data_B3B
#
_chem_comp.id B3B
_chem_comp.name 2-{(E)-[2-(4-phenyl-1,3-thiazol-2-yl)hydrazinylidene]methyl}benzaldehyde
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H13 N3 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-01
_chem_comp.pdbx_modified_date 2014-07-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 307.370
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code B3B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LS0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B3B O8 O8 O 0 1 N N N N N N -34.584 -16.074 5.364 -3.305 -2.537 0.234 O8 B3B 1
B3B C7 C7 C 0 1 N N N N N N -34.643 -17.087 4.672 -3.115 -1.345 0.111 C7 B3B 2
B3B C5 C5 C 0 1 Y N N N N N -34.939 -17.116 3.203 -4.254 -0.425 0.038 C5 B3B 3
B3B C6 C6 C 0 1 Y N N N N N -34.783 -16.023 2.352 -4.041 0.972 0.004 C6 B3B 4
B3B C1 C1 C 0 1 Y N N N N N -35.066 -16.138 0.987 -5.138 1.833 -0.066 C1 B3B 5
B3B C2 C2 C 0 1 Y N N N N N -35.518 -17.346 0.462 -6.417 1.319 -0.101 C2 B3B 6
B3B C3 C3 C 0 1 Y N N N N N -35.684 -18.441 1.304 -6.627 -0.052 -0.068 C3 B3B 7
B3B C4 C4 C 0 1 Y N N N N N -35.385 -18.323 2.659 -5.561 -0.922 -0.005 C4 B3B 8
B3B C9 C9 C 0 1 N N N N N N -34.297 -14.723 2.858 -2.676 1.514 0.044 C9 B3B 9
B3B N10 N10 N 0 1 N N N N N N -33.632 -13.989 2.095 -1.655 0.709 0.001 N10 B3B 10
B3B N11 N11 N 0 1 N N N N N N -33.166 -12.845 2.543 -0.353 1.225 0.039 N11 B3B 11
B3B C12 C12 C 0 1 Y N N N N N -32.652 -11.993 1.641 0.734 0.368 -0.006 C12 B3B 12
B3B N13 N13 N 0 1 Y N N N N N -32.504 -10.679 1.874 1.979 0.733 0.022 N13 B3B 13
B3B C14 C14 C 0 1 Y N N N N N -31.967 -10.025 0.797 2.889 -0.229 -0.030 C14 B3B 14
B3B C15 C15 C 0 1 Y N N N N N -31.698 -10.817 -0.338 2.401 -1.480 -0.107 C15 B3B 15
B3B S16 S16 S 0 1 Y N N N N N -32.148 -12.450 0.061 0.641 -1.388 -0.103 S16 B3B 16
B3B C17 C17 C 0 1 Y N N N N N -31.767 -8.562 0.851 4.344 0.055 -0.006 C17 B3B 17
B3B C18 C18 C 0 1 Y N N N N N -31.994 -7.814 -0.297 5.262 -0.992 -0.070 C18 B3B 18
B3B C19 C19 C 0 1 Y N N N N N -31.834 -6.436 -0.248 6.615 -0.722 -0.048 C19 B3B 19
B3B C20 C20 C 0 1 Y N N N N N -31.467 -5.814 0.941 7.061 0.585 0.038 C20 B3B 20
B3B C21 C21 C 0 1 Y N N N N N -31.262 -6.571 2.091 6.155 1.628 0.101 C21 B3B 21
B3B C22 C22 C 0 1 Y N N N N N -31.426 -7.950 2.049 4.799 1.370 0.074 C22 B3B 22
B3B H1 H1 H 0 1 N N N N N N -34.467 -18.033 5.162 -2.107 -0.962 0.059 H1 B3B 23
B3B H2 H2 H 0 1 N N N N N N -34.933 -15.286 0.337 -4.985 2.902 -0.091 H2 B3B 24
B3B H3 H3 H 0 1 N N N N N N -35.738 -17.432 -0.592 -7.262 1.989 -0.155 H3 B3B 25
B3B H4 H4 H 0 1 N N N N N N -36.044 -19.379 0.908 -7.635 -0.440 -0.097 H4 B3B 26
B3B H5 H5 H 0 1 N N N N N N -35.500 -19.183 3.303 -5.734 -1.988 0.020 H5 B3B 27
B3B H6 H6 H 0 1 N N N N N N -34.512 -14.412 3.870 -2.520 2.581 0.108 H6 B3B 28
B3B H7 H7 H 0 1 N N N N N N -33.193 -12.618 3.516 -0.213 2.183 0.096 H7 B3B 29
B3B H8 H8 H 0 1 N N N N N N -31.290 -10.475 -1.278 2.987 -2.386 -0.157 H8 B3B 30
B3B H9 H9 H 0 1 N N N N N N -32.291 -8.298 -1.216 4.915 -2.013 -0.136 H9 B3B 31
B3B H10 H10 H 0 1 N N N N N N -31.995 -5.844 -1.137 7.327 -1.533 -0.097 H10 B3B 32
B3B H11 H11 H 0 1 N N N N N N -31.341 -4.742 0.972 8.121 0.791 0.055 H11 B3B 33
B3B H12 H12 H 0 1 N N N N N N -30.976 -6.088 3.014 6.509 2.646 0.168 H12 B3B 34
B3B H13 H13 H 0 1 N N N N N N -31.289 -8.541 2.942 4.093 2.185 0.119 H13 B3B 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B3B C15 S16 SING Y N 1
B3B C15 C14 DOUB Y N 2
B3B C18 C19 DOUB Y N 3
B3B C18 C17 SING Y N 4
B3B C19 C20 SING Y N 5
B3B S16 C12 SING Y N 6
B3B C2 C1 SING Y N 7
B3B C2 C3 DOUB Y N 8
B3B C14 C17 SING N N 9
B3B C14 N13 SING Y N 10
B3B C17 C22 DOUB Y N 11
B3B C20 C21 DOUB Y N 12
B3B C1 C6 DOUB Y N 13
B3B C3 C4 SING Y N 14
B3B C12 N13 DOUB Y N 15
B3B C12 N11 SING N N 16
B3B C22 C21 SING Y N 17
B3B N10 N11 SING N N 18
B3B N10 C9 DOUB N E 19
B3B C6 C9 SING N N 20
B3B C6 C5 SING Y N 21
B3B C4 C5 DOUB Y N 22
B3B C5 C7 SING N N 23
B3B C7 O8 DOUB N N 24
B3B C7 H1 SING N N 25
B3B C1 H2 SING N N 26
B3B C2 H3 SING N N 27
B3B C3 H4 SING N N 28
B3B C4 H5 SING N N 29
B3B C9 H6 SING N N 30
B3B N11 H7 SING N N 31
B3B C15 H8 SING N N 32
B3B C18 H9 SING N N 33
B3B C19 H10 SING N N 34
B3B C20 H11 SING N N 35
B3B C21 H12 SING N N 36
B3B C22 H13 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B3B SMILES ACDLabs 12.01 O=Cc3c(/C=N/Nc1nc(cs1)c2ccccc2)cccc3
B3B InChI InChI 1.03 InChI=1S/C17H13N3OS/c21-11-15-9-5-4-8-14(15)10-18-20-17-19-16(12-22-17)13-6-2-1-3-7-13/h1-12H,(H,19,20)/b18-10+
B3B InChIKey InChI 1.03 IGARVLMWRSOJOY-VCHYOVAHSA-N
B3B SMILES_CANONICAL CACTVS 3.385 O=Cc1ccccc1/C=N/Nc2scc(n2)c3ccccc3
B3B SMILES CACTVS 3.385 O=Cc1ccccc1C=NNc2scc(n2)c3ccccc3
B3B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)c2csc(n2)N/N=C/c3ccccc3C=O
B3B SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)c2csc(n2)NN=Cc3ccccc3C=O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B3B "SYSTEMATIC NAME" ACDLabs 12.01 2-{(E)-[2-(4-phenyl-1,3-thiazol-2-yl)hydrazinylidene]methyl}benzaldehyde
B3B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-[(E)-[(4-phenyl-1,3-thiazol-2-yl)hydrazinylidene]methyl]benzaldehyde
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B3B 'Create component' 2013-08-01 PDBJ
B3B 'Initial release' 2014-07-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
B3B O8 O 3.000 -4.457 1
B3B C7 C 4.299 -3.707 2
B3B C5 C 5.598 -4.457 3
B3B C6 C 6.897 -3.707 4
B3B C1 C 8.196 -4.457 5
B3B C2 C 8.196 -5.957 6
B3B C3 C 6.897 -6.707 7
B3B C4 C 5.598 -5.957 8
B3B C9 C 6.897 -2.207 9
B3B N10 N 8.196 -1.457 10
B3B N11 N 8.196 0.043 11
B3B C12 C 9.495 0.793 12
B3B N13 N 9.652 2.284 13
B3B C14 C 11.119 2.596 14
B3B C15 C 11.869 1.297 15
B3B S16 S 10.866 0.182 16
B3B C17 C 11.729 3.967 17
B3B C18 C 13.221 4.123 18
B3B C19 C 13.831 5.494 19
B3B C20 C 12.950 6.707 20
B3B C21 C 11.458 6.551 21
B3B C22 C 10.848 5.180 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
B3B C15 S16 SINGLE NONE 1
B3B C15 C14 DOUBLE NONE 2
B3B C18 C19 DOUBLE NONE 3
B3B C18 C17 SINGLE NONE 4
B3B C19 C20 SINGLE NONE 5
B3B S16 C12 SINGLE NONE 6
B3B C2 C1 DOUBLE NONE 7
B3B C2 C3 SINGLE NONE 8
B3B C14 C17 SINGLE NONE 9
B3B C14 N13 SINGLE NONE 10
B3B C17 C22 DOUBLE NONE 11
B3B C20 C21 DOUBLE NONE 12
B3B C1 C6 SINGLE NONE 13
B3B C3 C4 DOUBLE NONE 14
B3B C12 N13 DOUBLE NONE 15
B3B C12 N11 SINGLE NONE 16
B3B C22 C21 SINGLE NONE 17
B3B N10 N11 SINGLE ENDDOWNRIGHT 18
B3B N10 C9 DOUBLE NONE 19
B3B C6 C9 SINGLE ENDDOWNRIGHT 20
B3B C6 C5 DOUBLE NONE 21
B3B C4 C5 SINGLE NONE 22
B3B C5 C7 SINGLE NONE 23
B3B C7 O8 DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
B3B MurckoScaffold S1 scaffold C(=N/Nc1nc(-c2ccccc2)cs1)\c1ccccc1 InChI=1S/C16H13N3S/c1-3-7-13(8-4-1)11-17-19-16-18-15(12-20-16)14-9-5-2-6-10-14/h1-12H,(H,18,19)/b17-11+ DWKMMHAIALSICX-GZTJUZNOSA-N
B3B phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
B3B thiazole F2 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
B3B C5 S1 1
B3B C6 S1 1
B3B C1 S1 1
B3B C2 S1 1
B3B C3 S1 1
B3B C4 S1 1
B3B C9 S1 1
B3B N10 S1 1
B3B N11 S1 1
B3B C12 S1 1
B3B N13 S1 1
B3B C14 S1 1
B3B C15 S1 1
B3B S16 S1 1
B3B C17 S1 1
B3B C18 S1 1
B3B C19 S1 1
B3B C20 S1 1
B3B C21 S1 1
B3B C22 S1 1
B3B C5 F1 1
B3B C6 F1 1
B3B C1 F1 1
B3B C2 F1 1
B3B C3 F1 1
B3B C4 F1 1
B3B C17 F1 2
B3B C18 F1 2
B3B C19 F1 2
B3B C20 F1 2
B3B C21 F1 2
B3B C22 F1 2
B3B C15 F2 1
B3B C14 F2 1
B3B N13 F2 1
B3B C12 F2 1
B3B S16 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id B3B
_pdbe_chem_comp_rdkit_properties.exactmw 307.078
_pdbe_chem_comp_rdkit_properties.amw 307.378
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.035
_pdbe_chem_comp_rdkit_properties.tpsa 54.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.199
_pdbe_chem_comp_rdkit_properties.CrippenMR 87.918
_pdbe_chem_comp_rdkit_properties.chi0v 11.475
_pdbe_chem_comp_rdkit_properties.chi1v 6.523
_pdbe_chem_comp_rdkit_properties.chi2v 2.921
_pdbe_chem_comp_rdkit_properties.chi3v 2.921
_pdbe_chem_comp_rdkit_properties.chi4v 1.898
_pdbe_chem_comp_rdkit_properties.chi0n 23.658
_pdbe_chem_comp_rdkit_properties.chi1n 12.154
_pdbe_chem_comp_rdkit_properties.chi2n 2.270
_pdbe_chem_comp_rdkit_properties.chi3n 2.270
_pdbe_chem_comp_rdkit_properties.chi4n 1.344
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.790
_pdbe_chem_comp_rdkit_properties.kappa1 5.443
_pdbe_chem_comp_rdkit_properties.kappa2 6.777
_pdbe_chem_comp_rdkit_properties.kappa3 3.266
_pdbe_chem_comp_rdkit_properties.Phi 1.677
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
B3B UniChem ZINC ZINC000004087469
B3B UniChem PubChem 9630277
B3B UniChem eMolecules 26758370
B3B UniChem SureChEMBL SCHEMBL16742080
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
B3B O8 -3.015 -0.001 2.279 ETKDGv3 1
B3B C7 -4.180 -0.204 1.844 ETKDGv3 2
B3B C5 -4.608 0.280 0.512 ETKDGv3 3
B3B C6 -3.761 0.483 -0.536 ETKDGv3 4
B3B C1 -4.280 1.117 -1.774 ETKDGv3 5
B3B C2 -5.574 1.434 -1.889 ETKDGv3 6
B3B C3 -6.501 1.159 -0.779 ETKDGv3 7
B3B C4 -6.047 0.614 0.354 ETKDGv3 8
B3B C9 -2.343 0.070 -0.546 ETKDGv3 9
B3B N10 -1.970 -1.057 -0.020 ETKDGv3 10
B3B N11 -0.641 -1.514 -0.043 ETKDGv3 11
B3B C12 0.490 -0.659 0.174 ETKDGv3 12
B3B N13 1.704 -1.064 -0.020 ETKDGv3 13
B3B C14 2.695 -0.077 0.325 ETKDGv3 14
B3B C15 2.201 1.070 0.810 ETKDGv3 15
B3B S16 0.424 0.985 0.857 ETKDGv3 16
B3B C17 4.147 -0.353 0.166 ETKDGv3 17
B3B C18 5.152 0.749 0.169 ETKDGv3 18
B3B C19 6.456 0.479 0.025 ETKDGv3 19
B3B C20 6.910 -0.914 -0.143 ETKDGv3 20
B3B C21 6.019 -1.910 -0.160 ETKDGv3 21
B3B C22 4.578 -1.619 -0.002 ETKDGv3 22
B3B H1 -4.902 -0.682 2.493 ETKDGv3 23
B3B H2 -3.612 1.313 -2.604 ETKDGv3 24
B3B H3 -5.944 1.887 -2.799 ETKDGv3 25
B3B H4 -7.550 1.407 -0.880 ETKDGv3 26
B3B H5 -6.739 0.430 1.167 ETKDGv3 27
B3B H6 -1.638 0.653 -1.126 ETKDGv3 28
B3B H7 -0.476 -2.544 -0.083 ETKDGv3 29
B3B H8 2.778 1.916 1.154 ETKDGv3 30
B3B H9 4.846 1.781 0.267 ETKDGv3 31
B3B H10 7.180 1.283 0.023 ETKDGv3 32
B3B H11 7.965 -1.127 -0.258 ETKDGv3 33
B3B H12 6.350 -2.933 -0.286 ETKDGv3 34
B3B H13 3.884 -2.450 -0.013 ETKDGv3 35
#