data_ASP
#
_chem_comp.id ASP
_chem_comp.name 'ASPARTIC ACID'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C4 H7 N O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 133.103
_chem_comp.one_letter_code D
_chem_comp.three_letter_code ASP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ASP N N N 0 1 N N N Y Y N 33.487 17.736 39.094 -0.317 1.688 0.066 N ASP 1
ASP CA CA C 0 1 N N S Y N N 34.909 17.506 38.709 -0.470 0.286 -0.344 CA ASP 2
ASP C C C 0 1 N N N Y N Y 34.993 16.527 37.537 -1.868 -0.180 -0.029 C ASP 3
ASP O O O 0 1 N N N Y N Y 36.106 16.031 37.261 -2.534 0.415 0.786 O ASP 4
ASP CB CB C 0 1 N N N N N N 35.682 16.954 39.915 0.539 -0.580 0.413 CB ASP 5
ASP CG CG C 0 1 N N N N N N 35.231 15.544 40.306 1.938 -0.195 0.004 CG ASP 6
ASP OD1 OD1 O 0 1 N N N N N N 35.793 14.986 41.279 2.109 0.681 -0.810 OD1 ASP 7
ASP OD2 OD2 O 0 1 N N N N N N 34.327 14.999 39.631 2.992 -0.826 0.543 OD2 ASP 8
ASP OXT OXT O 0 1 N Y N Y N Y 33.935 16.265 36.913 -2.374 -1.256 -0.652 OXT ASP 9
ASP H H H 0 1 N N N Y Y N 33.448 18.377 39.860 -0.928 2.289 -0.467 H ASP 10
ASP H2 HN2 H 0 1 N Y N Y Y N 32.988 18.117 38.315 -0.478 1.795 1.056 H2 ASP 11
ASP HA HA H 0 1 N N N Y N N 35.356 18.461 38.395 -0.292 0.199 -1.416 HA ASP 12
ASP HB2 HB1 H 0 1 N N N N N N 36.751 16.919 39.657 0.419 -0.425 1.485 HB2 ASP 13
ASP HB3 HB2 H 0 1 N N N N N N 35.515 17.623 40.772 0.367 -1.630 0.176 HB3 ASP 14
ASP HD2 HD2 H 0 1 N N N N N N 34.155 14.130 39.974 3.869 -0.545 0.250 HD2 ASP 15
ASP HXT HXT H 0 1 N Y N Y N Y 34.122 15.645 36.218 -3.275 -1.517 -0.416 HXT ASP 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASP N CA SING N N 1
ASP N H SING N N 2
ASP N H2 SING N N 3
ASP CA C SING N N 4
ASP CA CB SING N N 5
ASP CA HA SING N N 6
ASP C O DOUB N N 7
ASP C OXT SING N N 8
ASP CB CG SING N N 9
ASP CB HB2 SING N N 10
ASP CB HB3 SING N N 11
ASP CG OD1 DOUB N N 12
ASP CG OD2 SING N N 13
ASP OD2 HD2 SING N N 14
ASP OXT HXT SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ASP SMILES ACDLabs 12.01 'O=C(O)CC(N)C(=O)O'
ASP SMILES_CANONICAL CACTVS 3.370 'N[C@@H](CC(O)=O)C(O)=O'
ASP SMILES CACTVS 3.370 'N[CH](CC(O)=O)C(O)=O'
ASP SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.0 'C([C@@H](C(=O)O)N)C(=O)O'
ASP SMILES 'OpenEye OEToolkits' 1.7.0 'C(C(C(=O)O)N)C(=O)O'
ASP InChI InChI 1.03 'InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/t2-/m0/s1'
ASP InChIKey InChI 1.03 CKLJMWTZIZZHCS-REOHCLBHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ASP 'SYSTEMATIC NAME' ACDLabs 12.01 'L-aspartic acid'
ASP 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.0 '(2S)-2-azanylbutanedioic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ASP 'Create component' 1999-07-08 EBI
ASP 'Modify leaving atom flag' 2011-01-28 RCSB
ASP 'Modify descriptor' 2011-06-04 RCSB
ASP 'Modify backbone' 2023-11-03 PDBE
ASP 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ASP
_pdbx_chem_comp_pcm.modified_residue_id THR
_pdbx_chem_comp_pcm.type Aspartylation
_pdbx_chem_comp_pcm.category 'Amino acid'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom CG
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id ASP
_pdbe_chem_comp_drugbank_details.drugbank_id DB00128
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Aspartic acid'
_pdbe_chem_comp_drugbank_details.description
'One of the non-essential amino acids commonly occurring in the L-form. It is found in animals and plants, especially in sugar cane and sugar beets. It may be a neurotransmitter.'
_pdbe_chem_comp_drugbank_details.cas_number 56-84-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'There are also claims that L-aspartate has ergogenic effects, that it enhances performance in both prolonged exercise and short intensive exercise. It is hypothesized that L-aspartate, especially the potassium magnesium aspartate salt, spares stores of muscle glycogen and/or promotes a faster rate of glycogen resynthesis during exercise. It has also been hypothesized that L-aspartate can enhance short intensive exercise by serving as a substrate for energy production in the Krebs cycle and for stimulating the purine nucleotide cycle.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ASP '(S)-2-aminobutanedioic acid' DrugBank ?
ASP '(S)-2-aminosuccinic acid' DrugBank ?
ASP '2-Aminosuccinic acid' DrugBank ?
ASP 'Acidum asparticum' DrugBank ?
ASP Asp DrugBank ?
ASP 'Aspartic acid' DrugBank ?
ASP D DrugBank ?
ASP L-Asp DrugBank ?
ASP L-Aspartate DrugBank ?
ASP 'L-Aspartic acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ASP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00128
_pdbe_chem_comp_drugbank_classification.parent 'Aspartic acid and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as aspartic acid and derivatives. These are compounds containing an aspartic acid or a derivative thereof resulting from reaction of aspartic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
ASP DB00128 'Glutamate receptor ionotropic, NMDA 1' Humans Q05586 unknown 1
ASP DB00128 'Glutamate receptor ionotropic, NMDA 2B' Humans Q13224 unknown 2
ASP DB00128 'Glutamate receptor ionotropic, NMDA 2A' Humans Q12879 unknown 3
ASP DB00128 'Adenylosuccinate synthetase isozyme 1' Humans Q8N142 unknown 4
ASP DB00128 'Adenylosuccinate synthetase isozyme 2' Humans P30520 unknown 5
ASP DB00128 'Electrogenic aspartate/glutamate antiporter SLC25A13, mitochondrial' Humans Q9UJS0 unknown 6
ASP DB00128 'Aspartate aminotransferase, cytoplasmic' Humans P17174 unknown 7
ASP DB00128 Aspartoacylase Humans P45381 unknown 8
ASP DB00128 'Asparagine synthetase [glutamine-hydrolyzing]' Humans P08243 unknown 9
ASP DB00128 'Argininosuccinate synthase' Humans P00966 unknown 10
ASP DB00128 Aminoacylase-1 Humans Q03154 unknown 11
ASP DB00128 'Aspartate aminotransferase, mitochondrial' Humans P00505 unknown 12
ASP DB00128 'Aspartate--tRNA ligase, cytoplasmic' Humans P14868 unknown 13
ASP DB00128 'Electrogenic aspartate/glutamate antiporter SLC25A12, mitochondrial' Humans O75746 unknown 14
ASP DB00128 'Aspartyl/asparaginyl beta-hydroxylase' Humans Q12797 unknown 15
ASP DB00128 'Bifunctional phosphoribosylaminoimidazole carboxylase/phosphoribosylaminoimidazole succinocarboxamide synthetase' Humans P22234 unknown 16
ASP DB00128 'Adenylosuccinate synthetase isozyme 2' Humans P30520 unknown 17
ASP DB00128 'Excitatory amino acid transporter 3' Humans P43005 unknown 18
ASP DB00128 'Aspartate--tRNA ligase, mitochondrial' Humans Q6PI48 unknown 19
ASP DB00128 'Isoaspartyl peptidase/L-asparaginase' Humans Q7L266 unknown 20
ASP DB00128 'Ribonuclease pancreatic' Humans P07998 unknown 21
ASP DB00128 'Lysozyme C' Humans P61626 unknown 22
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ASP N N 7.702 -1.643 1
ASP CA C 7.702 -0.142 2
ASP C C 9.002 0.608 3
ASP O O 10.301 -0.142 4
ASP CB C 6.404 0.608 5
ASP CG C 5.104 -0.142 6
ASP OD1 O 3.805 0.608 7
ASP OD2 O 5.104 -1.643 8
ASP OXT O 9.002 2.107 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ASP CA N SINGLE BEGINWEDGE 1
ASP CA C SINGLE NONE 2
ASP CA CB SINGLE NONE 3
ASP C O DOUBLE NONE 4
ASP C OXT SINGLE NONE 5
ASP CB CG SINGLE NONE 6
ASP CG OD1 DOUBLE NONE 7
ASP CG OD2 SINGLE NONE 8
#
_pdbe_chem_comp_substructure.comp_id ASP
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ASP O F1 1
ASP C F1 1
ASP CA F1 1
ASP N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ASP
_pdbe_chem_comp_rdkit_properties.exactmw 133.038
_pdbe_chem_comp_rdkit_properties.amw 133.103
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 61.210
_pdbe_chem_comp_rdkit_properties.tpsa 100.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.127
_pdbe_chem_comp_rdkit_properties.CrippenMR 27.864
_pdbe_chem_comp_rdkit_properties.chi0v 4.080
_pdbe_chem_comp_rdkit_properties.chi1v 1.790
_pdbe_chem_comp_rdkit_properties.chi2v 0.414
_pdbe_chem_comp_rdkit_properties.chi3v 0.414
_pdbe_chem_comp_rdkit_properties.chi4v 0.148
_pdbe_chem_comp_rdkit_properties.chi0n 11.080
_pdbe_chem_comp_rdkit_properties.chi1n 5.001
_pdbe_chem_comp_rdkit_properties.chi2n 0.414
_pdbe_chem_comp_rdkit_properties.chi3n 0.414
_pdbe_chem_comp_rdkit_properties.chi4n 0.148
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 1.947
_pdbe_chem_comp_rdkit_properties.kappa2 3.032
_pdbe_chem_comp_rdkit_properties.kappa3 3.480
_pdbe_chem_comp_rdkit_properties.Phi 0.656
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ASP UniChem DrugBank DB00128
ASP UniChem 'Guide to Pharmacology' 3309
ASP UniChem 'Guide to Pharmacology' 4534
ASP UniChem 'KEGG LIGAND' C00049
ASP UniChem ChEBI 17053
ASP UniChem ZINC ZINC000000895032
ASP UniChem eMolecules 478712
ASP UniChem fdasrs 30KYC7MIAI
ASP UniChem SureChEMBL SCHEMBL3231
ASP UniChem PharmGKB PA448494
ASP UniChem HMDB HMDB0000191
ASP UniChem 'PubChem TPHARMA' 15119963
ASP UniChem PubChem 139060126
ASP UniChem PubChem 44367445
ASP UniChem PubChem 5960
ASP UniChem Mcule MCULE-3710241722
ASP UniChem Mcule MCULE-6700641640
ASP UniChem NMRShiftDB 60018699
ASP UniChem ACTor 155436-59-2
ASP UniChem ACTor 181119-33-5
ASP UniChem ACTor 27881-03-4
ASP UniChem ACTor 39162-75-9
ASP UniChem Nikkaji J9.169C
ASP UniChem BindingDb 18125
ASP UniChem 'EPA CompTox Dashboard' DTXSID7022621
ASP UniChem DrugCentral 1550
ASP UniChem MetaboLights MTBLC17053
ASP UniChem BRENDA 1353
ASP UniChem BRENDA 145027
ASP UniChem BRENDA 145044
ASP UniChem BRENDA 145940
ASP UniChem BRENDA 145958
ASP UniChem BRENDA 170998
ASP UniChem BRENDA 170999
ASP UniChem BRENDA 229567
ASP UniChem BRENDA 294
ASP UniChem BRENDA 2947
ASP UniChem BRENDA 304
ASP UniChem BRENDA 34449
ASP UniChem BRENDA 49150
ASP UniChem BRENDA 55021
ASP UniChem BRENDA 724
ASP UniChem BRENDA 96164
ASP UniChem BRENDA 97
ASP UniChem ChemicalBook CB3141599
ASP UniChem ChemicalBook CB8141600
ASP UniChem DailyMed 'ASPARTIC ACID'
ASP UniChem ClinicalTrials 'ASPARTIC ACID'
ASP UniChem ClinicalTrials 'L-ASPARTIC ACID'
ASP UniChem rxnorm ASPARTATE
ASP UniChem rxnorm 'ASPARTIC ACID'
ASP UniChem MedChemExpress HY-N0666
ASP UniChem 'Probes And Drugs' PD002813
ASP UniChem CCDC LASPRT
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ASP N -0.187 1.850 0.486 ETKDGv3 1
ASP CA 0.461 0.548 0.673 ETKDGv3 2
ASP C 1.321 0.173 -0.509 ETKDGv3 3
ASP O 0.950 0.433 -1.685 ETKDGv3 4
ASP CB -0.574 -0.545 0.998 ETKDGv3 5
ASP CG -1.554 -0.779 -0.114 ETKDGv3 6
ASP OD1 -2.635 -0.131 -0.151 ETKDGv3 7
ASP OD2 -1.259 -1.695 -1.118 ETKDGv3 8
ASP OXT 2.515 -0.511 -0.298 ETKDGv3 9
ASP H 0.556 2.579 0.382 ETKDGv3 10
ASP H2 -0.745 1.851 -0.399 ETKDGv3 11
ASP HA 1.131 0.629 1.558 ETKDGv3 12
ASP HB2 -0.046 -1.498 1.218 ETKDGv3 13
ASP HB3 -1.128 -0.259 1.919 ETKDGv3 14
ASP HD2 -1.905 -1.856 -1.881 ETKDGv3 15
ASP HXT 3.100 -0.788 -1.078 ETKDGv3 16
#