data_CHO
#
_chem_comp.id CHO
_chem_comp.name "GLYCOCHENODEOXYCHOLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H43 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2012-12-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 449.623
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CHO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FMC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CHO C1 C1 C 0 1 N N N N N N 45.572 29.682 1.925 5.382 -2.036 0.195 C1 CHO 1
CHO C2 C2 C 0 1 N N N N N N 44.611 29.347 0.787 5.839 -1.558 -1.184 C2 CHO 2
CHO C3 C3 C 0 1 N N R N N N 43.218 28.976 1.313 6.771 -0.355 -1.024 C3 CHO 3
CHO O3 O3 O 0 1 N N N N N N 42.294 28.634 0.260 7.194 0.094 -2.313 O3 CHO 4
CHO C4 C4 C 0 1 N N N N N N 43.311 27.833 2.321 6.027 0.775 -0.310 C4 CHO 5
CHO C5 C5 C 0 1 N N S N N N 44.321 28.093 3.461 5.570 0.295 1.069 C5 CHO 6
CHO C6 C6 C 0 1 N N N N N N 44.397 26.864 4.348 4.825 1.427 1.780 C6 CHO 7
CHO C7 C7 C 0 1 N N R N N N 45.158 25.735 3.705 3.608 1.839 0.948 C7 CHO 8
CHO O7 O7 O 0 1 N N N N N N 44.644 24.652 3.366 4.040 2.286 -0.338 O7 CHO 9
CHO C8 C8 C 0 1 N N R N N N 46.589 26.126 3.406 2.673 0.640 0.785 C8 CHO 10
CHO C9 C9 C 0 1 N N S N N N 46.550 27.289 2.381 3.425 -0.492 0.066 C9 CHO 11
CHO C10 C10 C 0 1 N N S N N N 45.759 28.547 2.963 4.635 -0.905 0.905 C10 CHO 12
CHO C11 C11 C 0 1 N N N N N N 47.942 27.608 1.869 2.523 -1.696 -0.179 C11 CHO 13
CHO C12 C12 C 0 1 N N N N N N 48.753 26.384 1.389 1.249 -1.296 -0.943 C12 CHO 14
CHO C13 C13 C 0 1 N N R N N N 48.865 25.301 2.452 0.550 -0.228 -0.126 C13 CHO 15
CHO C14 C14 C 0 1 N N S N N N 47.423 24.951 2.851 1.485 1.011 -0.083 C14 CHO 16
CHO C15 C15 C 0 1 N N N N N N 47.597 23.711 3.694 0.552 2.085 0.486 C15 CHO 17
CHO C16 C16 C 0 1 N N N N N N 48.572 22.904 2.839 -0.782 1.817 -0.263 C16 CHO 18
CHO C17 C17 C 0 1 N N R N N N 49.334 23.897 1.940 -0.746 0.332 -0.703 C17 CHO 19
CHO C18 C18 C 0 1 N N N N N N 49.744 25.757 3.662 0.305 -0.741 1.294 C18 CHO 20
CHO C19 C19 C 0 1 N N N N N N 46.581 29.192 4.080 4.170 -1.384 2.282 C19 CHO 21
CHO C20 C20 C 0 1 N N R N N N 50.840 23.546 1.832 -1.949 -0.420 -0.132 C20 CHO 22
CHO C21 C21 C 0 1 N N N N N N 51.632 24.521 0.931 -1.918 -1.872 -0.613 C21 CHO 23
CHO C22 C22 C 0 1 N N N N N N 50.971 22.132 1.331 -3.241 0.248 -0.608 C22 CHO 24
CHO C23 C23 C 0 1 N N N N N N 52.376 21.602 1.345 -4.440 -0.426 0.062 C23 CHO 25
CHO C24 C24 C 0 1 N N N N N N 52.496 20.218 0.661 -5.713 0.231 -0.406 C24 CHO 26
CHO O24 O24 O 0 1 N N N N N N 51.642 19.366 0.886 -5.665 1.149 -1.198 O24 CHO 27
CHO N25 N25 N 0 1 N N N N N N 53.453 20.014 -0.096 -6.903 -0.200 0.055 N25 CHO 28
CHO C26 C26 C 0 1 N N N N N N ? ? ? -8.140 0.439 -0.401 C26 CHO 29
CHO C27 C27 C 0 1 N N N N N N ? ? ? -9.321 -0.225 0.259 C27 CHO 30
CHO OT1 OT1 O 0 1 N N N N N N ? ? ? -9.148 -1.138 1.031 OT1 CHO 31
CHO OT2 OT2 O 0 1 N N N N N N ? ? ? -10.566 0.199 -0.011 OT2 CHO 32
CHO H11 H11 H 0 1 N N N N N N 46.555 29.913 1.488 4.720 -2.895 0.081 H11 CHO 33
CHO H12 H12 H 0 1 N N N N N N 45.187 30.568 2.451 6.252 -2.325 0.786 H12 CHO 34
CHO H21 H21 H 0 1 N N N N N N 44.522 30.222 0.126 6.370 -2.364 -1.691 H21 CHO 35
CHO H22 H22 H 0 1 N N N N N N 45.015 28.497 0.217 4.969 -1.268 -1.774 H22 CHO 36
CHO H3 H3 H 0 1 N N N N N N 42.826 29.854 1.848 7.641 -0.645 -0.436 H3 CHO 37
CHO HO3 HO3 H 0 1 N N N N N N 41.451 28.413 0.637 7.674 -0.573 -2.823 HO3 CHO 38
CHO H41 H41 H 0 1 N N N N N N 42.317 27.680 2.766 6.692 1.632 -0.195 H41 CHO 39
CHO H42 H42 H 0 1 N N N N N N 43.618 26.922 1.786 5.157 1.067 -0.899 H42 CHO 40
CHO H5 H5 H 0 1 N N N N N N 43.921 28.917 4.069 6.439 0.004 1.660 H5 CHO 41
CHO H61 H61 H 0 1 N N N N N N 44.899 27.138 5.288 4.495 1.084 2.761 H61 CHO 42
CHO H62 H62 H 0 1 N N N N N N 43.374 26.522 4.565 5.490 2.282 1.899 H62 CHO 43
CHO H7 H7 H 0 1 N N N N N N 45.444 25.331 4.687 3.079 2.646 1.455 H7 CHO 44
CHO HO7 HO7 H 0 1 N N N N N N 45.309 24.092 2.983 4.637 3.045 -0.311 HO7 CHO 45
CHO H8 H8 H 0 1 N N N N N N 47.063 26.489 4.330 2.340 0.296 1.764 H8 CHO 46
CHO H9 H9 H 0 1 N N N N N N 45.965 26.931 1.521 3.774 -0.125 -0.899 H9 CHO 47
CHO H111 H111 H 0 0 N N N N N N 47.844 28.306 1.024 3.069 -2.439 -0.760 H111 CHO 48
CHO H112 H112 H 0 0 N N N N N N 48.503 28.092 2.682 2.241 -2.132 0.780 H112 CHO 49
CHO H121 H121 H 0 0 N N N N N N 48.258 25.959 0.504 1.514 -0.900 -1.923 H121 CHO 50
CHO H122 H122 H 0 0 N N N N N N 49.766 26.717 1.118 0.597 -2.162 -1.057 H122 CHO 51
CHO H14 H14 H 0 1 N N N N N N 46.920 24.631 1.927 1.817 1.274 -1.087 H14 CHO 52
CHO H151 H151 H 0 0 N N N N N N 48.026 23.950 4.678 0.423 1.955 1.561 H151 CHO 53
CHO H152 H152 H 0 0 N N N N N N 46.644 23.179 3.829 0.928 3.083 0.260 H152 CHO 54
CHO H161 H161 H 0 0 N N N N N N 49.279 22.364 3.485 -1.627 1.989 0.404 H161 CHO 55
CHO H162 H162 H 0 0 N N N N N N 48.019 22.184 2.218 -0.857 2.465 -1.137 H162 CHO 56
CHO H17 H17 H 0 1 N N N N N N 48.917 23.785 0.928 -0.737 0.261 -1.791 H17 CHO 57
CHO H181 H181 H 0 0 N N N N N N 49.797 24.946 4.403 1.255 -1.022 1.748 H181 CHO 58
CHO H182 H182 H 0 0 N N N N N N 50.757 25.998 3.309 -0.164 0.044 1.888 H182 CHO 59
CHO H183 H183 H 0 0 N N N N N N 49.296 26.648 4.125 -0.352 -1.610 1.258 H183 CHO 60
CHO H191 H191 H 0 0 N N N N N N 46.766 28.453 4.873 5.035 -1.676 2.876 H191 CHO 61
CHO H192 H192 H 0 0 N N N N N N 47.541 29.542 3.673 3.637 -0.577 2.786 H192 CHO 62
CHO H193 H193 H 0 0 N N N N N N 46.027 30.046 4.497 3.505 -2.240 2.164 H193 CHO 63
CHO H20 H20 H 0 1 N N N N N N 51.270 23.596 2.843 -1.908 -0.397 0.957 H20 CHO 64
CHO H211 H211 H 0 0 N N N N N N 52.688 24.215 0.899 -1.890 -1.893 -1.702 H211 CHO 65
CHO H212 H212 H 0 0 N N N N N N 51.214 24.502 -0.086 -1.032 -2.368 -0.216 H212 CHO 66
CHO H213 H213 H 0 0 N N N N N N 51.558 25.540 1.339 -2.811 -2.390 -0.263 H213 CHO 67
CHO H221 H221 H 0 0 N N N N N N 50.351 21.482 1.966 -3.223 1.304 -0.342 H221 CHO 68
CHO H222 H222 H 0 0 N N N N N N 50.599 22.097 0.296 -3.325 0.146 -1.690 H222 CHO 69
CHO H231 H231 H 0 0 N N N N N N 53.027 22.314 0.816 -4.458 -1.483 -0.203 H231 CHO 70
CHO H232 H232 H 0 0 N N N N N N 52.707 21.509 2.390 -4.356 -0.325 1.144 H232 CHO 71
CHO HN HN H 0 1 N N N N N N 54.389 20.116 -0.432 -6.941 -0.934 0.688 HN CHO 72
CHO H261 H261 H 0 0 N N N N N N ? ? ? -8.122 1.496 -0.135 H261 CHO 73
CHO H262 H262 H 0 0 N N N N N N ? ? ? -8.224 0.338 -1.483 H262 CHO 74
CHO HOT HOT H 0 1 N N N N N N ? ? ? -11.292 -0.258 0.437 HOT CHO 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CHO C1 C2 SING N N 1
CHO C1 C10 SING N N 2
CHO C1 H11 SING N N 3
CHO C1 H12 SING N N 4
CHO C2 C3 SING N N 5
CHO C2 H21 SING N N 6
CHO C2 H22 SING N N 7
CHO C3 O3 SING N N 8
CHO C3 C4 SING N N 9
CHO C3 H3 SING N N 10
CHO O3 HO3 SING N N 11
CHO C4 C5 SING N N 12
CHO C4 H41 SING N N 13
CHO C4 H42 SING N N 14
CHO C5 C6 SING N N 15
CHO C5 C10 SING N N 16
CHO C5 H5 SING N N 17
CHO C6 C7 SING N N 18
CHO C6 H61 SING N N 19
CHO C6 H62 SING N N 20
CHO C7 O7 SING N N 21
CHO C7 C8 SING N N 22
CHO C7 H7 SING N N 23
CHO O7 HO7 SING N N 24
CHO C8 C9 SING N N 25
CHO C8 C14 SING N N 26
CHO C8 H8 SING N N 27
CHO C9 C10 SING N N 28
CHO C9 C11 SING N N 29
CHO C9 H9 SING N N 30
CHO C10 C19 SING N N 31
CHO C11 C12 SING N N 32
CHO C11 H111 SING N N 33
CHO C11 H112 SING N N 34
CHO C12 C13 SING N N 35
CHO C12 H121 SING N N 36
CHO C12 H122 SING N N 37
CHO C13 C14 SING N N 38
CHO C13 C17 SING N N 39
CHO C13 C18 SING N N 40
CHO C14 C15 SING N N 41
CHO C14 H14 SING N N 42
CHO C15 C16 SING N N 43
CHO C15 H151 SING N N 44
CHO C15 H152 SING N N 45
CHO C16 C17 SING N N 46
CHO C16 H161 SING N N 47
CHO C16 H162 SING N N 48
CHO C17 C20 SING N N 49
CHO C17 H17 SING N N 50
CHO C18 H181 SING N N 51
CHO C18 H182 SING N N 52
CHO C18 H183 SING N N 53
CHO C19 H191 SING N N 54
CHO C19 H192 SING N N 55
CHO C19 H193 SING N N 56
CHO C20 C21 SING N N 57
CHO C20 C22 SING N N 58
CHO C20 H20 SING N N 59
CHO C21 H211 SING N N 60
CHO C21 H212 SING N N 61
CHO C21 H213 SING N N 62
CHO C22 C23 SING N N 63
CHO C22 H221 SING N N 64
CHO C22 H222 SING N N 65
CHO C23 C24 SING N N 66
CHO C23 H231 SING N N 67
CHO C23 H232 SING N N 68
CHO C24 O24 DOUB N N 69
CHO C24 N25 SING N N 70
CHO N25 C26 SING N N 71
CHO N25 HN SING N N 72
CHO C26 C27 SING N N 73
CHO C26 H261 SING N N 74
CHO C26 H262 SING N N 75
CHO C27 OT1 DOUB N N 76
CHO C27 OT2 SING N N 77
CHO OT2 HOT SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CHO SMILES ACDLabs 12.01 O=C(O)CNC(=O)CCC(C4C3(C(C1C(C2(C(CC1O)CC(O)CC2)C)CC3)CC4)C)C
CHO InChI InChI 1.03 InChI=1S/C26H43NO5/c1-15(4-7-22(30)27-14-23(31)32)18-5-6-19-24-20(9-11-26(18,19)3)25(2)10-8-17(28)12-16(25)13-21(24)29/h15-21,24,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32)/t15-,16+,17-,18-,19+,20+,21-,24+,25+,26-/m1/s1
CHO InChIKey InChI 1.03 GHCZAUBVMUEKKP-GYPHWSFCSA-N
CHO SMILES_CANONICAL CACTVS 3.370 C[C@H](CCC(=O)NCC(O)=O)[C@H]1CC[C@H]2[C@@H]3[C@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
CHO SMILES CACTVS 3.370 C[CH](CCC(=O)NCC(O)=O)[CH]1CC[CH]2[CH]3[CH](O)C[CH]4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
CHO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H](CCC(=O)NCC(=O)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2C(C[C@H]4[C@@]3(CC[C@H](C4)O)C)O)C
CHO SMILES "OpenEye OEToolkits" 1.7.6 CC(CCC(=O)NCC(=O)O)C1CCC2C1(CCC3C2C(CC4C3(CCC(C4)O)C)O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CHO "SYSTEMATIC NAME" ACDLabs 12.01 N-[(3alpha,5beta,7beta,8alpha)-3,7-dihydroxy-24-oxocholan-24-yl]glycine
CHO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[(4R)-4-[(3R,5S,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3,7-bis(oxidanyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoyl]amino]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CHO 'Create component' 1999-07-08 RCSB
CHO 'Modify descriptor' 2011-06-04 RCSB
CHO 'Modify linking type' 2012-12-21 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id CHO
_pdbe_chem_comp_drugbank_details.drugbank_id DB02123
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Glycochenodeoxycholic Acid'
_pdbe_chem_comp_drugbank_details.description
'A bile salt formed in the liver from chenodeoxycholate and glycine, usually as the sodium salt. It acts as a detergent to solubilize fats for absorption and is itself absorbed. It is a cholagogue and choleretic. [PubChem]'
_pdbe_chem_comp_drugbank_details.cas_number 640-79-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id CHO
_pdbe_chem_comp_synonyms.name 'Glycochenodeoxycholic Acid'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CHO
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02123
_pdbe_chem_comp_drugbank_classification.parent 'Glycinated bile acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Steroids and steroid derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as glycinated bile acids and derivatives. These are compounds with a structure characterized by the presence of a glycine linked to a bile acid skeleton.'
#
_pdbe_chem_comp_drugbank_targets.comp_id CHO
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02123
_pdbe_chem_comp_drugbank_targets.name '7alpha-hydroxysteroid dehydrogenase'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P0AET8
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CHO C1 C 6.540 -2.816 1
CHO C2 C 5.118 -3.608 2
CHO C3 C 5.106 -5.236 3
CHO O3 O 3.804 -5.981 4
CHO C4 C 6.515 -6.050 5
CHO C5 C 7.918 -5.225 6
CHO C6 C 9.271 -6.006 7
CHO C7 C 10.618 -5.215 8
CHO O7 O 11.926 -5.949 9
CHO C8 C 10.594 -3.652 10
CHO C9 C 9.295 -2.902 11
CHO C10 C 7.930 -3.662 12
CHO C11 C 9.295 -1.402 13
CHO C12 C 10.594 -0.652 14
CHO C13 C 11.893 -1.402 15
CHO C14 C 11.893 -2.902 16
CHO C15 C 13.312 -3.359 17
CHO C16 C 14.188 -2.152 18
CHO C17 C 13.312 -0.945 19
CHO C18 C 11.893 0.098 20
CHO C19 C 7.942 -2.163 21
CHO C20 C 13.779 0.481 22
CHO C21 C 12.777 1.597 23
CHO C22 C 15.246 0.790 24
CHO C23 C 15.712 2.216 25
CHO C24 C 17.180 2.525 26
CHO O24 O 18.182 1.409 27
CHO N25 N 17.646 3.951 28
CHO C26 C 19.114 4.260 29
CHO C27 C 19.580 5.686 30
CHO OT1 O 21.048 5.995 31
CHO OT2 O 18.578 6.803 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CHO C1 C2 SINGLE NONE 1
CHO C1 C10 SINGLE NONE 2
CHO C2 C3 SINGLE NONE 3
CHO C3 O3 SINGLE BEGINDASH 4
CHO C3 C4 SINGLE NONE 5
CHO C4 C5 SINGLE NONE 6
CHO C5 C6 SINGLE NONE 7
CHO C5 C10 SINGLE NONE 8
CHO C6 C7 SINGLE NONE 9
CHO C7 O7 SINGLE BEGINDASH 10
CHO C7 C8 SINGLE NONE 11
CHO C8 C9 SINGLE NONE 12
CHO C8 C14 SINGLE NONE 13
CHO C9 C10 SINGLE NONE 14
CHO C9 C11 SINGLE NONE 15
CHO C10 C19 SINGLE BEGINWEDGE 16
CHO C11 C12 SINGLE NONE 17
CHO C12 C13 SINGLE NONE 18
CHO C13 C14 SINGLE NONE 19
CHO C13 C17 SINGLE NONE 20
CHO C13 C18 SINGLE BEGINWEDGE 21
CHO C14 C15 SINGLE NONE 22
CHO C15 C16 SINGLE NONE 23
CHO C17 C16 SINGLE BEGINWEDGE 24
CHO C17 C20 SINGLE NONE 25
CHO C20 C21 SINGLE BEGINDASH 26
CHO C20 C22 SINGLE NONE 27
CHO C22 C23 SINGLE NONE 28
CHO C23 C24 SINGLE NONE 29
CHO C24 O24 DOUBLE NONE 30
CHO C24 N25 SINGLE NONE 31
CHO N25 C26 SINGLE NONE 32
CHO C26 C27 SINGLE NONE 33
CHO C27 OT1 DOUBLE NONE 34
CHO C27 OT2 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CHO MurckoScaffold S1 scaffold 'C1CC[C@H]2CC[C@H]3[C@@H]4CCCC4CC[C@@H]3C2C1' InChI=1S/C17H28/c1-2-6-14-12(4-1)8-10-17-15-7-3-5-13(15)9-11-16(14)17/h12-17H,1-11H2/t12-,13-,14-,15+,16+,17-/m0/s1 UACIBCPNAKBWHX-ROIMOXLHSA-N
CHO amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CHO cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
CHO cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
CHO peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
CHO steroid-like F5 fragment C1~C~C~C2~C(~C~1)~C~C~C1~C3~C~C~C~C~3~C~C~C~2~1 ? ?
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CHO C1 S1 1
CHO C2 S1 1
CHO C3 S1 1
CHO C4 S1 1
CHO C5 S1 1
CHO C6 S1 1
CHO C7 S1 1
CHO C8 S1 1
CHO C9 S1 1
CHO C10 S1 1
CHO C11 S1 1
CHO C12 S1 1
CHO C13 S1 1
CHO C14 S1 1
CHO C15 S1 1
CHO C16 S1 1
CHO C17 S1 1
CHO N25 F1 1
CHO C24 F1 1
CHO O24 F1 1
CHO C23 F1 1
CHO C1 F2 1
CHO C2 F2 1
CHO C3 F2 1
CHO C4 F2 1
CHO C5 F2 1
CHO C10 F2 1
CHO C5 F2 2
CHO C6 F2 2
CHO C7 F2 2
CHO C8 F2 2
CHO C9 F2 2
CHO C10 F2 2
CHO C8 F2 3
CHO C9 F2 3
CHO C11 F2 3
CHO C12 F2 3
CHO C13 F2 3
CHO C14 F2 3
CHO C13 F3 1
CHO C14 F3 1
CHO C15 F3 1
CHO C16 F3 1
CHO C17 F3 1
CHO OT1 F4 1
CHO C27 F4 1
CHO C26 F4 1
CHO N25 F4 1
CHO C2 F5 1
CHO C3 F5 1
CHO C4 F5 1
CHO C5 F5 1
CHO C10 F5 1
CHO C1 F5 1
CHO C9 F5 1
CHO C8 F5 1
CHO C7 F5 1
CHO C6 F5 1
CHO C14 F5 1
CHO C13 F5 1
CHO C12 F5 1
CHO C11 F5 1
CHO C17 F5 1
CHO C16 F5 1
CHO C15 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CHO
_pdbe_chem_comp_rdkit_properties.exactmw 449.314
_pdbe_chem_comp_rdkit_properties.amw 449.632
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.923
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 252.827
_pdbe_chem_comp_rdkit_properties.tpsa 106.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.594
_pdbe_chem_comp_rdkit_properties.CrippenMR 121.657
_pdbe_chem_comp_rdkit_properties.chi0v 15.488
_pdbe_chem_comp_rdkit_properties.chi1v 8.468
_pdbe_chem_comp_rdkit_properties.chi2v 4.548
_pdbe_chem_comp_rdkit_properties.chi3v 4.548
_pdbe_chem_comp_rdkit_properties.chi4v 3.157
_pdbe_chem_comp_rdkit_properties.chi0n 58.488
_pdbe_chem_comp_rdkit_properties.chi1n 29.640
_pdbe_chem_comp_rdkit_properties.chi2n 4.548
_pdbe_chem_comp_rdkit_properties.chi3n 4.548
_pdbe_chem_comp_rdkit_properties.chi4n 3.157
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 4.658
_pdbe_chem_comp_rdkit_properties.kappa2 8.901
_pdbe_chem_comp_rdkit_properties.kappa3 4.106
_pdbe_chem_comp_rdkit_properties.Phi 1.296
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CHO UniChem DrugBank DB02123
CHO UniChem 'Guide to Pharmacology' 4545
CHO UniChem 'KEGG LIGAND' C05466
CHO UniChem ChEBI 36274
CHO UniChem ZINC ZINC000003914812
CHO UniChem eMolecules 1939099
CHO UniChem fdasrs 451ZNJ667Y
CHO UniChem HMDB HMDB0000637
CHO UniChem PubChem 12544
CHO UniChem NMRShiftDB 60020711
CHO UniChem ACTor 640-79-9
CHO UniChem Recon dgchol
CHO UniChem Nikkaji J22.601G
CHO UniChem BindingDb 50375590
CHO UniChem LipidMaps LMST05030008
CHO UniChem MetaboLights MTBLC36274
CHO UniChem BRENDA 153388
CHO UniChem BRENDA 154372
CHO UniChem BRENDA 29515
CHO UniChem BRENDA 4818
CHO UniChem BRENDA 90016
CHO UniChem MedChemExpress HY-N2334
CHO UniChem 'Probes And Drugs' PD008534
CHO UniChem SureChEMBL SCHEMBL236354
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CHO C1 -4.083 2.212 1.091 ETKDGv3 1
CHO C2 -4.991 2.215 -0.131 ETKDGv3 2
CHO C3 -6.113 1.204 0.088 ETKDGv3 3
CHO O3 -7.006 1.240 -0.995 ETKDGv3 4
CHO C4 -5.506 -0.190 0.187 ETKDGv3 5
CHO C5 -4.439 -0.349 1.315 ETKDGv3 6
CHO C6 -3.792 -1.762 1.114 ETKDGv3 7
CHO C7 -2.284 -1.911 1.413 ETKDGv3 8
CHO O7 -1.862 -3.156 0.923 ETKDGv3 9
CHO C8 -1.384 -0.734 0.874 ETKDGv3 10
CHO C9 -2.241 0.479 0.361 ETKDGv3 11
CHO C10 -3.392 0.833 1.377 ETKDGv3 12
CHO C11 -1.352 1.675 -0.079 ETKDGv3 13
CHO C12 -0.259 1.263 -1.089 ETKDGv3 14
CHO C13 0.610 0.099 -0.557 ETKDGv3 15
CHO C14 -0.344 -1.084 -0.236 ETKDGv3 16
CHO C15 0.601 -2.270 -0.061 ETKDGv3 17
CHO C16 1.747 -1.998 -1.044 ETKDGv3 18
CHO C17 1.546 -0.570 -1.613 ETKDGv3 19
CHO C18 1.449 0.576 0.677 ETKDGv3 20
CHO C19 -2.839 0.981 2.829 ETKDGv3 21
CHO C20 2.912 0.123 -1.954 ETKDGv3 22
CHO C21 2.721 1.558 -2.485 ETKDGv3 23
CHO C22 3.717 -0.702 -3.005 ETKDGv3 24
CHO C23 5.239 -0.484 -2.917 ETKDGv3 25
CHO C24 5.811 -1.120 -1.683 ETKDGv3 26
CHO O24 6.043 -2.360 -1.675 ETKDGv3 27
CHO N25 6.038 -0.336 -0.505 ETKDGv3 28
CHO C26 6.373 -0.962 0.773 ETKDGv3 29
CHO C27 6.351 0.050 1.874 ETKDGv3 30
CHO OT1 7.421 0.600 2.249 ETKDGv3 31
CHO OT2 5.139 0.419 2.449 ETKDGv3 32
CHO H11 -4.723 2.500 1.956 ETKDGv3 33
CHO H12 -3.344 3.035 1.014 ETKDGv3 34
CHO H21 -4.413 1.976 -1.050 ETKDGv3 35
CHO H22 -5.427 3.230 -0.254 ETKDGv3 36
CHO H3 -6.663 1.427 1.033 ETKDGv3 37
CHO HO3 -7.566 2.051 -0.876 ETKDGv3 38
CHO H41 -5.060 -0.428 -0.805 ETKDGv3 39
CHO H42 -6.325 -0.923 0.360 ETKDGv3 40
CHO H5 -4.998 -0.359 2.278 ETKDGv3 41
CHO H61 -4.351 -2.494 1.739 ETKDGv3 42
CHO H62 -3.925 -2.111 0.066 ETKDGv3 43
CHO H7 -2.175 -1.944 2.521 ETKDGv3 44
CHO HO7 -2.236 -3.856 1.521 ETKDGv3 45
CHO H8 -0.802 -0.405 1.754 ETKDGv3 46
CHO H9 -2.736 0.149 -0.580 ETKDGv3 47
CHO H111 -1.974 2.431 -0.600 ETKDGv3 48
CHO H112 -0.901 2.173 0.803 ETKDGv3 49
CHO H121 -0.745 0.968 -2.046 ETKDGv3 50
CHO H122 0.354 2.160 -1.298 ETKDGv3 51
CHO H14 -0.943 -1.318 -1.151 ETKDGv3 52
CHO H151 0.124 -3.233 -0.334 ETKDGv3 53
CHO H152 0.976 -2.324 0.984 ETKDGv3 54
CHO H161 2.718 -2.091 -0.509 ETKDGv3 55
CHO H162 1.722 -2.747 -1.866 ETKDGv3 56
CHO H17 0.977 -0.668 -2.568 ETKDGv3 57
CHO H181 0.832 0.945 1.516 ETKDGv3 58
CHO H182 2.099 -0.230 1.074 ETKDGv3 59
CHO H183 2.103 1.426 0.404 ETKDGv3 60
CHO H191 -2.022 1.733 2.863 ETKDGv3 61
CHO H192 -3.636 1.316 3.528 ETKDGv3 62
CHO H193 -2.460 0.045 3.266 ETKDGv3 63
CHO H20 3.508 0.182 -1.022 ETKDGv3 64
CHO H211 1.887 1.599 -3.219 ETKDGv3 65
CHO H212 3.635 1.929 -2.991 ETKDGv3 66
CHO H213 2.530 2.266 -1.657 ETKDGv3 67
CHO H221 3.535 -1.790 -2.907 ETKDGv3 68
CHO H222 3.374 -0.435 -4.030 ETKDGv3 69
CHO H231 5.490 0.596 -2.942 ETKDGv3 70
CHO H232 5.717 -0.947 -3.808 ETKDGv3 71
CHO HN 5.906 0.700 -0.558 ETKDGv3 72
CHO H261 7.378 -1.431 0.705 ETKDGv3 73
CHO H262 5.628 -1.754 1.004 ETKDGv3 74
CHO HOT 5.103 1.117 3.182 ETKDGv3 75
#