data_AOR
#
_chem_comp.id AOR
_chem_comp.name N~2~-ACETYL-L-ORNITHINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H14 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-06-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 174.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AOR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZQ6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AOR CA CA C 0 1 N N S N N N 109.938 42.724 82.739 0.289 -0.473 0.245 CA AOR 1
AOR C C C 0 1 N N N N N N 109.793 43.532 81.446 1.253 -1.582 -0.088 C AOR 2
AOR O O O 0 1 N N N N N N 108.671 44.012 81.154 2.193 -1.367 -0.817 O AOR 3
AOR OXT OXT O 0 1 N N N N N N 110.809 43.671 80.733 1.068 -2.809 0.424 OXT AOR 4
AOR CB CB C 0 1 N N N N N N 109.060 43.308 83.852 -1.115 -0.861 -0.223 CB AOR 5
AOR CG CG C 0 1 N N N N N N 109.337 44.770 84.186 -2.115 0.208 0.225 CG AOR 6
AOR CD CD C 0 1 N N N N N N 108.321 45.301 85.198 -3.519 -0.180 -0.243 CD AOR 7
AOR NE NE N 0 1 N N N N N N 108.505 44.691 86.552 -4.479 0.846 0.187 NE AOR 8
AOR N1 N1 N 0 1 N N N N N N 111.350 42.584 83.120 0.707 0.757 -0.432 N1 AOR 9
AOR C1 C1 C 0 1 N N N N N N 112.063 41.507 82.793 1.627 1.560 0.137 C1 AOR 10
AOR O1 O1 O 0 1 N N N N N N 111.636 40.653 82.014 2.109 1.265 1.210 O1 AOR 11
AOR C2 C2 C 0 1 N N N N N N 113.431 41.431 83.464 2.057 2.826 -0.559 C2 AOR 12
AOR HA HA H 0 1 N N N N N N 109.569 41.703 82.562 0.281 -0.310 1.322 HA AOR 13
AOR HXT HXT H 0 1 N N N N N N 110.589 44.183 79.964 1.687 -3.521 0.210 HXT AOR 14
AOR HB1 1HB H 0 1 N N N N N N 109.285 42.732 84.762 -1.128 -0.937 -1.310 HB1 AOR 15
AOR HB2 2HB H 0 1 N N N N N N 108.012 43.232 83.527 -1.391 -1.821 0.212 HB2 AOR 16
AOR HG1 1HG H 0 1 N N N N N N 109.257 45.363 83.263 -2.102 0.284 1.312 HG1 AOR 17
AOR HG2 2HG H 0 1 N N N N N N 110.347 44.854 84.615 -1.839 1.168 -0.210 HG2 AOR 18
AOR HD1 1HD H 0 1 N N N N N N 107.315 45.038 84.840 -3.532 -0.256 -1.330 HD1 AOR 19
AOR HD2 2HD H 0 1 N N N N N N 108.447 46.390 85.284 -3.795 -1.141 0.192 HD2 AOR 20
AOR HNE1 1HNE H 0 0 N N N N N N 109.356 45.026 86.956 -4.248 1.688 -0.317 HNE1 AOR 21
AOR HNE2 2HNE H 0 0 N N N N N N 108.546 43.695 86.467 -5.386 0.550 -0.141 HNE2 AOR 22
AOR HN1 HN1 H 0 1 N N N N N N 111.788 43.318 83.639 0.322 0.993 -1.291 HN1 AOR 23
AOR H21 1H2 H 0 1 N N N N N N 113.491 40.516 84.071 2.909 2.614 -1.205 H21 AOR 24
AOR H22 2H2 H 0 1 N N N N N N 113.571 42.310 84.110 1.232 3.208 -1.160 H22 AOR 25
AOR H23 3H2 H 0 1 N N N N N N 114.217 41.413 82.695 2.341 3.571 0.184 H23 AOR 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AOR CA C SING N N 1
AOR CA CB SING N N 2
AOR CA N1 SING N N 3
AOR CA HA SING N N 4
AOR C O DOUB N N 5
AOR C OXT SING N N 6
AOR OXT HXT SING N N 7
AOR CB CG SING N N 8
AOR CB HB1 SING N N 9
AOR CB HB2 SING N N 10
AOR CG CD SING N N 11
AOR CG HG1 SING N N 12
AOR CG HG2 SING N N 13
AOR CD NE SING N N 14
AOR CD HD1 SING N N 15
AOR CD HD2 SING N N 16
AOR NE HNE1 SING N N 17
AOR NE HNE2 SING N N 18
AOR N1 C1 SING N N 19
AOR N1 HN1 SING N N 20
AOR C1 O1 DOUB N N 21
AOR C1 C2 SING N N 22
AOR C2 H21 SING N N 23
AOR C2 H22 SING N N 24
AOR C2 H23 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AOR SMILES ACDLabs 10.04 O=C(NC(C(=O)O)CCCN)C
AOR SMILES_CANONICAL CACTVS 3.341 CC(=O)N[C@@H](CCCN)C(O)=O
AOR SMILES CACTVS 3.341 CC(=O)N[CH](CCCN)C(O)=O
AOR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N[C@@H](CCCN)C(=O)O
AOR SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)NC(CCCN)C(=O)O
AOR InChI InChI 1.03 InChI=1S/C7H14N2O3/c1-5(10)9-6(7(11)12)3-2-4-8/h6H,2-4,8H2,1H3,(H,9,10)(H,11,12)/t6-/m0/s1
AOR InChIKey InChI 1.03 JRLGPAXAGHMNOL-LURJTMIESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AOR "SYSTEMATIC NAME" ACDLabs 10.04 N~2~-acetyl-L-ornithine
AOR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-acetamido-5-amino-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AOR 'Create component' 2005-06-08 RCSB
AOR 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AOR CA C 6.897 1.590 1
AOR C C 8.196 2.340 2
AOR O O 9.495 1.590 3
AOR OXT O 8.196 3.840 4
AOR CB C 6.897 0.090 5
AOR CG C 8.196 -0.660 6
AOR CD C 8.196 -2.160 7
AOR NE N 9.495 -2.910 8
AOR N1 N 5.598 2.340 9
AOR C1 C 4.299 1.590 10
AOR O1 O 4.299 0.090 11
AOR C2 C 3.000 2.340 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AOR CA C SINGLE NONE 1
AOR CA CB SINGLE BEGINDASH 2
AOR CA N1 SINGLE NONE 3
AOR C O DOUBLE NONE 4
AOR C OXT SINGLE NONE 5
AOR CB CG SINGLE NONE 6
AOR CG CD SINGLE NONE 7
AOR CD NE SINGLE NONE 8
AOR N1 C1 SINGLE NONE 9
AOR C1 O1 DOUBLE NONE 10
AOR C1 C2 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
AOR amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
AOR peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
AOR N1 F1 1
AOR C1 F1 1
AOR O1 F1 1
AOR C2 F1 1
AOR O F2 1
AOR C F2 1
AOR CA F2 1
AOR N1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id AOR
_pdbe_chem_comp_rdkit_properties.exactmw 174.100
_pdbe_chem_comp_rdkit_properties.amw 174.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.714
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 90.866
_pdbe_chem_comp_rdkit_properties.tpsa 92.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.685
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.529
_pdbe_chem_comp_rdkit_properties.chi0v 5.619
_pdbe_chem_comp_rdkit_properties.chi1v 2.533
_pdbe_chem_comp_rdkit_properties.chi2v 0.644
_pdbe_chem_comp_rdkit_properties.chi3v 0.644
_pdbe_chem_comp_rdkit_properties.chi4v 0.313
_pdbe_chem_comp_rdkit_properties.chi0n 19.619
_pdbe_chem_comp_rdkit_properties.chi1n 9.283
_pdbe_chem_comp_rdkit_properties.chi2n 0.644
_pdbe_chem_comp_rdkit_properties.chi3n 0.644
_pdbe_chem_comp_rdkit_properties.chi4n 0.313
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 1.870
_pdbe_chem_comp_rdkit_properties.kappa2 5.538
_pdbe_chem_comp_rdkit_properties.kappa3 4.675
_pdbe_chem_comp_rdkit_properties.Phi 0.863
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AOR UniChem 'KEGG LIGAND' C00437
AOR UniChem ChEBI 16543
AOR UniChem ChEBI 57805
AOR UniChem ZINC ZINC000001532657
AOR UniChem SureChEMBL SCHEMBL159460
AOR UniChem HMDB HMDB0003357
AOR UniChem NMRShiftDB 60018781
AOR UniChem ACTor 2185-16-2
AOR UniChem ACTor 6205-08-9
AOR UniChem Recon acorn
AOR UniChem Nikkaji J37.495D
AOR UniChem 'EPA CompTox Dashboard' DTXSID80331400
AOR UniChem MetaboLights MTBLC16543
AOR UniChem MetaboLights MTBLC57805
AOR UniChem BRENDA 11066
AOR UniChem BRENDA 113986
AOR UniChem BRENDA 12626
AOR UniChem BRENDA 13368
AOR UniChem BRENDA 164153
AOR UniChem BRENDA 173850
AOR UniChem BRENDA 20100
AOR UniChem BRENDA 2570
AOR UniChem BRENDA 4293
AOR UniChem BRENDA 51817
AOR UniChem Rhea 57805
AOR UniChem ChemicalBook CB6699031
AOR UniChem MedChemExpress HY-113080
AOR UniChem 'Probes And Drugs' PD102023
AOR UniChem eMolecules 30069639
AOR UniChem 'PubChem TPHARMA' 16947200
AOR UniChem PubChem 439232
AOR UniChem PubChem 6992102
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AOR CA 0.453 -1.289 -0.330 ETKDGv3 1
AOR C -0.049 -1.722 -1.684 ETKDGv3 2
AOR O -0.459 -2.902 -1.851 ETKDGv3 3
AOR OXT -0.109 -0.817 -2.741 ETKDGv3 4
AOR CB -0.675 -0.661 0.514 ETKDGv3 5
AOR CG -1.193 0.676 -0.049 ETKDGv3 6
AOR CD -2.246 1.309 0.867 ETKDGv3 7
AOR NE -3.444 0.476 0.938 ETKDGv3 8
AOR N1 1.593 -0.374 -0.454 ETKDGv3 9
AOR C1 2.516 -0.148 0.621 ETKDGv3 10
AOR O1 2.420 -0.804 1.694 ETKDGv3 11
AOR C2 3.614 0.852 0.463 ETKDGv3 12
AOR HA 0.798 -2.208 0.196 ETKDGv3 13
AOR HXT -0.464 -1.100 -3.647 ETKDGv3 14
AOR HB1 -0.296 -0.496 1.546 ETKDGv3 15
AOR HB2 -1.516 -1.385 0.586 ETKDGv3 16
AOR HG1 -1.636 0.522 -1.056 ETKDGv3 17
AOR HG2 -0.348 1.390 -0.150 ETKDGv3 18
AOR HD1 -2.514 2.316 0.475 ETKDGv3 19
AOR HD2 -1.823 1.441 1.887 ETKDGv3 20
AOR HNE1 -4.099 0.920 1.621 ETKDGv3 21
AOR HNE2 -3.920 0.507 0.007 ETKDGv3 22
AOR HN1 1.726 0.176 -1.333 ETKDGv3 23
AOR H21 4.149 1.001 1.424 ETKDGv3 24
AOR H22 3.188 1.824 0.136 ETKDGv3 25
AOR H23 4.334 0.493 -0.301 ETKDGv3 26
#