data_CC9
#
_chem_comp.id CC9
_chem_comp.name curcumin
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H20 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-19
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 368.380
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CC9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4K58
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CC9 O1 O1 O 0 1 N N N N N N 23.482 15.825 57.311 1.119 1.567 -0.001 O1 CC9 1
CC9 C1 C1 C 0 1 N N N N N N 23.860 16.979 56.902 1.230 0.357 -0.007 C1 CC9 2
CC9 C2 C2 C 0 1 N N N N N N 23.333 17.583 55.861 2.509 -0.232 -0.008 C2 CC9 3
CC9 C3 C3 C 0 1 N N N N N N 22.340 17.289 55.192 3.616 0.551 -0.007 C3 CC9 4
CC9 C4 C4 C 0 1 Y N N N N N 21.917 18.279 54.209 4.949 -0.063 -0.008 C4 CC9 5
CC9 C10 C10 C 0 1 Y N N N N N 20.771 17.956 53.481 6.094 0.743 -0.007 C10 CC9 6
CC9 C8 C8 C 0 1 Y N N N N N 20.410 18.850 52.477 7.345 0.160 -0.008 C8 CC9 7
CC9 O3 O3 O 0 1 N N N N N N 19.300 18.528 51.712 8.459 0.939 -0.007 O3 CC9 8
CC9 C9 C9 C 0 1 N N N N N N 19.412 17.610 50.605 8.260 2.355 -0.006 C9 CC9 9
CC9 C7 C7 C 0 1 Y N N N N N 21.168 20.044 52.257 7.467 -1.230 -0.009 C7 CC9 10
CC9 O2 O2 O 0 1 N N N N N N 20.798 20.950 51.284 8.699 -1.802 -0.010 O2 CC9 11
CC9 C6 C6 C 0 1 Y N N N N N 22.303 20.346 53.035 6.332 -2.031 -0.009 C6 CC9 12
CC9 C5 C5 C 0 1 Y N N N N N 22.654 19.470 54.014 5.080 -1.458 -0.003 C5 CC9 13
CC9 C11 C11 C 0 1 N N N N N N 25.100 17.827 57.209 -0.000 -0.513 -0.008 C11 CC9 14
CC9 C12 C12 C 0 1 N N N N N N 25.319 19.075 58.094 -1.230 0.357 -0.000 C12 CC9 15
CC9 O4 O4 O 0 1 N N N N N N 24.920 20.284 58.286 -1.119 1.567 0.005 O4 CC9 16
CC9 C13 C13 C 0 1 N N N N N N 26.366 18.557 58.637 -2.509 -0.232 0.001 C13 CC9 17
CC9 C14 C14 C 0 1 N N N N N N 27.096 18.913 59.556 -3.616 0.551 0.008 C14 CC9 18
CC9 C15 C15 C 0 1 Y N N N N N 28.065 17.909 59.859 -4.949 -0.063 0.009 C15 CC9 19
CC9 C16 C16 C 0 1 Y N N N N N 28.044 16.734 59.127 -6.094 0.743 0.010 C16 CC9 20
CC9 C17 C17 C 0 1 Y N N N N N 28.908 15.678 59.216 -7.345 0.160 0.010 C17 CC9 21
CC9 O5 O5 O 0 1 N N N N N N 28.547 14.581 58.400 -8.459 0.940 0.012 O5 CC9 22
CC9 C18 C18 C 0 1 N N N N N N 29.101 14.133 57.153 -8.260 2.355 0.012 C18 CC9 23
CC9 C19 C19 C 0 1 Y N N N N N 29.772 15.888 60.247 -7.467 -1.230 0.009 C19 CC9 24
CC9 O6 O6 O 0 1 N N N N N N 30.755 15.077 60.627 -8.699 -1.801 0.009 O6 CC9 25
CC9 C20 C20 C 0 1 Y N N N N N 29.883 17.126 60.912 -6.332 -2.031 0.008 C20 CC9 26
CC9 C21 C21 C 0 1 Y N N N N N 29.084 18.171 60.715 -5.080 -1.458 0.003 C21 CC9 27
CC9 H1 H1 H 0 1 N N N N N N 23.850 18.476 55.542 2.608 -1.307 -0.008 H1 CC9 28
CC9 H2 H2 H 0 1 N N N N N N 21.815 16.355 55.326 3.517 1.626 -0.007 H2 CC9 29
CC9 H3 H3 H 0 1 N N N N N N 20.197 17.064 53.685 5.999 1.819 -0.007 H3 CC9 30
CC9 H4 H4 H 0 1 N N N N N N 18.428 17.487 50.129 7.701 2.644 -0.896 H4 CC9 31
CC9 H5 H5 H 0 1 N N N N N N 20.127 18.008 49.870 7.701 2.642 0.884 H5 CC9 32
CC9 H6 H6 H 0 1 N N N N N N 19.766 16.635 50.972 9.228 2.857 -0.005 H6 CC9 33
CC9 H7 H7 H 0 1 N N N N N N 21.410 21.677 51.278 9.056 -1.968 0.874 H7 CC9 34
CC9 H8 H8 H 0 1 N N N N N N 22.876 21.244 52.859 6.432 -3.106 -0.010 H8 CC9 35
CC9 H9 H9 H 0 1 N N N N N N 23.502 19.685 54.647 4.200 -2.083 -0.003 H9 CC9 36
CC9 H10 H10 H 0 1 N N N N N N 25.815 17.097 57.616 -0.003 -1.138 -0.900 H10 CC9 37
CC9 H11 H11 H 0 1 N N N N N N 25.437 18.156 56.215 0.003 -1.146 0.879 H11 CC9 38
CC9 H13 H13 H 0 1 N N N N N N 26.661 17.618 58.192 -2.608 -1.307 -0.004 H13 CC9 39
CC9 H14 H14 H 0 1 N N N N N N 27.016 19.860 60.068 -3.517 1.626 0.012 H14 CC9 40
CC9 H16 H16 H 0 1 N N N N N N 27.251 16.640 58.400 -5.999 1.819 0.011 H16 CC9 41
CC9 H17 H17 H 0 1 N N N N N N 28.559 13.239 56.811 -7.702 2.644 -0.878 H17 CC9 42
CC9 H18 H18 H 0 1 N N N N N N 29.004 14.930 56.401 -9.228 2.857 0.013 H18 CC9 43
CC9 H19 H19 H 0 1 N N N N N N 30.164 13.887 57.292 -7.701 2.643 0.902 H19 CC9 44
CC9 H20 H20 H 0 1 N N N N N N 31.209 15.455 61.371 -9.056 -1.966 -0.874 H20 CC9 45
CC9 H21 H21 H 0 1 N N N N N N 30.677 17.234 61.636 -6.432 -3.106 0.007 H21 CC9 46
CC9 H22 H22 H 0 1 N N N N N N 29.232 19.130 61.188 -4.200 -2.083 -0.002 H22 CC9 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CC9 C9 O3 SING N N 1
CC9 O2 C7 SING N N 2
CC9 O3 C8 SING N N 3
CC9 C7 C8 DOUB Y N 4
CC9 C7 C6 SING Y N 5
CC9 C8 C10 SING Y N 6
CC9 C6 C5 DOUB Y N 7
CC9 C10 C4 DOUB Y N 8
CC9 C5 C4 SING Y N 9
CC9 C4 C3 SING N N 10
CC9 C3 C2 DOUB N E 11
CC9 C2 C1 SING N N 12
CC9 C1 C11 SING N N 13
CC9 C1 O1 DOUB N N 14
CC9 C18 O5 SING N N 15
CC9 C11 C12 SING N N 16
CC9 C12 O4 DOUB N N 17
CC9 C12 C13 SING N N 18
CC9 O5 C17 SING N N 19
CC9 C13 C14 DOUB N E 20
CC9 C16 C17 DOUB Y N 21
CC9 C16 C15 SING Y N 22
CC9 C17 C19 SING Y N 23
CC9 C14 C15 SING N N 24
CC9 C15 C21 DOUB Y N 25
CC9 C19 O6 SING N N 26
CC9 C19 C20 DOUB Y N 27
CC9 C21 C20 SING Y N 28
CC9 C2 H1 SING N N 29
CC9 C3 H2 SING N N 30
CC9 C10 H3 SING N N 31
CC9 C9 H4 SING N N 32
CC9 C9 H5 SING N N 33
CC9 C9 H6 SING N N 34
CC9 O2 H7 SING N N 35
CC9 C6 H8 SING N N 36
CC9 C5 H9 SING N N 37
CC9 C11 H10 SING N N 38
CC9 C11 H11 SING N N 39
CC9 C13 H13 SING N N 40
CC9 C14 H14 SING N N 41
CC9 C16 H16 SING N N 42
CC9 C18 H17 SING N N 43
CC9 C18 H18 SING N N 44
CC9 C18 H19 SING N N 45
CC9 O6 H20 SING N N 46
CC9 C20 H21 SING N N 47
CC9 C21 H22 SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CC9 SMILES ACDLabs 12.01 O=C(\C=C\c1ccc(O)c(OC)c1)CC(=O)\C=C\c2cc(OC)c(O)cc2
CC9 InChI InChI 1.03 InChI=1S/C21H20O6/c1-26-20-11-14(5-9-18(20)24)3-7-16(22)13-17(23)8-4-15-6-10-19(25)21(12-15)27-2/h3-12,24-25H,13H2,1-2H3/b7-3+,8-4+
CC9 InChIKey InChI 1.03 VFLDPWHFBUODDF-FCXRPNKRSA-N
CC9 SMILES_CANONICAL CACTVS 3.370 COc1cc(\C=C\C(=O)CC(=O)\C=C\c2ccc(O)c(OC)c2)ccc1O
CC9 SMILES CACTVS 3.370 COc1cc(C=CC(=O)CC(=O)C=Cc2ccc(O)c(OC)c2)ccc1O
CC9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 COc1c(ccc(c1)/C=C/C(=O)CC(=O)/C=C/c2cc(c(cc2)O)OC)O
CC9 SMILES "OpenEye OEToolkits" 1.7.6 COc1cc(ccc1O)C=CC(=O)CC(=O)C=Cc2ccc(c(c2)OC)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CC9 "SYSTEMATIC NAME" ACDLabs 12.01 (1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione
CC9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (1E,6E)-1,7-bis(3-methoxy-4-oxidanyl-phenyl)hepta-1,6-diene-3,5-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CC9 'Create component' 2013-04-19 RCSB
CC9 'Initial release' 2019-08-28 RCSB
CC9 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id CC9
_pdbx_chem_comp_synonyms.name (1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id CC9
_pdbe_chem_comp_drugbank_details.drugbank_id DB11672
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Curcumin
_pdbe_chem_comp_drugbank_details.description
'Curcumin, also known as diferuloylmethane, is an active component in the golden spice turmeric (Curcuma longa) and in [Curcuma xanthorrhiza oil]. It is a highly pleiotropic molecule that exhibits antibacterial, anti-inflammatory, hypoglycemic, antioxidant, wound-healing, and antimicrobial activities [A33166]. Due to these properties, curcumin has been investigated for the treatment and supportive care of clinical conditions including proteinuria, breast cancer, multiple myeloma, depression, and Non Small Cell Lung Cancer (NSCLC). Despite proven efficacy against numerous experimental models, poor bioavailability due to poor absorption, rapid metabolism, and rapid systemic elimination have been shown to limit the therapeutic efficacy of curcumin [A33166]. Curcumin is under investigation for the treatment and supportive care of various clinical conditions including mucositis, rectal cancer, prostate cancer, chronic schizophrenia, and Mild Cognitive Impairment (MCI) [A33166].'
_pdbe_chem_comp_drugbank_details.cas_number 458-37-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Curcumin acts as a scavenger of oxygen species, such as hydroxyl radical, superoxide anion, and singlet oxygen and inhibit lipid peroxidation as well as peroxide-induced DNA damage [F114]. Curcumin mediates potent anti-inflammatory agent and anti-carcinogenic actions via modulating various signalling molecules. It suppresses a number of key elements in cellular signal transduction pathways pertinent to growth, differentiation, and malignant transformation; it was demonstrated _in vitro_ that curcumin inhibits protein kinases, c-Jun/AP-1 activation, prostaglandin biosynthesis, and the activity and expression of the enzyme cyclooxygenase (COX)-2 [F114].'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
CC9 (1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,6-diene-3,5-dione wwPDB ?
CC9 Curcumin DrugBank ?
CC9 Diferuloylmethane DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id CC9
_pdbe_chem_comp_drugbank_classification.drugbank_id DB11672
_pdbe_chem_comp_drugbank_classification.parent Curcuminoids
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Diarylheptanoids
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as curcuminoids. These are aromatic compounds containing a curcumin moiety, which is composed of two aryl buten-2-one (feruloyl) chromophores joined by a methylene group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
CC9 DB11672 'Amyloid-beta precursor protein' Humans P05067 unknown 1
CC9 DB11672 'Carbonic anhydrase 4' Humans P22748 unknown 2
CC9 DB11672 'Prostaglandin G/H synthase 2' Humans P35354 unknown 3
CC9 DB11672 'Matrix metalloproteinase-9' Humans P14780 unknown 4
CC9 DB11672 'Prostaglandin G/H synthase 1' Humans P23219 unknown 5
CC9 DB11672 'Xanthine dehydrogenase/oxidase' Humans P47989 unknown 6
CC9 DB11672 'DNA (cytosine-5)-methyltransferase 3B' Humans Q9UBC3 unknown 7
CC9 DB11672 'Collagenase 3' Humans P45452 unknown 8
CC9 DB11672 'Carbonic anhydrase 1' Humans P00915 unknown 9
CC9 DB11672 'Carbonic anhydrase 14' Humans Q9ULX7 unknown 10
CC9 DB11672 'Nitric oxide synthase, inducible' Humans P35228 unknown 11
CC9 DB11672 'Cytochrome P450 3A4' Humans P08684 unknown 12
CC9 DB11672 'Carbonic anhydrase 9' Humans Q16790 unknown 13
CC9 DB11672 'Carbonic anhydrase 6' Humans P23280 unknown 14
CC9 DB11672 'Carbonic anhydrase 12' Humans O43570 unknown 15
CC9 DB11672 'Carbonic anhydrase 2' Humans P00918 unknown 16
CC9 DB11672 'Peroxisome proliferator-activated receptor gamma' Humans P37231 unknown 17
CC9 DB11672 'Vitamin D3 receptor' Humans P11473 unknown 18
CC9 DB11672 'ATP-binding cassette sub-family C member 5' Humans O15440 unknown 19
CC9 DB11672 'Carbonyl reductase [NADPH] 1' Humans P16152 unknown 20
CC9 DB11672 'Glutathione S-transferase P' Humans P09211 unknown 21
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CC9 O1 O 6.897 0.233 1
CC9 C1 C 8.196 -0.517 2
CC9 C2 C 8.196 -2.018 3
CC9 C3 C 6.897 -2.768 4
CC9 C4 C 6.897 -4.268 5
CC9 C10 C 5.598 -5.018 6
CC9 C8 C 5.598 -6.518 7
CC9 O3 O 4.299 -7.268 8
CC9 C9 C 3.000 -6.518 9
CC9 C7 C 6.897 -7.268 10
CC9 O2 O 6.897 -8.768 11
CC9 C6 C 8.196 -6.518 12
CC9 C5 C 8.196 -5.018 13
CC9 C11 C 9.495 0.233 14
CC9 C12 C 9.495 1.732 15
CC9 O4 O 8.196 2.482 16
CC9 C13 C 10.794 2.482 17
CC9 C14 C 10.794 3.982 18
CC9 C15 C 12.093 4.732 19
CC9 C16 C 12.093 6.232 20
CC9 C17 C 13.392 6.982 21
CC9 O5 O 13.392 8.482 22
CC9 C18 C 12.093 9.232 23
CC9 C19 C 14.691 6.232 24
CC9 O6 O 15.990 6.982 25
CC9 C20 C 14.691 4.732 26
CC9 C21 C 13.392 3.982 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CC9 C9 O3 SINGLE NONE 1
CC9 O2 C7 SINGLE NONE 2
CC9 O3 C8 SINGLE NONE 3
CC9 C7 C8 SINGLE NONE 4
CC9 C7 C6 DOUBLE NONE 5
CC9 C8 C10 DOUBLE NONE 6
CC9 C6 C5 SINGLE NONE 7
CC9 C10 C4 SINGLE NONE 8
CC9 C5 C4 DOUBLE NONE 9
CC9 C4 C3 SINGLE ENDUPRIGHT 10
CC9 C3 C2 DOUBLE NONE 11
CC9 C2 C1 SINGLE ENDUPRIGHT 12
CC9 C1 C11 SINGLE NONE 13
CC9 C1 O1 DOUBLE NONE 14
CC9 C18 O5 SINGLE NONE 15
CC9 C11 C12 SINGLE NONE 16
CC9 C12 O4 DOUBLE NONE 17
CC9 C12 C13 SINGLE ENDUPRIGHT 18
CC9 O5 C17 SINGLE NONE 19
CC9 C13 C14 DOUBLE NONE 20
CC9 C16 C17 DOUBLE NONE 21
CC9 C16 C15 SINGLE NONE 22
CC9 C17 C19 SINGLE NONE 23
CC9 C14 C15 SINGLE ENDUPRIGHT 24
CC9 C15 C21 DOUBLE NONE 25
CC9 C19 O6 SINGLE NONE 26
CC9 C19 C20 DOUBLE NONE 27
CC9 C21 C20 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CC9 MurckoScaffold S1 scaffold O=C(/C=C/c1ccccc1)CC(=O)/C=C/c1ccccc1 InChI=1S/C19H16O2/c20-18(13-11-16-7-3-1-4-8-16)15-19(21)14-12-17-9-5-2-6-10-17/h1-14H,15H2/b13-11+,14-12+ UXLWOYFDJVFCBR-PHEQNACWSA-N
CC9 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CC9 O1 S1 1
CC9 C1 S1 1
CC9 C2 S1 1
CC9 C3 S1 1
CC9 C4 S1 1
CC9 C10 S1 1
CC9 C8 S1 1
CC9 C7 S1 1
CC9 C6 S1 1
CC9 C5 S1 1
CC9 C11 S1 1
CC9 C12 S1 1
CC9 O4 S1 1
CC9 C13 S1 1
CC9 C14 S1 1
CC9 C15 S1 1
CC9 C16 S1 1
CC9 C17 S1 1
CC9 C19 S1 1
CC9 C20 S1 1
CC9 C21 S1 1
CC9 C4 F1 1
CC9 C10 F1 1
CC9 C8 F1 1
CC9 C7 F1 1
CC9 C6 F1 1
CC9 C5 F1 1
CC9 C15 F1 2
CC9 C16 F1 2
CC9 C17 F1 2
CC9 C19 F1 2
CC9 C20 F1 2
CC9 C21 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id CC9
_pdbe_chem_comp_rdkit_properties.exactmw 368.126
_pdbe_chem_comp_rdkit_properties.amw 368.385
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 184.805
_pdbe_chem_comp_rdkit_properties.tpsa 93.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.411
_pdbe_chem_comp_rdkit_properties.CrippenMR 99.045
_pdbe_chem_comp_rdkit_properties.chi0v 12.949
_pdbe_chem_comp_rdkit_properties.chi1v 6.633
_pdbe_chem_comp_rdkit_properties.chi2v 2.525
_pdbe_chem_comp_rdkit_properties.chi3v 2.525
_pdbe_chem_comp_rdkit_properties.chi4v 1.428
_pdbe_chem_comp_rdkit_properties.chi0n 32.949
_pdbe_chem_comp_rdkit_properties.chi1n 16.449
_pdbe_chem_comp_rdkit_properties.chi2n 2.525
_pdbe_chem_comp_rdkit_properties.chi3n 2.525
_pdbe_chem_comp_rdkit_properties.chi4n 1.428
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.540
_pdbe_chem_comp_rdkit_properties.kappa1 5.987
_pdbe_chem_comp_rdkit_properties.kappa2 9.239
_pdbe_chem_comp_rdkit_properties.kappa3 5.743
_pdbe_chem_comp_rdkit_properties.Phi 2.049
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CC9 UniChem DrugBank DB11672
CC9 UniChem 'Guide to Pharmacology' 7000
CC9 UniChem 'PubChem DOTF' 12013839
CC9 UniChem ChEBI 3962
CC9 UniChem ZINC ZINC000000899824
CC9 UniChem fdasrs IT942ZTH98
CC9 UniChem HMDB HMDB0002269
CC9 UniChem NMRShiftDB 60024219
CC9 UniChem LINCS LSM-43083
CC9 UniChem ACTor 15845-47-3
CC9 UniChem ACTor 8024-37-1
CC9 UniChem Nikkaji J5.762B
CC9 UniChem BindingDb 50140172
CC9 UniChem MetaboLights MTBLC3962
CC9 UniChem BRENDA 14060
CC9 UniChem BRENDA 226236
CC9 UniChem BRENDA 696
CC9 UniChem Rhea 3962
CC9 UniChem ChemicalBook CB3167375
CC9 UniChem ChemicalBook CB4183426
CC9 UniChem 'Probes And Drugs' PD011359
CC9 UniChem CCDC QUMDIN
CC9 UniChem 'EPA CompTox Dashboard' DTXSID8031077
CC9 UniChem eMolecules 494487
CC9 UniChem SureChEMBL SCHEMBL8440
CC9 UniChem 'PubChem TPHARMA' 14803853
CC9 UniChem PubChem 969516
CC9 UniChem ACTor 458-37-7
CC9 UniChem Nikkaji J1.391.353F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CC9 O1 1.334 -2.958 -0.690 ETKDGv3 1
CC9 C1 1.025 -1.765 -0.420 ETKDGv3 2
CC9 C2 2.048 -0.700 -0.430 ETKDGv3 3
CC9 C3 3.343 -0.955 -0.671 ETKDGv3 4
CC9 C4 4.404 0.082 -0.682 ETKDGv3 5
CC9 C10 5.808 -0.350 -0.475 ETKDGv3 6
CC9 C8 6.818 0.545 -0.492 ETKDGv3 7
CC9 O3 8.158 0.170 -0.295 ETKDGv3 8
CC9 C9 8.606 -1.161 -0.059 ETKDGv3 9
CC9 C7 6.512 1.978 -0.728 ETKDGv3 10
CC9 O2 7.529 2.931 -0.749 ETKDGv3 11
CC9 C6 5.248 2.369 -0.927 ETKDGv3 12
CC9 C5 4.148 1.385 -0.911 ETKDGv3 13
CC9 C11 -0.410 -1.425 -0.130 ETKDGv3 14
CC9 C12 -1.122 -0.863 -1.338 ETKDGv3 15
CC9 O4 -0.595 -0.961 -2.480 ETKDGv3 16
CC9 C13 -2.448 -0.217 -1.237 ETKDGv3 17
CC9 C14 -3.177 -0.201 -0.110 ETKDGv3 18
CC9 C15 -4.515 0.431 -0.002 ETKDGv3 19
CC9 C16 -5.423 -0.030 1.078 ETKDGv3 20
CC9 C17 -6.644 0.521 1.238 ETKDGv3 21
CC9 O5 -7.530 0.105 2.246 ETKDGv3 22
CC9 C18 -7.259 -0.920 3.197 ETKDGv3 23
CC9 C19 -7.075 1.607 0.321 ETKDGv3 24
CC9 O6 -8.331 2.197 0.455 ETKDGv3 25
CC9 C20 -6.253 2.033 -0.645 ETKDGv3 26
CC9 C21 -4.917 1.430 -0.812 ETKDGv3 27
CC9 H1 1.720 0.307 -0.210 ETKDGv3 28
CC9 H2 3.655 -1.981 -0.825 ETKDGv3 29
CC9 H3 6.004 -1.400 -0.305 ETKDGv3 30
CC9 H4 8.150 -1.558 0.873 ETKDGv3 31
CC9 H5 8.343 -1.811 -0.920 ETKDGv3 32
CC9 H6 9.709 -1.157 0.059 ETKDGv3 33
CC9 H7 8.499 2.678 -0.604 ETKDGv3 34
CC9 H8 5.023 3.413 -1.104 ETKDGv3 35
CC9 H9 3.149 1.742 -1.116 ETKDGv3 36
CC9 H10 -0.437 -0.682 0.697 ETKDGv3 37
CC9 H11 -0.945 -2.337 0.211 ETKDGv3 38
CC9 H13 -2.843 0.223 -2.143 ETKDGv3 39
CC9 H14 -2.812 -0.720 0.767 ETKDGv3 40
CC9 H16 -5.085 -0.823 1.732 ETKDGv3 41
CC9 H17 -8.136 -1.033 3.867 ETKDGv3 42
CC9 H18 -6.375 -0.648 3.811 ETKDGv3 43
CC9 H19 -7.083 -1.886 2.678 ETKDGv3 44
CC9 H20 -8.983 1.905 1.173 ETKDGv3 45
CC9 H21 -6.563 2.829 -1.311 ETKDGv3 46
CC9 H22 -4.272 1.833 -1.580 ETKDGv3 47
#