data_ABH
#
_chem_comp.id ABH
_chem_comp.name "2(S)-AMINO-6-BORONOHEXANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H15 B N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-10-07
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 191.998
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ABH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1D3V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ABH N N N 0 1 N N N N N N 65.472 9.849 30.913 2.766 1.809 0.144 N ABH 1
ABH CA CA C 0 1 N N S N N N 65.562 10.076 29.441 2.673 0.384 0.486 CA ABH 2
ABH C C C 0 1 N N N N N N 66.991 9.670 29.055 3.871 -0.345 -0.067 C ABH 3
ABH O O O 0 1 N N N N N N 67.426 9.537 27.950 4.515 0.146 -0.964 O ABH 4
ABH OT OT O 0 1 N N N N N N 67.730 9.463 30.146 4.221 -1.539 0.436 OT ABH 5
ABH CB CB C 0 1 N N N N N N 65.300 11.571 29.111 1.396 -0.203 -0.118 CB ABH 6
ABH CG CG C 0 1 N N N N N N 66.310 12.545 29.695 0.176 0.450 0.535 CG ABH 7
ABH CD CD C 0 1 N N N N N N 65.953 14.009 29.451 -1.102 -0.136 -0.069 CD ABH 8
ABH CE CE C 0 1 N N N N N N 67.134 14.957 29.683 -2.321 0.517 0.584 CE ABH 9
ABH B B B -1 1 N N N N N N 66.814 16.500 29.836 -3.655 -0.095 -0.046 B ABH 10
ABH O2 O2 O 0 1 N N N N N N 68.050 17.265 30.010 -3.686 -1.444 0.177 O2 ABH 11
ABH O1 O1 O 0 1 N N N N N N 66.031 16.732 31.027 -4.744 0.489 0.538 O1 ABH 12
ABH O3 O3 O 0 1 N N N N N N 66.083 17.078 28.733 -3.675 0.145 -1.391 O3 ABH 13
ABH HN1 1HN H 0 1 N N N N N N 64.522 10.118 31.169 3.667 2.127 0.470 HN1 ABH 14
ABH HN2 2HN H 0 1 N N N N N N 66.194 10.330 31.448 2.787 1.865 -0.863 HN2 ABH 15
ABH HCA HCA H 0 1 N N N N N N 64.803 9.485 28.876 2.648 0.271 1.570 HCA ABH 16
ABH HOT1 1HOT H 0 0 N N N N N N 68.614 9.211 29.907 4.990 -2.006 0.081 HOT1 ABH 17
ABH HCB1 1HCB H 0 0 N N N N N N 65.221 11.713 28.007 1.379 -0.011 -1.191 HCB1 ABH 18
ABH HCB2 2HCB H 0 0 N N N N N N 64.267 11.857 29.418 1.370 -1.278 0.060 HCB2 ABH 19
ABH HCG1 1HCG H 0 0 N N N N N N 66.462 12.351 30.782 0.192 0.259 1.608 HCG1 ABH 20
ABH HCG2 2HCG H 0 0 N N N N N N 67.336 12.321 29.321 0.201 1.526 0.358 HCG2 ABH 21
ABH HCD1 1HCD H 0 0 N N N N N N 65.522 14.150 28.432 -1.118 0.055 -1.142 HCD1 ABH 22
ABH HCD2 2HCD H 0 0 N N N N N N 65.072 14.312 30.063 -1.127 -1.211 0.109 HCD2 ABH 23
ABH HCE1 1HCE H 0 0 N N N N N N 67.715 14.611 30.569 -2.305 0.326 1.657 HCE1 ABH 24
ABH HCE2 2HCE H 0 0 N N N N N N 67.885 14.815 28.871 -2.296 1.592 0.407 HCE2 ABH 25
ABH HO2 HO2 H 0 1 N N N N N N 67.858 18.190 30.101 -2.903 -1.816 -0.250 HO2 ABH 26
ABH HO1 HO1 H 0 1 N N N N N N 65.839 17.657 31.118 -4.683 1.437 0.358 HO1 ABH 27
ABH HO3 HO3 H 0 1 N N N N N N 65.891 18.003 28.824 -4.494 -0.240 -1.732 HO3 ABH 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ABH N CA SING N N 1
ABH N HN1 SING N N 2
ABH N HN2 SING N N 3
ABH CA C SING N N 4
ABH CA CB SING N N 5
ABH CA HCA SING N N 6
ABH C O DOUB N N 7
ABH C OT SING N N 8
ABH OT HOT1 SING N N 9
ABH CB CG SING N N 10
ABH CB HCB1 SING N N 11
ABH CB HCB2 SING N N 12
ABH CG CD SING N N 13
ABH CG HCG1 SING N N 14
ABH CG HCG2 SING N N 15
ABH CD CE SING N N 16
ABH CD HCD1 SING N N 17
ABH CD HCD2 SING N N 18
ABH CE B SING N N 19
ABH CE HCE1 SING N N 20
ABH CE HCE2 SING N N 21
ABH B O2 SING N N 22
ABH B O1 SING N N 23
ABH B O3 SING N N 24
ABH O2 HO2 SING N N 25
ABH O1 HO1 SING N N 26
ABH O3 HO3 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ABH SMILES ACDLabs 10.04 O=C(O)C(N)CCCC[B-](O)(O)O
ABH SMILES_CANONICAL CACTVS 3.341 N[C@@H](CCCC[B-](O)(O)O)C(O)=O
ABH SMILES CACTVS 3.341 N[CH](CCCC[B-](O)(O)O)C(O)=O
ABH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[B-](CCCC[C@@H](C(=O)O)N)(O)(O)O"
ABH SMILES "OpenEye OEToolkits" 1.5.0 "[B-](CCCCC(C(=O)O)N)(O)(O)O"
ABH InChI InChI 1.03 InChI=1S/C6H15BNO5/c8-5(6(9)10)3-1-2-4-7(11,12)13/h5,11-13H,1-4,8H2,(H,9,10)/q-1/t5-/m0/s1
ABH InChIKey InChI 1.03 BLVGFZFOWWBCCZ-YFKPBYRVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ABH "SYSTEMATIC NAME" ACDLabs 10.04 "[(5S)-5-amino-5-carboxypentyl](trihydroxy)borate(1-)"
ABH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(5S)-5-amino-6-hydroxy-6-oxo-hexyl]-trihydroxy-boron"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ABH 'Create component' 1999-10-07 RCSB
ABH 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id ABH
_pdbe_chem_comp_drugbank_details.drugbank_id DB01983
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '2(S)-Amino-6-Boronohexanoic Acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id ABH
_pdbe_chem_comp_synonyms.name '2(S)-Amino-6-Boronohexanoic Acid'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ABH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01983
_pdbe_chem_comp_drugbank_classification.parent 'L-alpha-amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id ABH
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01983
_pdbe_chem_comp_drugbank_targets.name Arginase-1
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P05089
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ABH N N 11.600 1.945 1
ABH CA C 11.600 0.445 2
ABH C C 12.899 -0.305 3
ABH O O 14.198 0.445 4
ABH OT O 12.899 -1.805 5
ABH CB C 10.301 -0.305 6
ABH CG C 9.002 0.445 7
ABH CD C 7.702 -0.305 8
ABH CE C 6.404 0.445 9
ABH B B 5.104 -0.305 10
ABH O2 O 3.805 -1.055 11
ABH O1 O 4.354 0.994 12
ABH O3 O 5.854 -1.604 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ABH CA N SINGLE BEGINDASH 1
ABH CA C SINGLE NONE 2
ABH CA CB SINGLE NONE 3
ABH C O DOUBLE NONE 4
ABH C OT SINGLE NONE 5
ABH CB CG SINGLE NONE 6
ABH CG CD SINGLE NONE 7
ABH CD CE SINGLE NONE 8
ABH CE B SINGLE NONE 9
ABH B O2 SINGLE NONE 10
ABH B O1 SINGLE NONE 11
ABH B O3 SINGLE NONE 12
#
_pdbe_chem_comp_substructure.comp_id ABH
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ABH O F1 1
ABH C F1 1
ABH CA F1 1
ABH N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ABH
_pdbe_chem_comp_rdkit_properties.exactmw 192.105
_pdbe_chem_comp_rdkit_properties.amw 192.000
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 97.543
_pdbe_chem_comp_rdkit_properties.tpsa 124.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.516
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.680
_pdbe_chem_comp_rdkit_properties.chi0v 6.066
_pdbe_chem_comp_rdkit_properties.chi1v 2.878
_pdbe_chem_comp_rdkit_properties.chi2v 0.686
_pdbe_chem_comp_rdkit_properties.chi3v 0.686
_pdbe_chem_comp_rdkit_properties.chi4v 0.266
_pdbe_chem_comp_rdkit_properties.chi0n 21.066
_pdbe_chem_comp_rdkit_properties.chi1n 9.905
_pdbe_chem_comp_rdkit_properties.chi2n 0.686
_pdbe_chem_comp_rdkit_properties.chi3n 0.686
_pdbe_chem_comp_rdkit_properties.chi4n 0.266
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.625
_pdbe_chem_comp_rdkit_properties.kappa1 2.302
_pdbe_chem_comp_rdkit_properties.kappa2 5.180
_pdbe_chem_comp_rdkit_properties.kappa3 7.727
_pdbe_chem_comp_rdkit_properties.Phi 0.917
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ABH UniChem DrugBank DB01983
ABH UniChem ZINC ZINC000169748469
ABH UniChem PubChem 444965
ABH UniChem 'Probes And Drugs' PD008245
ABH UniChem Nikkaji J943.713D
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ABH N 3.393 1.340 -0.140 ETKDGv3 1
ABH CA 2.746 0.280 0.640 ETKDGv3 2
ABH C 3.049 -1.091 0.088 ETKDGv3 3
ABH O 3.131 -2.075 0.871 ETKDGv3 4
ABH OT 3.193 -1.289 -1.283 ETKDGv3 5
ABH CB 1.228 0.527 0.770 ETKDGv3 6
ABH CG 0.462 0.464 -0.567 ETKDGv3 7
ABH CD -1.035 0.775 -0.401 ETKDGv3 8
ABH CE -1.805 -0.370 0.278 ETKDGv3 9
ABH B -3.406 -0.096 0.320 ETKDGv3 10
ABH O2 -3.947 0.002 -1.053 ETKDGv3 11
ABH O1 -3.674 1.177 1.019 ETKDGv3 12
ABH O3 -4.088 -1.193 1.045 ETKDGv3 13
ABH HN1 4.430 1.229 -0.050 ETKDGv3 14
ABH HN2 3.165 1.237 -1.154 ETKDGv3 15
ABH HCA 3.163 0.324 1.672 ETKDGv3 16
ABH HOT1 3.378 -2.211 -1.659 ETKDGv3 17
ABH HCB1 0.817 -0.230 1.470 ETKDGv3 18
ABH HCB2 1.072 1.526 1.232 ETKDGv3 19
ABH HCG1 0.881 1.219 -1.264 ETKDGv3 20
ABH HCG2 0.582 -0.536 -1.036 ETKDGv3 21
ABH HCD1 -1.160 1.717 0.176 ETKDGv3 22
ABH HCD2 -1.459 0.944 -1.415 ETKDGv3 23
ABH HCE1 -1.453 -0.498 1.323 ETKDGv3 24
ABH HCE2 -1.619 -1.320 -0.268 ETKDGv3 25
ABH HO2 -3.748 -0.858 -1.504 ETKDGv3 26
ABH HO1 -3.403 1.041 1.964 ETKDGv3 27
ABH HO3 -3.892 -2.030 0.552 ETKDGv3 28
#