
CHX C1 H12 SING N N 4
CHX C2 C3 SING N N 5
CHX C2 H21 SING N N 6
CHX C2 H22 SING N N 7
CHX C3 C4 SING N N 8
CHX C3 H31 SING N N 9
CHX C3 H32 SING N N 10
CHX C4 C5 SING N N 11
CHX C4 H41 SING N N 12
CHX C4 H42 SING N N 13
CHX C5 C6 SING N N 14
CHX C5 H51 SING N N 15
CHX C5 H52 SING N N 16
CHX C6 H61 SING N N 17
CHX C6 H62 SING N N 18
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CHX SMILES ACDLabs 10.04 C1CCCCC1
CHX SMILES_CANONICAL CACTVS 3.341 C1CCCCC1
CHX SMILES CACTVS 3.341 C1CCCCC1
CHX SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 C1CCCCC1
CHX SMILES 'OpenEye OEToolkits' 1.5.0 C1CCCCC1
CHX InChI InChI 1.03 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2
CHX InChIKey InChI 1.03 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CHX 'SYSTEMATIC NAME' ACDLabs 10.04 cyclohexane
CHX 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 cyclohexane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CHX 'Create component' 1999-07-08 EBI
CHX 'Modify descriptor' 2011-06-04 RCSB
CHX 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 CHX CYS None Crosslinker 'Amino-acid side chain' 'Any position' C5 SG ? ?
2 CHX LYS None Crosslinker 'Amino-acid side chain' 'Any position' C6 NZ ? ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CHX C1 C 4.299 1.500 1
CHX C2 C 3.000 0.750 2
CHX C3 C 3.000 -0.750 3
CHX C4 C 4.299 -1.500 4
CHX C5 C 5.598 -0.750 5
CHX C6 C 5.598 0.750 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CHX C1 C2 SINGLE NONE 1
CHX C1 C6 SINGLE NONE 2
CHX C2 C3 SINGLE NONE 3
CHX C3 C4 SINGLE NONE 4
CHX C4 C5 SINGLE NONE 5
CHX C5 C6 SINGLE NONE 6
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CHX MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CHX cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CHX C1 S1 1
CHX C2 S1 1
CHX C3 S1 1
CHX C4 S1 1
CHX C5 S1 1
CHX C6 S1 1
CHX C1 F1 1
CHX C2 F1 1
CHX C3 F1 1
CHX C4 F1 1
CHX C5 F1 1
CHX C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CHX
_pdbe_chem_comp_rdkit_properties.exactmw 84.094
_pdbe_chem_comp_rdkit_properties.amw 84.162
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 56.418
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.341
_pdbe_chem_comp_rdkit_properties.CrippenMR 27.702
_pdbe_chem_comp_rdkit_properties.chi0v 3
_pdbe_chem_comp_rdkit_properties.chi1v 1.500
_pdbe_chem_comp_rdkit_properties.chi2v 0.375
_pdbe_chem_comp_rdkit_properties.chi3v 0.375
_pdbe_chem_comp_rdkit_properties.chi4v 0.188
_pdbe_chem_comp_rdkit_properties.chi0n 15
_pdbe_chem_comp_rdkit_properties.chi1n 7.500
_pdbe_chem_comp_rdkit_properties.chi2n 0.375
_pdbe_chem_comp_rdkit_properties.chi3n 0.375
_pdbe_chem_comp_rdkit_properties.chi4n 0.188
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0
_pdbe_chem_comp_rdkit_properties.kappa1 0.463
_pdbe_chem_comp_rdkit_properties.kappa2 2.222
_pdbe_chem_comp_rdkit_properties.kappa3 1
_pdbe_chem_comp_rdkit_properties.Phi 0.171
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CHX UniChem 'KEGG LIGAND' C11249
CHX UniChem ChEBI 29005
CHX UniChem ZINC ZINC000001532203
CHX UniChem eMolecules 483268
CHX UniChem fdasrs 48K5MKG32S
CHX UniChem SureChEMBL SCHEMBL476
CHX UniChem HMDB HMDB0029597
CHX UniChem 'PubChem TPHARMA' 14747348
CHX UniChem NMRShiftDB 10811
CHX UniChem Nikkaji J2.882G
CHX UniChem 'EPA CompTox Dashboard' DTXSID4021923
CHX UniChem BRENDA 3995
CHX UniChem ChemicalBook CB4193601
CHX UniChem ClinicalTrials CYCLOHEXANE
CHX UniChem rxnorm CYCLOHEXANE
CHX UniChem PubChem 8078
CHX UniChem Mcule MCULE-3136361765
CHX UniChem ACTor 110-82-7
CHX UniChem ACTor 25012-93-5
CHX UniChem ACTor 68411-76-7
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CHX C1 1.331 0.562 0.314 ETKDGv3 1
CHX C2 0.380 1.267 -0.661 ETKDGv3 2
CHX C3 -1.084 0.951 -0.327 ETKDGv3 3
CHX C4 -1.331 -0.562 -0.314 ETKDGv3 4
CHX C5 -0.380 -1.267 0.661 ETKDGv3 5
CHX C6 1.084 -0.951 0.327 ETKDGv3 6
CHX H11 1.188 0.973 1.338 ETKDGv3 7
CHX H12 2.381 0.760 0.009 ETKDGv3 8
CHX H21 0.604 0.944 -1.701 ETKDGv3 9
CHX H22 0.541 2.365 -0.601 ETKDGv3 10
CHX H31 -1.341 1.380 0.667 ETKDGv3 11
CHX H32 -1.744 1.425 -1.085 ETKDGv3 12
CHX H41 -2.381 -0.760 -0.009 ETKDGv3 13
CHX H42 -1.188 -0.973 -1.338 ETKDGv3 14
CHX H51 -0.604 -0.944 1.701 ETKDGv3 15
CHX H52 -0.541 -2.365 0.601 ETKDGv3 16
CHX H61 1.744 -1.425 1.085 ETKDGv3 17
CHX H62 1.341 -1.380 -0.667 ETKDGv3 18
#