data_CCU
#
_chem_comp.id CCU
_chem_comp.name "(2Z,4Z)-HEXA-2,4-DIENEDIOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "CIS,CIS-MUCONIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-12-09
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 142.109
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CCU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2F7A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CCU C2 C2 C 0 1 N N N N N N 41.000 37.817 -16.517 -1.501 1.033 -0.116 C2 CCU 1
CCU C3 C3 C 0 1 N N N N N N 40.364 38.358 -17.604 -0.201 0.684 -0.237 C3 CCU 2
CCU C4 C4 C 0 1 N N N N N N 41.010 38.874 -18.792 0.200 -0.712 -0.066 C4 CCU 3
CCU C6 C6 C 0 1 N N N N N N 38.884 39.487 -19.954 2.530 0.010 0.053 C6 CCU 4
CCU O4 O4 O 0 1 N N N N N N 38.537 40.566 -20.440 2.196 1.165 0.231 O4 CCU 5
CCU O3 O3 O 0 1 N N N N N N 38.154 38.767 -19.594 3.837 -0.305 -0.054 O3 CCU 6
CCU C5 C5 C 0 1 N N N N N N 40.388 39.364 -19.828 1.511 -1.041 -0.047 C5 CCU 7
CCU C1 C1 C 0 1 N N N N N N 42.445 37.627 -16.268 -2.530 -0.005 0.018 C1 CCU 8
CCU O1 O1 O 0 1 N N N N N N 43.397 37.872 -17.147 -2.207 -1.174 0.098 O1 CCU 9
CCU O2 O2 O 0 1 N N N N N N 42.708 37.217 -15.158 -3.834 0.338 0.052 O2 CCU 10
CCU H2 H2 H 0 1 N N N N N N 40.349 37.479 -15.724 -1.782 2.075 -0.117 H2 CCU 11
CCU H3 H3 H 0 1 N N N N N N 39.285 38.403 -17.571 0.541 1.435 -0.460 H3 CCU 12
CCU H4 H4 H 0 1 N N N N N N 42.089 38.851 -18.823 -0.551 -1.480 0.046 H4 CCU 13
CCU HO3 HO3 H 0 1 N N N N N N 37.278 39.113 -19.721 4.508 0.388 0.012 HO3 CCU 14
CCU H5 H5 H 0 1 N N N N N N 40.989 39.707 -20.657 1.808 -2.078 -0.106 H5 CCU 15
CCU HO2 HO2 H 0 1 N N N N N N 43.649 37.121 -15.070 -4.512 -0.346 0.140 HO2 CCU 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CCU C2 C3 DOUB N Z 1
CCU C2 C1 SING N N 2
CCU C2 H2 SING N N 3
CCU C3 C4 SING N N 4
CCU C3 H3 SING N N 5
CCU C4 C5 DOUB N Z 6
CCU C4 H4 SING N N 7
CCU C6 O4 DOUB N N 8
CCU C6 O3 SING N N 9
CCU C6 C5 SING N N 10
CCU O3 HO3 SING N N 11
CCU C5 H5 SING N N 12
CCU C1 O1 DOUB N N 13
CCU C1 O2 SING N N 14
CCU O2 HO2 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CCU SMILES ACDLabs 10.04 O=C(O)\C=C/C=C\C(=O)O
CCU SMILES_CANONICAL CACTVS 3.341 OC(=O)/C=C\C=C/C(O)=O
CCU SMILES CACTVS 3.341 OC(=O)C=CC=CC(O)=O
CCU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(=C/C(=O)O)/C=C\C(=O)O
CCU SMILES "OpenEye OEToolkits" 1.5.0 C(=CC(=O)O)C=CC(=O)O
CCU InChI InChI 1.03 InChI=1S/C6H6O4/c7-5(8)3-1-2-4-6(9)10/h1-4H,(H,7,8)(H,9,10)/b3-1-,4-2-
CCU InChIKey InChI 1.03 TXXHDPDFNKHHGW-CCAGOZQPSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CCU "SYSTEMATIC NAME" ACDLabs 10.04 "(2Z,4Z)-hexa-2,4-dienedioic acid"
CCU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2Z,4Z)-hexa-2,4-dienedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CCU 'Create component' 2005-12-09 RCSB
CCU 'Modify descriptor' 2011-06-04 RCSB
CCU 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CCU
_pdbx_chem_comp_synonyms.name "CIS,CIS-MUCONIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id CCU
_pdbe_chem_comp_synonyms.name 'CIS,CIS-MUCONIC ACID'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CCU C2 C 9.002 -1.500 1
CCU C3 C 7.702 -0.750 2
CCU C4 C 7.702 0.750 3
CCU C6 C 5.104 0.750 4
CCU O4 O 3.805 1.500 5
CCU O3 O 5.104 -0.750 6
CCU C5 C 6.404 1.500 7
CCU C1 C 10.301 -0.750 8
CCU O1 O 11.600 -1.500 9
CCU O2 O 10.301 0.750 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CCU C2 C3 DOUBLE NONE 1
CCU C2 C1 SINGLE ENDUPRIGHT 2
CCU C3 C4 SINGLE ENDUPRIGHT 3
CCU C4 C5 DOUBLE NONE 4
CCU C6 O4 DOUBLE NONE 5
CCU C6 O3 SINGLE NONE 6
CCU C6 C5 SINGLE ENDUPRIGHT 7
CCU C1 O1 DOUBLE NONE 8
CCU C1 O2 SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id CCU
_pdbe_chem_comp_rdkit_properties.exactmw 142.027
_pdbe_chem_comp_rdkit_properties.amw 142.110
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 65.699
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.268
_pdbe_chem_comp_rdkit_properties.CrippenMR 33.552
_pdbe_chem_comp_rdkit_properties.chi0v 4.633
_pdbe_chem_comp_rdkit_properties.chi1v 2.066
_pdbe_chem_comp_rdkit_properties.chi2v 0.392
_pdbe_chem_comp_rdkit_properties.chi3v 0.392
_pdbe_chem_comp_rdkit_properties.chi4v 0.165
_pdbe_chem_comp_rdkit_properties.chi0n 10.633
_pdbe_chem_comp_rdkit_properties.chi1n 4.883
_pdbe_chem_comp_rdkit_properties.chi2n 0.392
_pdbe_chem_comp_rdkit_properties.chi3n 0.392
_pdbe_chem_comp_rdkit_properties.chi4n 0.165
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.580
_pdbe_chem_comp_rdkit_properties.kappa1 2.574
_pdbe_chem_comp_rdkit_properties.kappa2 4.314
_pdbe_chem_comp_rdkit_properties.kappa3 6.420
_pdbe_chem_comp_rdkit_properties.Phi 1.110
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CCU UniChem PDBe CCU
CCU UniChem 'KEGG LIGAND' C02480
CCU UniChem ChEBI 16508
CCU UniChem ZINC ZINC000012405128
CCU UniChem eMolecules 25688932
CCU UniChem fdasrs 2G78TUQ51G
CCU UniChem SureChEMBL SCHEMBL2727
CCU UniChem HMDB HMDB0006331
CCU UniChem PubChem 5280518
CCU UniChem NMRShiftDB 60073780
CCU UniChem ACTor 505-70-4
CCU UniChem Nikkaji J101.270C
CCU UniChem LipidMaps LMFA01170077
CCU UniChem MetaboLights MTBLC16508
CCU UniChem BRENDA 1375
CCU UniChem BRENDA 153841
CCU UniChem BRENDA 45403
CCU UniChem BRENDA 92923
CCU UniChem ChemicalBook CB1497135
CCU UniChem MedChemExpress HY-W000800
CCU UniChem 'Probes And Drugs' PD124068
CCU UniChem 'PubChem TPHARMA' 87548440
CCU UniChem ACTor 1119-72-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CCU C2 1.477 -1.384 -0.055 ETKDGv3 1
CCU C3 0.229 -0.950 -0.285 ETKDGv3 2
CCU C4 -0.116 0.442 -0.643 ETKDGv3 3
CCU C6 -2.448 0.395 0.287 ETKDGv3 4
CCU O4 -2.284 -0.594 1.049 ETKDGv3 5
CCU O3 -3.710 0.970 0.175 ETKDGv3 6
CCU C5 -1.322 0.998 -0.454 ETKDGv3 7
CCU C1 2.676 -0.531 0.062 ETKDGv3 8
CCU O1 3.815 -1.066 -0.001 ETKDGv3 9
CCU O2 2.577 0.837 0.297 ETKDGv3 10
CCU H2 1.618 -2.450 0.082 ETKDGv3 11
CCU H3 -0.557 -1.693 -0.293 ETKDGv3 12
CCU H4 0.622 1.033 -1.170 ETKDGv3 13
CCU HO3 -4.500 0.592 0.684 ETKDGv3 14
CCU H5 -1.484 1.990 -0.858 ETKDGv3 15
CCU HO2 3.406 1.410 0.394 ETKDGv3 16
#