data_B79
#
_chem_comp.id B79
_chem_comp.name
(8R,9S,10S)-10-[(dimethylamino)methyl]-N-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H38 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-22
_chem_comp.pdbx_modified_date 2022-03-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 522.680
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B79
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DPI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B79 N N1 N 0 1 N N N N N N -8.097 -4.369 -22.849 0.321 -2.218 0.888 N B79 1
B79 C C1 C 0 1 N N N N N N -14.462 -4.689 -22.652 -4.902 -4.579 -1.747 C B79 2
B79 O O1 O 0 1 N N N N N N -13.472 -5.485 -22.015 -4.779 -3.490 -0.831 O B79 3
B79 C1 C2 C 0 1 Y N N N N N -12.161 -5.200 -22.275 -3.524 -3.177 -0.408 C1 B79 4
B79 C10 C3 C 0 1 N N S N N N -1.667 -6.014 -24.114 4.363 -0.005 -0.719 C10 B79 5
B79 C11 C4 C 0 1 N N N N N N -0.630 -5.650 -25.185 4.116 1.364 -1.356 C11 B79 6
B79 C12 C5 C 0 1 N N N N N N -0.810 -3.287 -25.770 4.234 2.567 -3.453 C12 B79 7
B79 C13 C6 C 0 1 N N N N N N -0.652 -4.928 -27.478 6.153 1.319 -2.664 C13 B79 8
B79 C14 C7 C 0 1 N N S N N N -2.751 -7.120 -24.310 3.159 -0.980 -0.818 C14 B79 9
B79 C15 C8 C 0 1 N N R N N N -3.748 -6.103 -23.662 3.752 -1.489 0.479 C15 B79 10
B79 C16 C9 C 0 1 N N N N N N -5.073 -5.699 -24.303 2.802 -1.748 1.688 C16 B79 11
B79 C17 C10 C 0 1 Y N N N N N -3.015 -7.834 -25.617 1.809 -0.325 -0.674 C17 B79 12
B79 C18 C11 C 0 1 Y N N N N N -1.971 -8.389 -26.343 1.728 1.022 -0.369 C18 B79 13
B79 C19 C12 C 0 1 Y N N N N N -2.195 -8.963 -27.580 0.496 1.629 -0.235 C19 B79 14
B79 C2 C13 C 0 1 Y N N N N N -11.638 -3.990 -21.866 -3.321 -2.064 0.394 C2 B79 15
B79 C20 C14 C 0 1 Y N N N N N -3.464 -9.003 -28.121 -0.670 0.879 -0.408 C20 B79 16
B79 C21 C15 C 0 1 Y N N N N N -4.533 -8.500 -27.371 -0.580 -0.481 -0.716 C21 B79 17
B79 C22 C16 C 0 1 Y N N N N N -4.290 -7.918 -26.138 0.659 -1.072 -0.852 C22 B79 18
B79 C23 C17 C 0 1 N N N N N N -3.692 -9.494 -29.453 -1.953 1.502 -0.270 C23 B79 19
B79 C24 C18 C 0 1 N N N N N N -3.805 -9.972 -30.543 -3.004 2.013 -0.157 C24 B79 20
B79 C25 C19 C 0 1 Y N N N N N -3.950 -10.455 -31.883 -4.286 2.635 -0.019 C25 B79 21
B79 C26 C20 C 0 1 Y N N N N N -4.556 -11.678 -32.126 -5.453 1.886 -0.192 C26 B79 22
B79 C27 C21 C 0 1 Y N N N N N -4.775 -12.097 -33.419 -6.684 2.492 -0.058 C27 B79 23
B79 C28 C22 C 0 1 Y N N N N N -4.397 -11.321 -34.477 -6.766 3.839 0.248 C28 B79 24
B79 C29 C23 C 0 1 Y N N N N N -3.845 -10.076 -34.254 -5.615 4.588 0.421 C29 B79 25
B79 C3 C24 C 0 1 Y N N N N N -10.301 -3.710 -22.077 -2.047 -1.746 0.823 C3 B79 26
B79 C30 C25 C 0 1 Y N N N N N -3.638 -9.629 -32.960 -4.377 3.994 0.295 C30 B79 27
B79 C31 C26 C 0 1 Y N N N N N -10.020 -5.847 -23.121 -1.177 -3.658 -0.345 C31 B79 28
B79 C32 C27 C 0 1 Y N N N N N -11.357 -6.127 -22.909 -2.451 -3.975 -0.774 C32 B79 29
B79 C4 C28 C 0 1 Y N N N N N -9.479 -4.639 -22.699 -0.971 -2.541 0.453 C4 B79 30
B79 C5 C29 C 0 1 N N N N N N -7.286 -4.928 -23.785 0.606 -0.961 1.280 C5 B79 31
B79 C6 C30 C 0 1 N N N N N N -5.416 -4.038 -22.458 2.078 0.774 1.955 C6 B79 32
B79 C7 C31 C 0 1 N N N N N N -4.800 -2.724 -22.921 3.059 1.003 3.112 C7 B79 33
B79 C8 C32 C 0 1 N N N N N N -3.292 -2.725 -23.145 4.481 1.339 2.577 C8 B79 34
B79 C9 C33 C 0 1 N N N N N N -2.576 -4.037 -22.864 5.022 0.150 1.746 C9 B79 35
B79 N1 N2 N 0 1 N N N N N N -5.954 -4.877 -23.533 1.862 -0.638 1.650 N1 B79 36
B79 N2 N3 N 0 1 N N N N N N -2.766 -5.020 -23.950 4.097 -0.052 0.690 N2 B79 37
B79 N3 N4 N 0 1 N N N N N N -1.152 -4.656 -26.142 4.686 1.384 -2.710 N3 B79 38
B79 O1 O2 O 0 1 N N N N N N -7.710 -5.472 -24.791 -0.269 -0.117 1.300 O1 B79 39
B79 H1 H1 H 0 1 N N N N N N -7.685 -3.714 -22.215 1.010 -2.901 0.911 H1 B79 40
B79 H2 H2 H 0 1 N N N N N N -15.462 -5.034 -22.349 -5.939 -4.667 -2.070 H2 B79 41
B79 H3 H3 H 0 1 N N N N N N -14.332 -3.637 -22.357 -4.265 -4.399 -2.614 H3 B79 42
B79 H4 H4 H 0 1 N N N N N N -14.359 -4.779 -23.743 -4.594 -5.503 -1.257 H4 B79 43
B79 H5 H5 H 0 1 N N N N N N -1.158 -6.175 -23.152 5.317 -0.447 -1.006 H5 B79 44
B79 H6 H6 H 0 1 N N N N N N -0.352 -6.561 -25.735 3.044 1.551 -1.410 H6 B79 45
B79 H7 H7 H 0 1 N N N N N N 0.260 -5.234 -24.691 4.590 2.137 -0.751 H7 B79 46
B79 H8 H8 H 0 1 N N N N N N -1.187 -3.076 -24.758 4.671 2.557 -4.452 H8 B79 47
B79 H9 H9 H 0 1 N N N N N N 0.283 -3.165 -25.787 3.147 2.554 -3.532 H9 B79 48
B79 H10 H10 H 0 1 N N N N N N -1.268 -2.588 -26.485 4.550 3.469 -2.928 H10 B79 49
B79 H11 H11 H 0 1 N N N N N N -0.908 -5.959 -27.763 6.536 2.159 -2.086 H11 B79 50
B79 H12 H12 H 0 1 N N N N N N -1.110 -4.227 -28.191 6.461 0.384 -2.195 H12 B79 51
B79 H13 H13 H 0 1 N N N N N N 0.441 -4.804 -27.493 6.550 1.365 -3.678 H13 B79 52
B79 H14 H14 H 0 1 N N N N N N -2.553 -7.892 -23.552 3.214 -1.685 -1.648 H14 B79 53
B79 H15 H15 H 0 1 N N N N N N -3.858 -6.289 -22.583 4.578 -2.195 0.382 H15 B79 54
B79 H16 H16 H 0 1 N N N N N N -4.839 -5.154 -25.229 2.279 -2.696 1.565 H16 B79 55
B79 H17 H17 H 0 1 N N N N N N -5.616 -6.624 -24.549 3.364 -1.740 2.623 H17 B79 56
B79 H18 H18 H 0 1 N N N N N N -0.971 -8.372 -25.936 2.630 1.600 -0.235 H18 B79 57
B79 H19 H19 H 0 1 N N N N N N -1.367 -9.385 -28.130 0.434 2.680 0.004 H19 B79 58
B79 H20 H20 H 0 1 N N N N N N -12.273 -3.263 -21.382 -4.158 -1.446 0.682 H20 B79 59
B79 H21 H21 H 0 1 N N N N N N -5.542 -8.565 -27.751 -1.477 -1.066 -0.851 H21 B79 60
B79 H22 H22 H 0 1 N N N N N N -5.118 -7.520 -25.571 0.730 -2.123 -1.090 H22 B79 61
B79 H23 H23 H 0 1 N N N N N N -4.857 -12.304 -31.299 -5.390 0.835 -0.431 H23 B79 62
B79 H24 H24 H 0 1 N N N N N N -5.251 -13.050 -33.598 -7.587 1.915 -0.192 H24 B79 63
B79 H25 H25 H 0 1 N N N N N N -4.530 -11.681 -35.487 -7.733 4.310 0.347 H25 B79 64
B79 H26 H26 H 0 1 N N N N N N -3.574 -9.449 -35.091 -5.686 5.639 0.659 H26 B79 65
B79 H27 H27 H 0 1 N N N N N N -9.894 -2.763 -21.756 -1.889 -0.879 1.447 H27 B79 66
B79 H28 H28 H 0 1 N N N N N N -3.235 -8.642 -32.786 -3.479 4.579 0.431 H28 B79 67
B79 H29 H29 H 0 1 N N N N N N -9.392 -6.572 -23.618 -0.341 -4.280 -0.630 H29 B79 68
B79 H30 H30 H 0 1 N N N N N N -11.772 -7.068 -23.238 -2.611 -4.845 -1.395 H30 B79 69
B79 H31 H31 H 0 1 N N N N N N -6.236 -3.805 -21.763 1.121 1.227 2.213 H31 B79 70
B79 H32 H32 H 0 1 N N N N N N -4.640 -4.613 -21.931 2.469 1.268 1.065 H32 B79 71
B79 H33 H33 H 0 1 N N N N N N -5.025 -1.962 -22.160 2.702 1.831 3.725 H33 B79 72
B79 H34 H34 H 0 1 N N N N N N -3.108 -2.460 -24.197 4.434 2.224 1.944 H34 B79 73
B79 H35 H35 H 0 1 N N N N N N -2.969 -4.462 -21.929 6.010 0.391 1.354 H35 B79 74
B79 H36 H36 H 0 1 N N N N N N -1.500 -3.837 -22.752 5.079 -0.743 2.370 H36 B79 75
B79 H39 H39 H 0 1 N N N N N N -5.279 -2.446 -23.871 3.110 0.102 3.722 H39 B79 76
B79 H40 H40 H 0 1 N N N N N N -2.854 -1.956 -22.491 5.153 1.521 3.415 H40 B79 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B79 C28 C29 DOUB Y N 1
B79 C28 C27 SING Y N 2
B79 C29 C30 SING Y N 3
B79 C27 C26 DOUB Y N 4
B79 C30 C25 DOUB Y N 5
B79 C26 C25 SING Y N 6
B79 C25 C24 SING N N 7
B79 C24 C23 TRIP N N 8
B79 C23 C20 SING N N 9
B79 C20 C19 DOUB Y N 10
B79 C20 C21 SING Y N 11
B79 C19 C18 SING Y N 12
B79 C13 N3 SING N N 13
B79 C21 C22 DOUB Y N 14
B79 C18 C17 DOUB Y N 15
B79 N3 C12 SING N N 16
B79 N3 C11 SING N N 17
B79 C22 C17 SING Y N 18
B79 C17 C14 SING N N 19
B79 C11 C10 SING N N 20
B79 O1 C5 DOUB N N 21
B79 C14 C10 SING N N 22
B79 C14 C15 SING N N 23
B79 C16 C15 SING N N 24
B79 C16 N1 SING N N 25
B79 C10 N2 SING N N 26
B79 N2 C15 SING N N 27
B79 N2 C9 SING N N 28
B79 C5 N1 SING N N 29
B79 C5 N SING N N 30
B79 N1 C6 SING N N 31
B79 C8 C7 SING N N 32
B79 C8 C9 SING N N 33
B79 C31 C32 DOUB Y N 34
B79 C31 C4 SING Y N 35
B79 C7 C6 SING N N 36
B79 C32 C1 SING Y N 37
B79 N C4 SING N N 38
B79 C4 C3 DOUB Y N 39
B79 C O SING N N 40
B79 C1 O SING N N 41
B79 C1 C2 DOUB Y N 42
B79 C3 C2 SING Y N 43
B79 N H1 SING N N 44
B79 C H2 SING N N 45
B79 C H3 SING N N 46
B79 C H4 SING N N 47
B79 C10 H5 SING N N 48
B79 C11 H6 SING N N 49
B79 C11 H7 SING N N 50
B79 C12 H8 SING N N 51
B79 C12 H9 SING N N 52
B79 C12 H10 SING N N 53
B79 C13 H11 SING N N 54
B79 C13 H12 SING N N 55
B79 C13 H13 SING N N 56
B79 C14 H14 SING N N 57
B79 C15 H15 SING N N 58
B79 C16 H16 SING N N 59
B79 C16 H17 SING N N 60
B79 C18 H18 SING N N 61
B79 C19 H19 SING N N 62
B79 C2 H20 SING N N 63
B79 C21 H21 SING N N 64
B79 C22 H22 SING N N 65
B79 C26 H23 SING N N 66
B79 C27 H24 SING N N 67
B79 C28 H25 SING N N 68
B79 C29 H26 SING N N 69
B79 C3 H27 SING N N 70
B79 C30 H28 SING N N 71
B79 C31 H29 SING N N 72
B79 C32 H30 SING N N 73
B79 C6 H31 SING N N 74
B79 C6 H32 SING N N 75
B79 C7 H33 SING N N 76
B79 C8 H34 SING N N 77
B79 C9 H35 SING N N 78
B79 C9 H36 SING N N 79
B79 C7 H39 SING N N 80
B79 C8 H40 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B79 InChI InChI 1.03 InChI=1S/C33H38N4O2/c1-35(2)23-30-32(27-15-13-26(14-16-27)12-11-25-9-5-4-6-10-25)31-24-36(21-7-8-22-37(30)31)33(38)34-28-17-19-29(39-3)20-18-28/h4-6,9-10,13-20,30-32H,7-8,21-24H2,1-3H3,(H,34,38)/t30-,31+,32+/m1/s1
B79 InChIKey InChI 1.03 VKRCTZCBMKVHCK-RTOKGZNSSA-N
B79 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(NC(=O)N2CCCCN3[C@H](CN(C)C)[C@@H]([C@@H]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1"
B79 SMILES CACTVS 3.385 "COc1ccc(NC(=O)N2CCCCN3[CH](CN(C)C)[CH]([CH]3C2)c4ccc(cc4)C#Cc5ccccc5)cc1"
B79 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C[C@@H]1[C@@H]([C@H]2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5"
B79 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CC1C(C2N1CCCCN(C2)C(=O)Nc3ccc(cc3)OC)c4ccc(cc4)C#Cc5ccccc5"
#
_pdbx_chem_comp_identifier.comp_id B79
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(8~{R},9~{S},10~{S})-10-[(dimethylamino)methyl]-~{N}-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B79 'Create component' 2020-12-22 PDBJ
B79 'Initial release' 2022-03-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B79 N N 14.008 3.235 1
B79 C C 10.154 8.926 2
B79 O O 9.765 7.478 3
B79 C1 C 10.826 6.417 4
B79 C10 C 15.493 -4.020 5
B79 C11 C 16.070 -5.405 6
B79 C12 C 18.468 -4.405 7
B79 C13 C 18.135 -6.982 8
B79 C14 C 14.096 -3.441 9
B79 C15 C 14.681 -2.046 10
B79 C16 C 14.106 -0.661 11
B79 C17 C 12.709 -4.013 12
B79 C18 C 12.510 -5.499 13
B79 C19 C 11.123 -6.071 14
B79 C2 C 12.275 6.805 15
B79 C20 C 9.935 -5.155 16
B79 C21 C 10.134 -3.668 17
B79 C22 C 11.521 -3.097 18
B79 C23 C 8.548 -5.726 19
B79 C24 C 7.161 -6.297 20
B79 C25 C 5.774 -6.868 21
B79 C26 C 4.586 -5.953 22
B79 C27 C 3.199 -6.524 23
B79 C28 C 3.000 -8.011 24
B79 C29 C 4.188 -8.926 25
B79 C3 C 13.336 5.744 26
B79 C30 C 5.575 -8.355 27
B79 C31 C 11.498 3.907 28
B79 C32 C 10.438 4.968 29
B79 C4 C 12.947 4.295 30
B79 C5 C 13.620 1.786 31
B79 C6 C 16.066 1.299 32
B79 C7 C 17.452 0.725 33
B79 C8 C 18.026 -0.661 34
B79 C9 C 17.452 -2.046 35
B79 N1 N 14.681 0.725 36
B79 N2 N 16.066 -2.620 37
B79 N3 N 17.558 -5.597 38
B79 O1 O 12.171 1.398 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B79 C28 C29 DOUBLE NONE 1
B79 C28 C27 SINGLE NONE 2
B79 C29 C30 SINGLE NONE 3
B79 C27 C26 DOUBLE NONE 4
B79 C30 C25 DOUBLE NONE 5
B79 C26 C25 SINGLE NONE 6
B79 C25 C24 SINGLE NONE 7
B79 C24 C23 TRIPLE NONE 8
B79 C23 C20 SINGLE NONE 9
B79 C20 C19 SINGLE NONE 10
B79 C20 C21 DOUBLE NONE 11
B79 C19 C18 DOUBLE NONE 12
B79 C13 N3 SINGLE NONE 13
B79 C21 C22 SINGLE NONE 14
B79 C18 C17 SINGLE NONE 15
B79 N3 C12 SINGLE NONE 16
B79 N3 C11 SINGLE NONE 17
B79 C22 C17 DOUBLE NONE 18
B79 C14 C17 SINGLE BEGINDASH 19
B79 C10 C11 SINGLE BEGINDASH 20
B79 O1 C5 DOUBLE NONE 21
B79 C14 C10 SINGLE NONE 22
B79 C14 C15 SINGLE NONE 23
B79 C16 C15 SINGLE NONE 24
B79 C16 N1 SINGLE NONE 25
B79 C10 N2 SINGLE NONE 26
B79 N2 C15 SINGLE NONE 27
B79 N2 C9 SINGLE NONE 28
B79 C5 N1 SINGLE NONE 29
B79 C5 N SINGLE NONE 30
B79 N1 C6 SINGLE NONE 31
B79 C8 C7 SINGLE NONE 32
B79 C8 C9 SINGLE NONE 33
B79 C31 C32 SINGLE NONE 34
B79 C31 C4 DOUBLE NONE 35
B79 C7 C6 SINGLE NONE 36
B79 C32 C1 DOUBLE NONE 37
B79 N C4 SINGLE NONE 38
B79 C4 C3 SINGLE NONE 39
B79 C O SINGLE NONE 40
B79 C1 O SINGLE NONE 41
B79 C1 C2 SINGLE NONE 42
B79 C3 C2 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B79 MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)N1CCCCN2C[C@H](c3ccc(C#Cc4ccccc4)cc3)[C@@H]2C1' InChI=1S/C29H29N3O/c33-29(30-26-11-5-2-6-12-26)32-20-8-7-19-31-21-27(28(31)22-32)25-17-15-24(16-18-25)14-13-23-9-3-1-4-10-23/h1-6,9-12,15-18,27-28H,7-8,19-22H2,(H,30,33)/t27-,28+/m1/s1 IIRBMLPEHQJWNF-IZLXSDGUSA-N
B79 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B79 N S1 1
B79 C1 S1 1
B79 C10 S1 1
B79 C14 S1 1
B79 C15 S1 1
B79 C16 S1 1
B79 C17 S1 1
B79 C18 S1 1
B79 C19 S1 1
B79 C2 S1 1
B79 C20 S1 1
B79 C21 S1 1
B79 C22 S1 1
B79 C23 S1 1
B79 C24 S1 1
B79 C25 S1 1
B79 C26 S1 1
B79 C27 S1 1
B79 C28 S1 1
B79 C29 S1 1
B79 C3 S1 1
B79 C30 S1 1
B79 C31 S1 1
B79 C32 S1 1
B79 C4 S1 1
B79 C5 S1 1
B79 C6 S1 1
B79 C7 S1 1
B79 C8 S1 1
B79 C9 S1 1
B79 N1 S1 1
B79 N2 S1 1
B79 O1 S1 1
B79 C1 F1 1
B79 C32 F1 1
B79 C31 F1 1
B79 C4 F1 1
B79 C3 F1 1
B79 C2 F1 1
B79 C17 F1 2
B79 C18 F1 2
B79 C19 F1 2
B79 C20 F1 2
B79 C21 F1 2
B79 C22 F1 2
B79 C25 F1 3
B79 C30 F1 3
B79 C29 F1 3
B79 C28 F1 3
B79 C27 F1 3
B79 C26 F1 3
#
_pdbe_chem_comp_rdkit_properties.comp_id B79
_pdbe_chem_comp_rdkit_properties.exactmw 522.299
_pdbe_chem_comp_rdkit_properties.amw 522.693
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 77
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 285.559
_pdbe_chem_comp_rdkit_properties.tpsa 48.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.114
_pdbe_chem_comp_rdkit_properties.CrippenMR 155.029
_pdbe_chem_comp_rdkit_properties.chi0v 19.105
_pdbe_chem_comp_rdkit_properties.chi1v 10.322
_pdbe_chem_comp_rdkit_properties.chi2v 4.531
_pdbe_chem_comp_rdkit_properties.chi3v 4.531
_pdbe_chem_comp_rdkit_properties.chi4v 2.943
_pdbe_chem_comp_rdkit_properties.chi0n 57.105
_pdbe_chem_comp_rdkit_properties.chi1n 29.269
_pdbe_chem_comp_rdkit_properties.chi2n 4.531
_pdbe_chem_comp_rdkit_properties.chi3n 4.531
_pdbe_chem_comp_rdkit_properties.chi4n 2.943
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.790
_pdbe_chem_comp_rdkit_properties.kappa1 6.912
_pdbe_chem_comp_rdkit_properties.kappa2 12.378
_pdbe_chem_comp_rdkit_properties.kappa3 6.445
_pdbe_chem_comp_rdkit_properties.Phi 2.194
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B79 UniChem SureChEMBL SCHEMBL16703902
B79 UniChem PubChem 118065266
B79 UniChem BRENDA 263953
B79 UniChem 'Probes And Drugs' PD160473
B79 UniChem Nikkaji J3.586.432F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B79 N -3.267 0.767 1.375 ETKDGv3 1
B79 C -6.846 6.222 0.223 ETKDGv3 2
B79 O -6.746 4.919 -0.344 ETKDGv3 3
B79 C1 -5.872 3.917 0.107 ETKDGv3 4
B79 C10 0.392 -2.084 -2.314 ETKDGv3 5
B79 C11 1.502 -3.113 -1.956 ETKDGv3 6
B79 C12 0.546 -4.911 -3.355 ETKDGv3 7
B79 C13 2.436 -3.623 -4.178 ETKDGv3 8
B79 C14 0.482 -0.670 -1.697 ETKDGv3 9
B79 C15 -0.885 -0.996 -1.085 ETKDGv3 10
B79 C16 -1.075 -1.015 0.439 ETKDGv3 11
B79 C17 1.612 -0.242 -0.756 ETKDGv3 12
B79 C18 2.167 1.126 -0.941 ETKDGv3 13
B79 C19 3.135 1.591 -0.143 ETKDGv3 14
B79 C2 -5.887 2.614 -0.591 ETKDGv3 15
B79 C20 3.669 0.746 0.943 ETKDGv3 16
B79 C21 3.177 -0.485 1.129 ETKDGv3 17
B79 C22 2.105 -0.998 0.251 ETKDGv3 18
B79 C23 4.712 1.251 1.796 ETKDGv3 19
B79 C24 5.586 1.675 2.511 ETKDGv3 20
B79 C25 6.629 2.181 3.363 ETKDGv3 21
B79 C26 7.154 3.549 3.149 ETKDGv3 22
B79 C27 8.125 4.025 3.940 ETKDGv3 23
B79 C28 8.672 3.187 5.027 ETKDGv3 24
B79 C29 8.198 1.950 5.222 ETKDGv3 25
B79 C3 -5.079 1.621 -0.199 ETKDGv3 26
B79 C30 7.127 1.421 4.351 ETKDGv3 27
B79 C31 -4.130 3.006 1.571 ETKDGv3 28
B79 C32 -5.026 4.099 1.140 ETKDGv3 29
B79 C4 -4.158 1.814 0.952 ETKDGv3 30
B79 C5 -3.508 -0.619 1.096 ETKDGv3 31
B79 C6 -2.672 -2.965 0.647 ETKDGv3 32
B79 C7 -3.557 -3.346 -0.563 ETKDGv3 33
B79 C8 -3.389 -2.478 -1.827 ETKDGv3 34
B79 C9 -2.023 -2.607 -2.534 ETKDGv3 35
B79 N1 -2.424 -1.514 0.759 ETKDGv3 36
B79 N2 -0.884 -2.370 -1.620 ETKDGv3 37
B79 N3 1.746 -4.147 -2.988 ETKDGv3 38
B79 O1 -4.686 -1.063 1.173 ETKDGv3 39
B79 H1 -2.467 1.012 2.001 ETKDGv3 40
B79 H2 -7.615 6.800 -0.331 ETKDGv3 41
B79 H3 -5.874 6.752 0.138 ETKDGv3 42
B79 H4 -7.153 6.152 1.288 ETKDGv3 43
B79 H5 0.269 -1.992 -3.416 ETKDGv3 44
B79 H6 2.461 -2.583 -1.784 ETKDGv3 45
B79 H7 1.243 -3.627 -1.006 ETKDGv3 46
B79 H8 -0.042 -5.177 -2.451 ETKDGv3 47
B79 H9 -0.090 -4.344 -4.067 ETKDGv3 48
B79 H10 0.851 -5.861 -3.844 ETKDGv3 49
B79 H11 3.359 -3.079 -3.883 ETKDGv3 50
B79 H12 2.747 -4.465 -4.832 ETKDGv3 51
B79 H13 1.786 -2.943 -4.767 ETKDGv3 52
B79 H14 0.356 0.081 -2.509 ETKDGv3 53
B79 H15 -1.650 -0.329 -1.548 ETKDGv3 54
B79 H16 -0.343 -1.678 0.933 ETKDGv3 55
B79 H17 -0.900 0.004 0.833 ETKDGv3 56
B79 H18 1.786 1.765 -1.729 ETKDGv3 57
B79 H19 3.525 2.590 -0.296 ETKDGv3 58
B79 H20 -6.551 2.465 -1.433 ETKDGv3 59
B79 H21 3.557 -1.118 1.922 ETKDGv3 60
B79 H22 1.745 -1.993 0.448 ETKDGv3 61
B79 H23 6.756 4.167 2.353 ETKDGv3 62
B79 H24 8.511 5.025 3.785 ETKDGv3 63
B79 H25 9.457 3.575 5.664 ETKDGv3 64
B79 H26 8.598 1.334 6.018 ETKDGv3 65
B79 H27 -5.092 0.686 -0.743 ETKDGv3 66
B79 H28 6.754 0.418 4.522 ETKDGv3 67
B79 H29 -3.456 3.177 2.402 ETKDGv3 68
B79 H30 -4.982 5.038 1.674 ETKDGv3 69
B79 H31 -1.712 -3.520 0.568 ETKDGv3 70
B79 H32 -3.151 -3.328 1.581 ETKDGv3 71
B79 H33 -3.371 -4.410 -0.825 ETKDGv3 72
B79 H34 -3.619 -1.418 -1.597 ETKDGv3 73
B79 H35 -2.008 -1.900 -3.395 ETKDGv3 74
B79 H36 -1.952 -3.635 -2.938 ETKDGv3 75
B79 H39 -4.621 -3.281 -0.251 ETKDGv3 76
B79 H40 -4.167 -2.794 -2.555 ETKDGv3 77
#