data_BU1
#
_chem_comp.id BU1
_chem_comp.name 1,4-BUTANEDIOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H10 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 90.121
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BU1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BK9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BU1 C1 C1 C 0 1 N N N N N N 32.246 52.552 7.196 0.518 0.000 1.854 C1 BU1 1
BU1 C2 C2 C 0 1 N N N N N N 31.388 51.399 7.623 -0.415 0.000 0.642 C2 BU1 2
BU1 C3 C3 C 0 1 N N N N N N 31.149 51.401 9.106 0.415 0.000 -0.642 C3 BU1 3
BU1 C4 C4 C 0 1 N N N N N N 30.227 50.221 9.359 -0.518 0.000 -1.854 C4 BU1 4
BU1 O5 O5 O 0 1 N N N N N N 32.693 52.313 5.872 -0.257 0.000 3.053 O5 BU1 5
BU1 O6 O6 O 0 1 N N N N N N 29.842 50.128 10.733 0.257 0.000 -3.053 O6 BU1 6
BU1 H11 1H1 H 0 1 N N N N N N 31.728 53.533 7.302 1.147 0.890 1.828 H11 BU1 7
BU1 H12 2H1 H 0 1 N N N N N N 33.086 52.745 7.903 1.147 -0.890 1.828 H12 BU1 8
BU1 H21 1H2 H 0 1 N N N N N N 30.427 51.376 7.057 -1.044 -0.890 0.668 H21 BU1 9
BU1 H22 2H2 H 0 1 N N N N N N 31.814 50.427 7.281 -1.044 0.890 0.668 H22 BU1 10
BU1 H31 1H3 H 0 1 N N N N N N 32.083 51.381 9.713 1.044 0.890 -0.668 H31 BU1 11
BU1 H32 2H3 H 0 1 N N N N N N 30.760 52.369 9.499 1.044 -0.890 -0.668 H32 BU1 12
BU1 H41 1H4 H 0 1 N N N N N N 29.335 50.253 8.690 -1.147 -0.890 -1.828 H41 BU1 13
BU1 H42 2H4 H 0 1 N N N N N N 30.681 49.268 9.000 -1.147 0.890 -1.828 H42 BU1 14
BU1 HO5 HO5 H 0 1 N N N N N N 33.488 51.770 5.897 0.368 0.000 3.791 HO5 BU1 15
BU1 HO6 HO6 H 0 1 N N N N N N 29.215 49.404 10.833 -0.368 0.000 -3.791 HO6 BU1 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BU1 C1 C2 SING N N 1
BU1 C1 O5 SING N N 2
BU1 C1 H11 SING N N 3
BU1 C1 H12 SING N N 4
BU1 C2 C3 SING N N 5
BU1 C2 H21 SING N N 6
BU1 C2 H22 SING N N 7
BU1 C3 C4 SING N N 8
BU1 C3 H31 SING N N 9
BU1 C3 H32 SING N N 10
BU1 C4 O6 SING N N 11
BU1 C4 H41 SING N N 12
BU1 C4 H42 SING N N 13
BU1 O5 HO5 SING N N 14
BU1 O6 HO6 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BU1 SMILES ACDLabs 10.04 OCCCCO
BU1 SMILES_CANONICAL CACTVS 3.341 OCCCCO
BU1 SMILES CACTVS 3.341 OCCCCO
BU1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(CCO)CO
BU1 SMILES "OpenEye OEToolkits" 1.5.0 C(CCO)CO
BU1 InChI InChI 1.03 InChI=1S/C4H10O2/c5-3-1-2-4-6/h5-6H,1-4H2
BU1 InChIKey InChI 1.03 WERYXYBDKMZEQL-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BU1 "SYSTEMATIC NAME" ACDLabs 10.04 butane-1,4-diol
BU1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 butane-1,4-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BU1 'Create component' 1999-07-08 RCSB
BU1 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id BU1
_pdbe_chem_comp_drugbank_details.drugbank_id DB01955
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 1,4-Butanediol
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 110-63-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id BU1
_pdbe_chem_comp_synonyms.name 1,4-Butanediol
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BU1
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01955
_pdbe_chem_comp_drugbank_classification.parent 'Primary alcohols'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as primary alcohols. These are compounds comprising the primary alcohol functional group, with the general structure RCOH (R=alkyl, aryl).'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
BU1 DB01955 'Phospholipase A2, membrane associated' Humans P14555 yes 1
BU1 DB01955 'Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase' Humans Q9UKM7 unknown 2
BU1 DB01955 'Group IIE secretory phospholipase A2' Humans Q9NZK7 unknown 3
BU1 DB01955 'Ribosomal small subunit pseudouridine synthase A' 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' P45124 unknown 4
BU1 DB01955 'Penicillin-insensitive murein endopeptidase' 'Escherichia coli (strain K12)' P0C0T5 unknown 5
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BU1 C1 C 9.002 -0.375 1
BU1 C2 C 7.702 0.375 2
BU1 C3 C 6.404 -0.375 3
BU1 C4 C 5.104 0.375 4
BU1 O5 O 10.301 0.375 5
BU1 O6 O 3.805 -0.375 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BU1 C1 C2 SINGLE NONE 1
BU1 C1 O5 SINGLE NONE 2
BU1 C2 C3 SINGLE NONE 3
BU1 C3 C4 SINGLE NONE 4
BU1 C4 O6 SINGLE NONE 5
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id BU1
_pdbe_chem_comp_rdkit_properties.exactmw 90.068
_pdbe_chem_comp_rdkit_properties.amw 90.122
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 51.646
_pdbe_chem_comp_rdkit_properties.tpsa 40.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.249
_pdbe_chem_comp_rdkit_properties.CrippenMR 23.406
_pdbe_chem_comp_rdkit_properties.chi0v 2.816
_pdbe_chem_comp_rdkit_properties.chi1v 1.158
_pdbe_chem_comp_rdkit_properties.chi2v 0.165
_pdbe_chem_comp_rdkit_properties.chi3v 0.165
_pdbe_chem_comp_rdkit_properties.chi4v 0.051
_pdbe_chem_comp_rdkit_properties.chi0n 12.816
_pdbe_chem_comp_rdkit_properties.chi1n 5.975
_pdbe_chem_comp_rdkit_properties.chi2n 0.165
_pdbe_chem_comp_rdkit_properties.chi3n 0.165
_pdbe_chem_comp_rdkit_properties.chi4n 0.051
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.080
_pdbe_chem_comp_rdkit_properties.kappa1 0.644
_pdbe_chem_comp_rdkit_properties.kappa2 4.920
_pdbe_chem_comp_rdkit_properties.kappa3 3.920
_pdbe_chem_comp_rdkit_properties.Phi 0.528
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BU1 UniChem DrugBank DB01955
BU1 UniChem ChEBI 41189
BU1 UniChem ZINC ZINC000001599375
BU1 UniChem fdasrs 7XOO2LE6G3
BU1 UniChem HMDB HMDB0244201
BU1 UniChem NMRShiftDB 10005612
BU1 UniChem ACTor 110-63-4
BU1 UniChem ACTor 28324-25-6
BU1 UniChem BRENDA 105622
BU1 UniChem BRENDA 29826
BU1 UniChem BRENDA 4462
BU1 UniChem ChemicalBook CB4452184
BU1 UniChem ChemicalBook CB71074836
BU1 UniChem 'Probes And Drugs' PD008271
BU1 UniChem CCDC QATTIO
BU1 UniChem 'EPA CompTox Dashboard' DTXSID2024666
BU1 UniChem eMolecules 483162
BU1 UniChem SureChEMBL SCHEMBL15086
BU1 UniChem 'PubChem TPHARMA' 15194210
BU1 UniChem PubChem 8064
BU1 UniChem Mcule MCULE-2010022287
BU1 UniChem Nikkaji J5.097K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BU1 C1 1.850 -0.751 -0.086 ETKDGv3 1
BU1 C2 0.363 -0.689 0.276 ETKDGv3 2
BU1 C3 -0.322 0.538 -0.344 ETKDGv3 3
BU1 C4 -1.817 0.573 -0.027 ETKDGv3 4
BU1 O5 2.541 0.351 0.438 ETKDGv3 5
BU1 O6 -2.014 0.740 1.350 ETKDGv3 6
BU1 H11 2.289 -1.698 0.303 ETKDGv3 7
BU1 H12 1.967 -0.758 -1.191 ETKDGv3 8
BU1 H21 0.257 -0.664 1.383 ETKDGv3 9
BU1 H22 -0.130 -1.613 -0.097 ETKDGv3 10
BU1 H31 -0.195 0.511 -1.449 ETKDGv3 11
BU1 H32 0.151 1.470 0.036 ETKDGv3 12
BU1 H41 -2.299 -0.371 -0.370 ETKDGv3 13
BU1 H42 -2.280 1.424 -0.573 ETKDGv3 14
BU1 HO5 2.636 0.190 1.413 ETKDGv3 15
BU1 HO6 -2.997 0.748 1.488 ETKDGv3 16
#