data_BEG
#
_chem_comp.id BEG
_chem_comp.name "2,5-DIBENZYLOXY-3-HYDROXY-HEXANEDIOIC ACID BIS-[(2-HYDROXY-INDAN-1-YL)-AMIDE]"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H40 N2 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "INHIBITOR BEA425"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-10-05
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 636.733
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BEG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1D4I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BEG C01 C01 C 0 1 Y N N N N N 9.764 24.084 2.234 0.511 -4.264 1.382 C01 BEG 1
BEG C02 C02 C 0 1 Y N N N N N 9.044 25.251 1.867 -0.384 -4.971 2.164 C02 BEG 2
BEG C03 C03 C 0 1 Y N N N N N 7.641 25.363 2.003 0.067 -5.679 3.262 C03 BEG 3
BEG C04 C04 C 0 1 Y N N N N N 6.904 24.272 2.523 1.412 -5.681 3.579 C04 BEG 4
BEG C05 C05 C 0 1 Y N N N N N 7.585 23.088 2.893 2.307 -4.975 2.797 C05 BEG 5
BEG C06 C06 C 0 1 Y N N N N N 8.994 22.996 2.747 1.857 -4.270 1.696 C06 BEG 6
BEG C07 C07 C 0 1 Y N N N N N 16.298 22.149 8.773 -1.105 3.508 2.064 C07 BEG 7
BEG C08 C08 C 0 1 Y N N N N N 15.570 21.130 9.459 -0.657 4.688 2.626 C08 BEG 8
BEG C09 C09 C 0 1 Y N N N N N 16.175 19.934 9.922 -1.233 5.162 3.790 C09 BEG 9
BEG C10 C10 C 0 1 Y N N N N N 17.561 19.729 9.711 -2.259 4.456 4.390 C10 BEG 10
BEG C11 C11 C 0 1 Y N N N N N 18.315 20.725 9.045 -2.708 3.276 3.827 C11 BEG 11
BEG C12 C12 C 0 1 Y N N N N N 17.690 21.914 8.586 -2.134 2.804 2.661 C12 BEG 12
BEG C13 C13 C 0 1 N N N N N N 15.560 23.358 8.195 -0.477 2.991 0.795 C13 BEG 13
BEG O14 O14 O 0 1 N N N N N N 14.526 23.015 7.272 0.623 2.138 1.121 O14 BEG 14
BEG C23 C23 C 0 1 N N N N N N 11.287 24.077 2.148 0.019 -3.493 0.185 C23 BEG 15
BEG O22 O22 O 0 1 N N N N N N 11.920 23.554 3.313 -0.318 -2.162 0.582 O22 BEG 16
BEG C15 C15 C 0 1 N N R N N N 15.031 22.699 5.968 1.196 1.712 -0.116 C15 BEG 17
BEG C16 C16 C 0 1 N N N N N N 13.991 23.019 4.924 0.926 0.219 -0.315 C16 BEG 18
BEG C17 C17 C 0 1 N N R N N N 13.502 24.425 5.006 -0.577 -0.010 -0.488 C17 BEG 19
BEG O24 O24 O 0 1 N N N N N N 14.483 25.178 4.305 -1.020 0.625 -1.689 O24 BEG 20
BEG C18 C18 C 0 1 N N R N N N 12.117 24.538 4.353 -0.858 -1.511 -0.571 C18 BEG 21
BEG C19 C19 C 0 1 N N N N N N 10.944 24.485 5.324 -2.346 -1.741 -0.625 C19 BEG 22
BEG O20 O20 O 0 1 N N N N N N 10.696 23.492 6.004 -2.904 -2.319 0.283 O20 BEG 23
BEG N21 N21 N 0 1 N N N N N N 10.140 25.606 5.373 -3.057 -1.305 -1.684 N21 BEG 24
BEG C25 C25 C 0 1 N N N N N N 15.140 21.202 5.836 2.683 1.955 -0.091 C25 BEG 25
BEG O26 O26 O 0 1 N N N N N N 14.193 20.464 6.087 3.214 2.360 0.921 O26 BEG 26
BEG N27 N27 N 0 1 N N N N N N 16.358 20.692 5.436 3.422 1.722 -1.194 N27 BEG 27
BEG C28 C28 C 0 1 N N S N N N 16.620 19.277 5.261 4.868 1.958 -1.170 C28 BEG 28
BEG C29 C29 C 0 1 Y N N N N N 16.571 18.847 3.820 5.594 0.722 -0.684 C29 BEG 29
BEG C30 C30 C 0 1 Y N N N N N 17.534 17.849 3.551 6.701 0.489 -1.482 C30 BEG 30
BEG C31 C31 C 0 1 Y N N N N N 15.732 19.314 2.777 5.310 -0.133 0.366 C31 BEG 31
BEG C32 C32 C 0 1 Y N N N N N 15.863 18.764 1.468 6.128 -1.215 0.623 C32 BEG 32
BEG C33 C33 C 0 1 Y N N N N N 16.833 17.755 1.212 7.235 -1.448 -0.172 C33 BEG 33
BEG C34 C34 C 0 1 N N R N N N 18.018 18.781 5.673 5.394 2.203 -2.600 C34 BEG 34
BEG O35 O35 O 0 1 N N N N N N 18.937 19.823 5.379 4.562 1.557 -3.565 O35 BEG 35
BEG C36 C36 C 0 1 Y N N N N N 17.679 17.289 2.256 7.520 -0.597 -1.222 C36 BEG 36
BEG C37 C37 C 0 1 N N N N N N 18.309 17.538 4.794 6.794 1.554 -2.553 C37 BEG 37
BEG C38 C38 C 0 1 N N S N N N 8.968 25.778 6.216 -4.504 -1.528 -1.737 C38 BEG 38
BEG C39 C39 C 0 1 Y N N N N N 9.256 26.507 7.503 -5.236 -0.395 -1.052 C39 BEG 39
BEG C40 C40 C 0 1 Y N N N N N 8.181 27.361 7.860 -6.322 -0.010 -1.819 C40 BEG 40
BEG C41 C41 C 0 1 Y N N N N N 10.408 26.446 8.332 -4.974 0.252 0.143 C41 BEG 41
BEG C42 C42 C 0 1 Y N N N N N 10.467 27.240 9.518 -5.793 1.277 0.574 C42 BEG 42
BEG C43 C43 C 0 1 Y N N N N N 9.377 28.089 9.863 -6.879 1.661 -0.191 C43 BEG 43
BEG C44 C44 C 0 1 N N R N N N 7.849 26.663 5.625 -4.996 -1.504 -3.200 C44 BEG 44
BEG O45 O45 O 0 1 N N N N N N 8.482 27.684 4.868 -4.137 -0.700 -4.012 O45 BEG 45
BEG C46 C46 C 0 1 Y N N N N N 8.224 28.156 9.035 -7.142 1.018 -1.385 C46 BEG 46
BEG C47 C47 C 0 1 N N N N N N 7.093 27.273 6.832 -6.393 -0.861 -3.069 C47 BEG 47
BEG H021 1H02 H 0 0 N N N N N N 9.592 26.091 1.466 -1.435 -4.970 1.917 H021 BEG 48
BEG H031 1H03 H 0 0 N N N N N N 7.136 26.273 1.713 -0.632 -6.231 3.873 H031 BEG 49
BEG H041 1H04 H 0 0 N N N N N N 5.832 24.343 2.636 1.764 -6.233 4.437 H041 BEG 50
BEG H051 1H05 H 0 0 N N N N N N 7.030 22.250 3.288 3.358 -4.976 3.044 H051 BEG 51
BEG H061 1H06 H 0 0 N N N N N N 9.495 22.082 3.030 2.556 -3.719 1.085 H061 BEG 52
BEG H081 1H08 H 0 0 N N N N N N 14.514 21.276 9.633 0.144 5.239 2.157 H081 BEG 53
BEG H091 1H09 H 0 0 N N N N N N 15.585 19.186 10.431 -0.882 6.084 4.230 H091 BEG 54
BEG H101 1H10 H 0 0 N N N N N N 18.037 18.823 10.055 -2.709 4.826 5.300 H101 BEG 55
BEG H111 1H11 H 0 0 N N N N N N 19.373 20.579 8.885 -3.509 2.724 4.297 H111 BEG 56
BEG H121 1H12 H 0 0 N N N N N N 18.286 22.660 8.082 -2.485 1.883 2.221 H121 BEG 57
BEG H131 1H13 H 0 0 N N N N N N 16.301 23.955 7.643 -0.121 3.830 0.198 H131 BEG 58
BEG H132 2H13 H 0 0 N N N N N N 15.103 23.909 9.030 -1.217 2.428 0.226 H132 BEG 59
BEG H231 1H23 H 0 0 N N N N N N 11.612 25.123 2.042 -0.863 -3.983 -0.227 H231 BEG 60
BEG H232 2H23 H 0 0 N N N N N N 11.579 23.453 1.290 0.803 -3.459 -0.572 H232 BEG 61
BEG H151 1H15 H 0 0 N N N N N N 15.977 23.246 5.842 0.749 2.274 -0.936 H151 BEG 62
BEG H161 1H16 H 0 0 N N N N N N 13.130 22.357 5.098 1.280 -0.333 0.555 H161 BEG 63
BEG H162 2H16 H 0 0 N N N N N N 14.438 22.865 3.931 1.451 -0.130 -1.205 H162 BEG 64
BEG H171 1H17 H 0 0 N N N N N N 13.379 24.785 6.038 -1.108 0.413 0.365 H171 BEG 65
BEG H241 1H24 H 0 0 N N N N N N 14.181 25.346 3.420 -0.526 0.223 -2.416 H241 BEG 66
BEG H181 1H18 H 0 0 N N N N N N 12.122 25.547 3.915 -0.394 -1.919 -1.469 H181 BEG 67
BEG H211 1H21 H 0 0 N N N N N N 10.386 26.369 4.775 -2.611 -0.843 -2.411 H211 BEG 68
BEG H271 1H27 H 0 0 N N N N N N 17.102 21.335 5.257 2.997 1.398 -2.003 H271 BEG 69
BEG H281 1H28 H 0 0 N N N N N N 15.833 18.860 5.906 5.101 2.810 -0.530 H281 BEG 70
BEG H311 1H31 H 0 0 N N N N N N 14.998 20.082 2.973 4.446 0.048 0.987 H311 BEG 71
BEG H321 1H32 H 0 0 N N N N N N 15.225 19.114 0.670 5.903 -1.880 1.444 H321 BEG 72
BEG H331 1H33 H 0 0 N N N N N N 16.927 17.341 0.219 7.876 -2.294 0.027 H331 BEG 73
BEG H341 1H34 H 0 0 N N N N N N 18.093 18.521 6.739 5.469 3.271 -2.808 H341 BEG 74
BEG H351 1H35 H 0 0 N N N N N N 19.142 20.299 6.175 4.942 1.747 -4.434 H351 BEG 75
BEG H361 1H36 H 0 0 N N N N N N 18.417 16.524 2.066 8.385 -0.779 -1.843 H361 BEG 76
BEG H371 1H37 H 0 0 N N N N N N 19.380 17.366 4.614 7.033 1.102 -3.516 H371 BEG 77
BEG H372 2H37 H 0 0 N N N N N N 17.969 16.606 5.270 7.546 2.296 -2.285 H372 BEG 78
BEG H381 1H38 H 0 0 N N N N N N 8.663 24.728 6.337 -4.756 -2.480 -1.269 H381 BEG 79
BEG H411 1H41 H 0 0 N N N N N N 11.234 25.803 8.067 -4.126 -0.047 0.741 H411 BEG 80
BEG H421 1H42 H 0 0 N N N N N N 11.339 27.196 10.154 -5.585 1.779 1.507 H421 BEG 81
BEG H431 1H43 H 0 0 N N N N N N 9.427 28.687 10.761 -7.520 2.462 0.144 H431 BEG 82
BEG H441 1H44 H 0 0 N N N N N N 7.150 26.110 4.981 -5.071 -2.515 -3.601 H441 BEG 83
BEG H451 1H45 H 0 0 N N N N N N 8.623 28.445 5.418 -4.496 -0.726 -4.909 H451 BEG 84
BEG H461 1H46 H 0 0 N N N N N N 7.396 28.799 9.295 -7.990 1.318 -1.982 H461 BEG 85
BEG H471 1H47 H 0 0 N N N N N N 6.612 28.237 6.612 -6.606 -0.239 -3.938 H471 BEG 86
BEG H472 2H47 H 0 0 N N N N N N 6.260 26.636 7.164 -7.155 -1.632 -2.958 H472 BEG 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BEG C01 C02 DOUB Y N 1
BEG C01 C06 SING Y N 2
BEG C01 C23 SING N N 3
BEG C02 C03 SING Y N 4
BEG C02 H021 SING N N 5
BEG C03 C04 DOUB Y N 6
BEG C03 H031 SING N N 7
BEG C04 C05 SING Y N 8
BEG C04 H041 SING N N 9
BEG C05 C06 DOUB Y N 10
BEG C05 H051 SING N N 11
BEG C06 H061 SING N N 12
BEG C07 C08 DOUB Y N 13
BEG C07 C12 SING Y N 14
BEG C07 C13 SING N N 15
BEG C08 C09 SING Y N 16
BEG C08 H081 SING N N 17
BEG C09 C10 DOUB Y N 18
BEG C09 H091 SING N N 19
BEG C10 C11 SING Y N 20
BEG C10 H101 SING N N 21
BEG C11 C12 DOUB Y N 22
BEG C11 H111 SING N N 23
BEG C12 H121 SING N N 24
BEG C13 O14 SING N N 25
BEG C13 H131 SING N N 26
BEG C13 H132 SING N N 27
BEG O14 C15 SING N N 28
BEG C23 O22 SING N N 29
BEG C23 H231 SING N N 30
BEG C23 H232 SING N N 31
BEG O22 C18 SING N N 32
BEG C15 C16 SING N N 33
BEG C15 C25 SING N N 34
BEG C15 H151 SING N N 35
BEG C16 C17 SING N N 36
BEG C16 H161 SING N N 37
BEG C16 H162 SING N N 38
BEG C17 O24 SING N N 39
BEG C17 C18 SING N N 40
BEG C17 H171 SING N N 41
BEG O24 H241 SING N N 42
BEG C18 C19 SING N N 43
BEG C18 H181 SING N N 44
BEG C19 O20 DOUB N N 45
BEG C19 N21 SING N N 46
BEG N21 C38 SING N N 47
BEG N21 H211 SING N N 48
BEG C25 O26 DOUB N N 49
BEG C25 N27 SING N N 50
BEG N27 C28 SING N N 51
BEG N27 H271 SING N N 52
BEG C28 C29 SING N N 53
BEG C28 C34 SING N N 54
BEG C28 H281 SING N N 55
BEG C29 C30 DOUB Y N 56
BEG C29 C31 SING Y N 57
BEG C30 C36 SING Y N 58
BEG C30 C37 SING N N 59
BEG C31 C32 DOUB Y N 60
BEG C31 H311 SING N N 61
BEG C32 C33 SING Y N 62
BEG C32 H321 SING N N 63
BEG C33 C36 DOUB Y N 64
BEG C33 H331 SING N N 65
BEG C34 O35 SING N N 66
BEG C34 C37 SING N N 67
BEG C34 H341 SING N N 68
BEG O35 H351 SING N N 69
BEG C36 H361 SING N N 70
BEG C37 H371 SING N N 71
BEG C37 H372 SING N N 72
BEG C38 C39 SING N N 73
BEG C38 C44 SING N N 74
BEG C38 H381 SING N N 75
BEG C39 C40 DOUB Y N 76
BEG C39 C41 SING Y N 77
BEG C40 C46 SING Y N 78
BEG C40 C47 SING N N 79
BEG C41 C42 DOUB Y N 80
BEG C41 H411 SING N N 81
BEG C42 C43 SING Y N 82
BEG C42 H421 SING N N 83
BEG C43 C46 DOUB Y N 84
BEG C43 H431 SING N N 85
BEG C44 O45 SING N N 86
BEG C44 C47 SING N N 87
BEG C44 H441 SING N N 88
BEG O45 H451 SING N N 89
BEG C46 H461 SING N N 90
BEG C47 H471 SING N N 91
BEG C47 H472 SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BEG SMILES ACDLabs 10.04 O=C(NC2c1ccccc1CC2O)C(OCc3ccccc3)CC(O)C(OCc4ccccc4)C(=O)NC6c5ccccc5CC6O
BEG SMILES_CANONICAL CACTVS 3.341 O[C@H](C[C@@H](OCc1ccccc1)C(=O)N[C@@H]2[C@H](O)Cc3ccccc23)[C@@H](OCc4ccccc4)C(=O)N[C@@H]5[C@H](O)Cc6ccccc56
BEG SMILES CACTVS 3.341 O[CH](C[CH](OCc1ccccc1)C(=O)N[CH]2[CH](O)Cc3ccccc23)[CH](OCc4ccccc4)C(=O)N[CH]5[CH](O)Cc6ccccc56
BEG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)CO[C@H](C[C@H]([C@H](C(=O)N[C@H]2c3ccccc3C[C@H]2O)OCc4ccccc4)O)C(=O)N[C@H]5c6ccccc6C[C@H]5O
BEG SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)COC(CC(C(C(=O)NC2c3ccccc3CC2O)OCc4ccccc4)O)C(=O)NC5c6ccccc6CC5O
BEG InChI InChI 1.03 InChI=1S/C38H40N2O7/c41-30-19-26-15-7-9-17-28(26)34(30)39-37(44)33(46-22-24-11-3-1-4-12-24)21-32(43)36(47-23-25-13-5-2-6-14-25)38(45)40-35-29-18-10-8-16-27(29)20-31(35)42/h1-18,30-36,41-43H,19-23H2,(H,39,44)(H,40,45)/t30-,31-,32-,33-,34+,35+,36-/m1/s1
BEG InChIKey InChI 1.03 AHAVBKNGKPWROK-UMFPTGFGSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BEG "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,5R)-2,5-bis(benzyloxy)-3-hydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]hexanediamide (non-preferred name)"
BEG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,5R)-3-hydroxy-N,N'-bis[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-2,5-bis(phenylmethoxy)hexanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BEG 'Create component' 1999-10-05 RCSB
BEG 'Modify descriptor' 2011-06-04 RCSB
BEG 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BEG
_pdbx_chem_comp_synonyms.name "INHIBITOR BEA425"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id BEG
_pdbe_chem_comp_drugbank_details.drugbank_id DB04190
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '2,5-dibenzyloxy-3-hydroxy-hexanedioic acid bis-[(2-hydroxy-indan-1-yl)-amide]'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id BEG
_pdbe_chem_comp_synonyms.name 'INHIBITOR BEA425'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id BEG
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04190
_pdbe_chem_comp_drugbank_classification.parent Indanes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Indanes
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as indanes. These are compounds containing an indane moiety, which consists of a cyclopentane fused to a benzene ring.'
#
_pdbe_chem_comp_drugbank_targets.comp_id BEG
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04190
_pdbe_chem_comp_drugbank_targets.name 'Gag-Pol polyprotein'
_pdbe_chem_comp_drugbank_targets.organism HIV-1
_pdbe_chem_comp_drugbank_targets.uniprot_id P03366
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
BEG C01 C 7.880 2.636 1
BEG C02 C 8.345 4.062 2
BEG C03 C 7.344 5.179 3
BEG C04 C 5.876 4.869 4
BEG C05 C 5.410 3.444 5
BEG C06 C 6.412 2.327 6
BEG C07 C 16.290 -0.901 7
BEG C08 C 15.824 -2.327 8
BEG C09 C 16.826 -3.444 9
BEG C10 C 18.294 -3.134 10
BEG C11 C 18.759 -1.708 11
BEG C12 C 17.758 -0.592 12
BEG C13 C 15.288 0.215 13
BEG O14 O 13.820 -0.094 14
BEG C23 C 8.881 1.520 15
BEG O22 O 8.415 0.094 16
BEG C15 C 12.819 1.022 17
BEG C16 C 11.351 0.713 18
BEG C17 C 10.885 -0.713 19
BEG O24 O 11.887 -1.829 20
BEG C18 C 9.417 -1.022 21
BEG C19 C 8.951 -2.448 22
BEG O20 O 9.953 -3.564 23
BEG N21 N 7.483 -2.757 24
BEG C25 C 13.285 2.448 25
BEG O26 O 12.283 3.564 26
BEG N27 N 14.752 2.757 27
BEG C28 C 15.218 4.183 28
BEG C29 C 16.638 4.640 29
BEG C30 C 16.638 6.140 30
BEG C31 C 17.937 3.890 31
BEG C32 C 19.236 4.640 32
BEG C33 C 19.236 6.140 33
BEG C34 C 14.343 5.390 34
BEG O35 O 12.843 5.390 35
BEG C36 C 17.937 6.890 36
BEG C37 C 15.218 6.597 37
BEG C38 C 7.018 -4.183 38
BEG C39 C 5.598 -4.640 39
BEG C40 C 5.598 -6.140 40
BEG C41 C 4.299 -3.890 41
BEG C42 C 3.000 -4.640 42
BEG C43 C 3.000 -6.140 43
BEG C44 C 7.893 -5.390 44
BEG O45 O 9.393 -5.390 45
BEG C46 C 4.299 -6.890 46
BEG C47 C 7.018 -6.597 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
BEG C01 C02 DOUBLE NONE 1
BEG C01 C06 SINGLE NONE 2
BEG C01 C23 SINGLE NONE 3
BEG C02 C03 SINGLE NONE 4
BEG C03 C04 DOUBLE NONE 5
BEG C04 C05 SINGLE NONE 6
BEG C05 C06 DOUBLE NONE 7
BEG C07 C08 DOUBLE NONE 8
BEG C07 C12 SINGLE NONE 9
BEG C07 C13 SINGLE NONE 10
BEG C08 C09 SINGLE NONE 11
BEG C09 C10 DOUBLE NONE 12
BEG C10 C11 SINGLE NONE 13
BEG C11 C12 DOUBLE NONE 14
BEG C13 O14 SINGLE NONE 15
BEG O14 C15 SINGLE NONE 16
BEG C23 O22 SINGLE NONE 17
BEG C18 O22 SINGLE BEGINDASH 18
BEG C15 C16 SINGLE BEGINDASH 19
BEG C15 C25 SINGLE NONE 20
BEG C16 C17 SINGLE NONE 21
BEG C17 O24 SINGLE BEGINWEDGE 22
BEG C17 C18 SINGLE NONE 23
BEG C18 C19 SINGLE NONE 24
BEG C19 O20 DOUBLE NONE 25
BEG C19 N21 SINGLE NONE 26
BEG C38 N21 SINGLE BEGINDASH 27
BEG C25 O26 DOUBLE NONE 28
BEG C25 N27 SINGLE NONE 29
BEG C28 N27 SINGLE BEGINDASH 30
BEG C28 C29 SINGLE NONE 31
BEG C28 C34 SINGLE NONE 32
BEG C29 C30 SINGLE NONE 33
BEG C29 C31 DOUBLE NONE 34
BEG C30 C36 DOUBLE NONE 35
BEG C30 C37 SINGLE NONE 36
BEG C31 C32 SINGLE NONE 37
BEG C32 C33 DOUBLE NONE 38
BEG C33 C36 SINGLE NONE 39
BEG C34 O35 SINGLE BEGINDASH 40
BEG C34 C37 SINGLE NONE 41
BEG C38 C39 SINGLE NONE 42
BEG C38 C44 SINGLE NONE 43
BEG C39 C40 SINGLE NONE 44
BEG C39 C41 DOUBLE NONE 45
BEG C40 C46 DOUBLE NONE 46
BEG C40 C47 SINGLE NONE 47
BEG C41 C42 SINGLE NONE 48
BEG C42 C43 DOUBLE NONE 49
BEG C43 C46 SINGLE NONE 50
BEG C44 O45 SINGLE BEGINDASH 51
BEG C44 C47 SINGLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
BEG MurckoScaffold S1 scaffold 'O=C(N[C@@H]1CCc2ccccc21)[C@@H](CC[C@@H](OCc1ccccc1)C(=O)N[C@@H]1CCc2ccccc21)OCc1ccccc1' InChI=1S/C38H40N2O4/c41-37(39-33-21-19-29-15-7-9-17-31(29)33)35(43-25-27-11-3-1-4-12-27)23-24-36(44-26-28-13-5-2-6-14-28)38(42)40-34-22-20-30-16-8-10-18-32(30)34/h1-18,33-36H,19-26H2,(H,39,41)(H,40,42)/t33-,34-,35-,36-/m1/s1 FXSPZUVCEWAQDQ-MGXDLYCJSA-N
BEG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
BEG phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
BEG Z419084966 F3 fragment NCC(O)Cc1ccccc1 InChI=1S/C9H13NO/c10-7-9(11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 JIIXMZQZEAAIJX-UHFFFAOYSA-N
BEG Z31478538 F4 fragment COCC(=O)NCc1ccccc1 InChI=1S/C10H13NO2/c1-13-8-10(12)11-7-9-5-3-2-4-6-9/h2-6H,7-8H2,1H3,(H,11,12) VLAPGEODGZEQPC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
BEG C01 S1 1
BEG C02 S1 1
BEG C03 S1 1
BEG C04 S1 1
BEG C05 S1 1
BEG C06 S1 1
BEG C07 S1 1
BEG C08 S1 1
BEG C09 S1 1
BEG C10 S1 1
BEG C11 S1 1
BEG C12 S1 1
BEG C13 S1 1
BEG O14 S1 1
BEG C23 S1 1
BEG O22 S1 1
BEG C15 S1 1
BEG C16 S1 1
BEG C17 S1 1
BEG C18 S1 1
BEG C19 S1 1
BEG O20 S1 1
BEG N21 S1 1
BEG C25 S1 1
BEG O26 S1 1
BEG N27 S1 1
BEG C28 S1 1
BEG C29 S1 1
BEG C30 S1 1
BEG C31 S1 1
BEG C32 S1 1
BEG C33 S1 1
BEG C34 S1 1
BEG C36 S1 1
BEG C37 S1 1
BEG C38 S1 1
BEG C39 S1 1
BEG C40 S1 1
BEG C41 S1 1
BEG C42 S1 1
BEG C43 S1 1
BEG C44 S1 1
BEG C46 S1 1
BEG C47 S1 1
BEG N21 F1 1
BEG C19 F1 1
BEG O20 F1 1
BEG C18 F1 1
BEG N27 F1 2
BEG C25 F1 2
BEG O26 F1 2
BEG C15 F1 2
BEG C01 F2 1
BEG C02 F2 1
BEG C03 F2 1
BEG C04 F2 1
BEG C05 F2 1
BEG C06 F2 1
BEG C07 F2 2
BEG C08 F2 2
BEG C09 F2 2
BEG C10 F2 2
BEG C11 F2 2
BEG C12 F2 2
BEG C29 F2 3
BEG C30 F2 3
BEG C36 F2 3
BEG C33 F2 3
BEG C32 F2 3
BEG C31 F2 3
BEG C39 F2 4
BEG C40 F2 4
BEG C46 F2 4
BEG C43 F2 4
BEG C42 F2 4
BEG C41 F2 4
BEG N21 F3 1
BEG C38 F3 1
BEG C44 F3 1
BEG O45 F3 1
BEG C47 F3 1
BEG C40 F3 1
BEG C39 F3 1
BEG C41 F3 1
BEG C42 F3 1
BEG C43 F3 1
BEG C46 F3 1
BEG N27 F3 2
BEG C28 F3 2
BEG C34 F3 2
BEG O35 F3 2
BEG C37 F3 2
BEG C30 F3 2
BEG C29 F3 2
BEG C31 F3 2
BEG C32 F3 2
BEG C33 F3 2
BEG C36 F3 2
BEG C13 F4 1
BEG O14 F4 1
BEG C15 F4 1
BEG C25 F4 1
BEG O26 F4 1
BEG N27 F4 1
BEG C28 F4 1
BEG C29 F4 1
BEG C30 F4 1
BEG C36 F4 1
BEG C33 F4 1
BEG C32 F4 1
BEG C31 F4 1
BEG C23 F4 2
BEG O22 F4 2
BEG C18 F4 2
BEG C19 F4 2
BEG O20 F4 2
BEG N21 F4 2
BEG C38 F4 2
BEG C39 F4 2
BEG C40 F4 2
BEG C46 F4 2
BEG C43 F4 2
BEG C42 F4 2
BEG C41 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id BEG
_pdbe_chem_comp_rdkit_properties.exactmw 636.284
_pdbe_chem_comp_rdkit_properties.amw 636.745
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.316
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 330.308
_pdbe_chem_comp_rdkit_properties.tpsa 137.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.129
_pdbe_chem_comp_rdkit_properties.CrippenMR 173.139
_pdbe_chem_comp_rdkit_properties.chi0v 22.752
_pdbe_chem_comp_rdkit_properties.chi1v 12.482
_pdbe_chem_comp_rdkit_properties.chi2v 5.515
_pdbe_chem_comp_rdkit_properties.chi3v 5.515
_pdbe_chem_comp_rdkit_properties.chi4v 3.534
_pdbe_chem_comp_rdkit_properties.chi0n 62.752
_pdbe_chem_comp_rdkit_properties.chi1n 32.101
_pdbe_chem_comp_rdkit_properties.chi2n 5.515
_pdbe_chem_comp_rdkit_properties.chi3n 5.515
_pdbe_chem_comp_rdkit_properties.chi4n 3.534
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.380
_pdbe_chem_comp_rdkit_properties.kappa1 9.616
_pdbe_chem_comp_rdkit_properties.kappa2 15.019
_pdbe_chem_comp_rdkit_properties.kappa3 7.783
_pdbe_chem_comp_rdkit_properties.Phi 3.073
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
BEG UniChem DrugBank DB04190
BEG UniChem ZINC ZINC000024465909
BEG UniChem SureChEMBL SCHEMBL5967933
BEG UniChem Nikkaji J1.307.324D
BEG UniChem BindingDb 12217
BEG UniChem 'Probes And Drugs' PD059348
BEG UniChem PubChem 444974
BEG UniChem 'PubChem TPHARMA' 15757911
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
BEG C01 4.073 3.637 -1.796 ETKDGv3 1
BEG C02 4.165 4.962 -1.581 ETKDGv3 2
BEG C03 5.480 5.584 -1.318 ETKDGv3 3
BEG C04 6.583 4.827 -1.273 ETKDGv3 4
BEG C05 6.487 3.368 -1.483 ETKDGv3 5
BEG C06 5.298 2.802 -1.728 ETKDGv3 6
BEG C07 -3.168 3.627 3.073 ETKDGv3 7
BEG C08 -4.496 3.815 2.964 ETKDGv3 8
BEG C09 -5.067 5.174 3.081 ETKDGv3 9
BEG C10 -4.263 6.225 3.277 ETKDGv3 10
BEG C11 -2.801 6.030 3.372 ETKDGv3 11
BEG C12 -2.281 4.800 3.272 ETKDGv3 12
BEG C13 -2.573 2.260 2.908 ETKDGv3 13
BEG O14 -2.319 2.038 1.537 ETKDGv3 14
BEG C23 2.743 2.981 -2.017 ETKDGv3 15
BEG O22 2.253 2.522 -0.774 ETKDGv3 16
BEG C15 -1.875 0.709 1.320 ETKDGv3 17
BEG C16 -0.927 0.684 0.111 ETKDGv3 18
BEG C17 0.318 1.573 0.307 ETKDGv3 19
BEG O24 1.048 1.121 1.421 ETKDGv3 20
BEG C18 1.208 1.583 -0.958 ETKDGv3 21
BEG C19 1.781 0.210 -1.221 ETKDGv3 22
BEG O20 1.200 -0.550 -2.042 ETKDGv3 23
BEG N21 2.946 -0.242 -0.508 ETKDGv3 24
BEG C25 -3.048 -0.191 1.028 ETKDGv3 25
BEG O26 -4.141 0.307 0.642 ETKDGv3 26
BEG N27 -2.890 -1.614 1.112 ETKDGv3 27
BEG C28 -3.737 -2.538 0.347 ETKDGv3 28
BEG C29 -2.995 -3.085 -0.817 ETKDGv3 29
BEG C30 -3.092 -4.525 -0.865 ETKDGv3 30
BEG C31 -2.353 -2.399 -1.773 ETKDGv3 31
BEG C32 -1.709 -3.154 -2.876 ETKDGv3 32
BEG C33 -1.800 -4.496 -2.919 ETKDGv3 33
BEG C34 -4.154 -3.805 1.159 ETKDGv3 34
BEG O35 -3.476 -3.905 2.389 ETKDGv3 35
BEG C36 -2.538 -5.228 -1.859 ETKDGv3 36
BEG C37 -3.889 -5.050 0.268 ETKDGv3 37
BEG C38 3.372 -1.645 -0.419 ETKDGv3 38
BEG C39 2.255 -2.517 0.023 ETKDGv3 39
BEG C40 1.930 -3.493 -0.988 ETKDGv3 40
BEG C41 1.596 -2.471 1.188 ETKDGv3 41
BEG C42 0.516 -3.460 1.427 ETKDGv3 42
BEG C43 0.215 -4.374 0.486 ETKDGv3 43
BEG C44 3.816 -2.248 -1.786 ETKDGv3 44
BEG O45 3.941 -1.259 -2.776 ETKDGv3 45
BEG C46 0.960 -4.395 -0.798 ETKDGv3 46
BEG C47 2.775 -3.323 -2.194 ETKDGv3 47
BEG H021 3.281 5.588 -1.595 ETKDGv3 48
BEG H031 5.548 6.652 -1.159 ETKDGv3 49
BEG H041 7.546 5.280 -1.078 ETKDGv3 50
BEG H051 7.379 2.757 -1.435 ETKDGv3 51
BEG H061 5.234 1.730 -1.873 ETKDGv3 52
BEG H081 -5.161 2.979 2.786 ETKDGv3 53
BEG H091 -6.137 5.316 3.005 ETKDGv3 54
BEG H101 -4.679 7.221 3.361 ETKDGv3 55
BEG H111 -2.153 6.884 3.520 ETKDGv3 56
BEG H121 -1.208 4.666 3.336 ETKDGv3 57
BEG H131 -1.625 2.207 3.489 ETKDGv3 58
BEG H132 -3.276 1.497 3.317 ETKDGv3 59
BEG H231 2.024 3.706 -2.461 ETKDGv3 60
BEG H232 2.884 2.149 -2.745 ETKDGv3 61
BEG H151 -1.316 0.294 2.194 ETKDGv3 62
BEG H161 -0.603 -0.366 -0.063 ETKDGv3 63
BEG H162 -1.481 1.027 -0.792 ETKDGv3 64
BEG H171 -0.032 2.617 0.485 ETKDGv3 65
BEG H241 1.607 1.882 1.729 ETKDGv3 66
BEG H181 0.553 1.880 -1.815 ETKDGv3 67
BEG H211 3.471 0.450 0.073 ETKDGv3 68
BEG H271 -1.997 -1.975 1.514 ETKDGv3 69
BEG H281 -4.653 -2.028 -0.024 ETKDGv3 70
BEG H311 -2.309 -1.319 -1.750 ETKDGv3 71
BEG H321 -1.168 -2.621 -3.647 ETKDGv3 72
BEG H331 -1.332 -5.046 -3.725 ETKDGv3 73
BEG H341 -5.242 -3.747 1.379 ETKDGv3 74
BEG H351 -2.526 -4.119 2.196 ETKDGv3 75
BEG H361 -2.623 -6.307 -1.893 ETKDGv3 76
BEG H371 -4.846 -5.465 -0.115 ETKDGv3 77
BEG H372 -3.329 -5.844 0.809 ETKDGv3 78
BEG H381 4.207 -1.728 0.311 ETKDGv3 79
BEG H411 1.846 -1.735 1.940 ETKDGv3 80
BEG H421 -0.024 -3.447 2.364 ETKDGv3 81
BEG H431 -0.569 -5.098 0.664 ETKDGv3 82
BEG H441 4.802 -2.747 -1.636 ETKDGv3 83
BEG H451 4.401 -1.686 -3.546 ETKDGv3 84
BEG H461 0.721 -5.124 -1.561 ETKDGv3 85
BEG H471 2.145 -2.978 -3.042 ETKDGv3 86
BEG H472 3.274 -4.280 -2.459 ETKDGv3 87
#