data_ALC
#
_chem_comp.id ALC
_chem_comp.name '2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID'
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H17 N O2'
_chem_comp.mon_nstd_parent_comp_id ALA
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-06-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces HAC
_chem_comp.formula_weight 171.237
_chem_comp.one_letter_code A
_chem_comp.three_letter_code ALC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1B3H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ALC N N N 0 1 N N N Y Y N 5.202 19.841 15.462 0.018 1.763 1.424 N ALC 1
ALC CA CA C 0 1 N N S Y N N 4.068 20.470 16.099 -0.305 0.331 1.460 CA ALC 2
ALC C C C 0 1 N N N Y N Y 2.773 20.426 15.279 -0.081 -0.199 2.853 C ALC 3
ALC O O O 0 1 N N N Y N Y 2.695 20.749 14.080 0.762 0.297 3.560 O ALC 4
ALC CB CB C 0 1 N N N N N N 4.350 21.947 16.448 0.595 -0.419 0.477 CB ALC 5
ALC CG CG C 0 1 N N N N N N 5.173 22.082 17.793 0.368 0.118 -0.936 CG ALC 6
ALC CD2 CD2 C 0 1 N N N N N N 4.984 23.530 18.320 1.269 -0.632 -1.918 CD2 ALC 7
ALC CE2 CE2 C 0 1 N N N N N N 5.877 23.819 19.539 1.042 -0.093 -3.332 CE2 ALC 8
ALC CZ CZ C 0 1 N N N N N N 7.361 23.533 19.253 -0.422 -0.295 -3.726 CZ ALC 9
ALC CE1 CE1 C 0 1 N N N N N N 7.579 22.144 18.620 -1.322 0.455 -2.743 CE1 ALC 10
ALC CD1 CD1 C 0 1 N N N N N N 6.674 21.928 17.416 -1.095 -0.083 -1.329 CD1 ALC 11
ALC OXT OXT O 0 1 N Y N Y N Y 1.684 20.010 15.944 -0.819 -1.224 3.307 OXT ALC 12
ALC H H H 0 1 N N N Y Y N 6.063 19.870 16.007 0.988 1.848 1.689 H ALC 13
ALC H2 HN2 H 0 1 N Y N Y Y N 5.354 20.239 14.535 -0.044 2.050 0.459 H2 ALC 14
ALC HA HA H 0 1 N N N Y N N 3.916 19.863 17.022 -1.348 0.186 1.180 HA ALC 15
ALC HB2 1HB H 0 1 N N N N N N 4.856 22.474 15.606 1.639 -0.275 0.758 HB2 ALC 16
ALC HB3 2HB H 0 1 N N N N N N 3.408 22.543 16.485 0.356 -1.482 0.504 HB3 ALC 17
ALC HG HG H 0 1 N N N N N N 4.848 21.330 18.549 0.608 1.181 -0.962 HG ALC 18
ALC HD23 1HD2 H 0 0 N N N N N N 5.147 24.280 17.511 2.312 -0.487 -1.638 HD23 ALC 19
ALC HD22 2HD2 H 0 0 N N N N N N 3.912 23.743 18.543 1.029 -1.695 -1.892 HD22 ALC 20
ALC HE23 1HE2 H 0 0 N N N N N N 5.730 24.861 19.908 1.282 0.969 -3.359 HE23 ALC 21
ALC HE22 2HE2 H 0 0 N N N N N N 5.524 23.261 20.438 1.684 -0.628 -4.032 HE22 ALC 22
ALC HZ3 1HZ H 0 1 N N N N N N 7.811 24.336 18.625 -0.583 0.088 -4.733 HZ3 ALC 23
ALC HZ2 2HZ H 0 1 N N N N N N 7.979 23.657 20.172 -0.661 -1.358 -3.699 HZ2 ALC 24
ALC HE13 1HE1 H 0 0 N N N N N N 8.650 21.979 18.358 -1.083 1.518 -2.770 HE13 ALC 25
ALC HE12 2HE1 H 0 0 N N N N N N 7.456 21.330 19.372 -2.366 0.311 -3.024 HE12 ALC 26
ALC HD12 1HD1 H 0 0 N N N N N N 6.872 20.945 16.928 -1.335 -1.146 -1.303 HD12 ALC 27
ALC HD13 2HD1 H 0 0 N N N N N N 6.952 22.600 16.571 -1.737 0.451 -0.629 HD13 ALC 28
ALC HXT HXT H 0 1 N Y N Y N Y 0.881 19.982 15.436 -0.676 -1.564 4.201 HXT ALC 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALC N CA SING N N 1
ALC N H SING N N 2
ALC N H2 SING N N 3
ALC CA C SING N N 4
ALC CA CB SING N N 5
ALC CA HA SING N N 6
ALC C O DOUB N N 7
ALC C OXT SING N N 8
ALC CB CG SING N N 9
ALC CB HB2 SING N N 10
ALC CB HB3 SING N N 11
ALC CG CD2 SING N N 12
ALC CG CD1 SING N N 13
ALC CG HG SING N N 14
ALC CD2 CE2 SING N N 15
ALC CD2 HD23 SING N N 16
ALC CD2 HD22 SING N N 17
ALC CE2 CZ SING N N 18
ALC CE2 HE23 SING N N 19
ALC CE2 HE22 SING N N 20
ALC CZ CE1 SING N N 21
ALC CZ HZ3 SING N N 22
ALC CZ HZ2 SING N N 23
ALC CE1 CD1 SING N N 24
ALC CE1 HE13 SING N N 25
ALC CE1 HE12 SING N N 26
ALC CD1 HD12 SING N N 27
ALC CD1 HD13 SING N N 28
ALC OXT HXT SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ALC SMILES ACDLabs 10.04 'O=C(O)C(N)CC1CCCCC1'
ALC SMILES_CANONICAL CACTVS 3.341 'N[C@@H](CC1CCCCC1)C(O)=O'
ALC SMILES CACTVS 3.341 'N[CH](CC1CCCCC1)C(O)=O'
ALC SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'C1CCC(CC1)C[C@@H](C(=O)O)N'
ALC SMILES 'OpenEye OEToolkits' 1.5.0 'C1CCC(CC1)CC(C(=O)O)N'
ALC InChI InChI 1.03 'InChI=1S/C9H17NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h7-8H,1-6,10H2,(H,11,12)/t8-/m0/s1'
ALC InChIKey InChI 1.03 ORQXBVXKBGUSBA-QMMMGPOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ALC 'SYSTEMATIC NAME' ACDLabs 10.04 3-cyclohexyl-L-alanine
ALC 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2S)-2-amino-3-cyclohexyl-propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ALC 'Create component' 2000-06-30 EBI
ALC 'Modify descriptor' 2011-06-04 RCSB
ALC 'Modify backbone' 2023-11-03 PDBE
ALC 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ALC
_pdbx_chem_comp_pcm.modified_residue_id ALA
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id ALC
_pdbe_chem_comp_drugbank_details.drugbank_id DB02884
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3-Cyclohexyl-L-alanine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 27527-05-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ALC 3-Cyclohexyl-L-alanine DrugBank ?
ALC beta-Cyclohexyl-alanine DrugBank ?
ALC beta-Cyclohexyl-L-alanine DrugBank ?
ALC 'β-Cyclohexyl-alanine' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ALC
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02884
_pdbe_chem_comp_drugbank_classification.parent 'L-alpha-amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
ALC DB02884 'Voltage-dependent calcium channel subunit alpha-2/delta-1' Humans P54289 unknown 1
ALC DB02884 'Zinc finger Y-chromosomal protein' Humans P08048 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ALC N N 5.598 2.910 1
ALC CA C 5.598 1.410 2
ALC C C 6.897 0.660 3
ALC O O 8.196 1.410 4
ALC CB C 4.299 0.660 5
ALC CG C 4.299 -0.840 6
ALC CD2 C 3.000 -1.590 7
ALC CE2 C 3.000 -3.090 8
ALC CZ C 4.299 -3.840 9
ALC CE1 C 5.598 -3.090 10
ALC CD1 C 5.598 -1.590 11
ALC OXT O 6.897 -0.840 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ALC CA N SINGLE BEGINDASH 1
ALC CA C SINGLE NONE 2
ALC CA CB SINGLE NONE 3
ALC C O DOUBLE NONE 4
ALC C OXT SINGLE NONE 5
ALC CB CG SINGLE NONE 6
ALC CG CD2 SINGLE NONE 7
ALC CG CD1 SINGLE NONE 8
ALC CD2 CE2 SINGLE NONE 9
ALC CE2 CZ SINGLE NONE 10
ALC CZ CE1 SINGLE NONE 11
ALC CE1 CD1 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ALC MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
ALC cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
ALC peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ALC CG S1 1
ALC CD2 S1 1
ALC CE2 S1 1
ALC CZ S1 1
ALC CE1 S1 1
ALC CD1 S1 1
ALC CG F1 1
ALC CD2 F1 1
ALC CE2 F1 1
ALC CZ F1 1
ALC CE1 F1 1
ALC CD1 F1 1
ALC O F2 1
ALC C F2 1
ALC CA F2 1
ALC N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ALC
_pdbe_chem_comp_rdkit_properties.exactmw 171.126
_pdbe_chem_comp_rdkit_properties.amw 171.240
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 97.036
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.369
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.803
_pdbe_chem_comp_rdkit_properties.chi0v 5.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.882
_pdbe_chem_comp_rdkit_properties.chi2v 0.937
_pdbe_chem_comp_rdkit_properties.chi3v 0.937
_pdbe_chem_comp_rdkit_properties.chi4v 0.482
_pdbe_chem_comp_rdkit_properties.chi0n 22.764
_pdbe_chem_comp_rdkit_properties.chi1n 11.185
_pdbe_chem_comp_rdkit_properties.chi2n 0.937
_pdbe_chem_comp_rdkit_properties.chi3n 0.937
_pdbe_chem_comp_rdkit_properties.chi4n 0.482
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.538
_pdbe_chem_comp_rdkit_properties.kappa2 4.454
_pdbe_chem_comp_rdkit_properties.kappa3 2.815
_pdbe_chem_comp_rdkit_properties.Phi 0.571
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ALC UniChem DrugBank DB02884
ALC UniChem ZINC ZINC000012368795
ALC UniChem eMolecules 722539
ALC UniChem fdasrs GYR4SF0FVQ
ALC UniChem 'PubChem TPHARMA' 16118210
ALC UniChem PubChem 712421
ALC UniChem BindingDb 50179725
ALC UniChem 'EPA CompTox Dashboard' DTXSID60351883
ALC UniChem BRENDA 203547
ALC UniChem BRENDA 50068
ALC UniChem 'Probes And Drugs' PD007554
ALC UniChem Nikkaji J88.501K
ALC UniChem SureChEMBL SCHEMBL123134
ALC UniChem PubChem 42555571
ALC UniChem Mcule MCULE-8551085565
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ALC N 2.182 -1.884 -0.130 ETKDGv3 1
ALC CA 2.034 -0.610 -0.839 ETKDGv3 2
ALC C 3.396 -0.079 -1.182 ETKDGv3 3
ALC O 3.643 0.318 -2.352 ETKDGv3 4
ALC CB 1.260 0.441 -0.007 ETKDGv3 5
ALC CG -0.164 0.013 0.425 ETKDGv3 6
ALC CD2 -1.094 -0.216 -0.789 ETKDGv3 7
ALC CE2 -2.519 -0.571 -0.344 ETKDGv3 8
ALC CZ -3.095 0.504 0.583 ETKDGv3 9
ALC CE1 -2.186 0.719 1.796 ETKDGv3 10
ALC CD1 -0.765 1.089 1.356 ETKDGv3 11
ALC OXT 4.379 0.007 -0.199 ETKDGv3 12
ALC H 1.273 -2.400 -0.159 ETKDGv3 13
ALC H2 2.421 -1.708 0.874 ETKDGv3 14
ALC HA 1.497 -0.793 -1.795 ETKDGv3 15
ALC HB2 1.853 0.675 0.906 ETKDGv3 16
ALC HB3 1.189 1.382 -0.598 ETKDGv3 17
ALC HG -0.095 -0.932 1.007 ETKDGv3 18
ALC HD23 -1.122 0.697 -1.424 ETKDGv3 19
ALC HD22 -0.717 -1.056 -1.408 ETKDGv3 20
ALC HE23 -3.169 -0.669 -1.240 ETKDGv3 21
ALC HE22 -2.511 -1.552 0.181 ETKDGv3 22
ALC HZ3 -3.208 1.459 0.024 ETKDGv3 23
ALC HZ2 -4.102 0.188 0.930 ETKDGv3 24
ALC HE13 -2.159 -0.205 2.414 ETKDGv3 25
ALC HE12 -2.600 1.538 2.423 ETKDGv3 26
ALC HD12 -0.787 2.073 0.837 ETKDGv3 27
ALC HD13 -0.130 1.195 2.263 ETKDGv3 28
ALC HXT 5.297 0.375 -0.414 ETKDGv3 29
#