data_AAE
#
_chem_comp.id AAE
_chem_comp.name 'ACETOACETIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C4 H6 O3'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces LIN
_chem_comp.formula_weight 102.089
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code AAE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1E3W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AAE O1 O1 O 0 1 N N N N N N 7.960 45.746 34.175 -0.664 0.000 -2.414 O1 AAE 1
AAE C2 C2 C 0 1 N N N N N N 8.556 45.069 35.002 -0.080 0.000 -1.205 C2 AAE 2
AAE O3 O3 O 0 1 N N N N N N 8.250 43.890 35.225 1.124 0.000 -1.116 O3 AAE 3
AAE C4 C4 C 0 1 N N N N N N 9.724 45.675 35.802 -0.929 0.000 0.039 C4 AAE 4
AAE C5 C5 C 0 1 N N N N N N 9.569 45.196 37.261 -0.037 0.000 1.254 C5 AAE 5
AAE O8 O8 O 0 1 N N N N N N 10.501 44.983 37.971 1.162 0.000 1.122 O8 AAE 6
AAE C9 C9 C 0 1 N N N N N N 8.110 44.943 37.712 -0.643 0.000 2.634 C9 AAE 7
AAE HO1 HO1 H 0 1 N N N N N N 8.194 46.650 34.003 -0.119 0.000 -3.214 HO1 AAE 8
AAE H41 1H4 H 0 1 N N N N N N 10.722 45.437 35.366 -1.558 -0.890 0.050 H41 AAE 9
AAE H42 2H4 H 0 1 N N N N N N 9.788 46.784 35.709 -1.558 0.890 0.050 H42 AAE 10
AAE H91 1H9 H 0 1 N N N N N N 7.998 44.597 38.766 0.150 0.000 3.380 H91 AAE 11
AAE H92 2H9 H 0 1 N N N N N N 7.488 45.852 37.536 -1.260 0.890 2.760 H92 AAE 12
AAE H93 3H9 H 0 1 N N N N N N 7.609 44.229 37.016 -1.260 -0.890 2.760 H93 AAE 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AAE O1 C2 SING N N 1
AAE O1 HO1 SING N N 2
AAE C2 O3 DOUB N N 3
AAE C2 C4 SING N N 4
AAE C4 C5 SING N N 5
AAE C4 H41 SING N N 6
AAE C4 H42 SING N N 7
AAE C5 O8 DOUB N N 8
AAE C5 C9 SING N N 9
AAE C9 H91 SING N N 10
AAE C9 H92 SING N N 11
AAE C9 H93 SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AAE SMILES ACDLabs 10.04 'O=C(C)CC(=O)O'
AAE SMILES_CANONICAL CACTVS 3.341 'CC(=O)CC(O)=O'
AAE SMILES CACTVS 3.341 'CC(=O)CC(O)=O'
AAE SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CC(=O)CC(=O)O'
AAE SMILES 'OpenEye OEToolkits' 1.5.0 'CC(=O)CC(=O)O'
AAE InChI InChI 1.03 'InChI=1S/C4H6O3/c1-3(5)2-4(6)7/h2H2,1H3,(H,6,7)'
AAE InChIKey InChI 1.03 WDJHALXBUFZDSR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AAE 'SYSTEMATIC NAME' ACDLabs 10.04 '3-oxobutanoic acid'
AAE 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '3-oxobutanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AAE 'Create component' 1999-07-08 RCSB
AAE 'Modify descriptor' 2011-06-04 RCSB
AAE 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id AAE
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C2
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id AAE
_pdbe_chem_comp_drugbank_details.drugbank_id DB01762
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Acetoacetic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 541-50-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
AAE '3-ketobutanoic acid' DrugBank ?
AAE '3-Ketobutyric acid' DrugBank ?
AAE '3-Oxobutanoic acid' DrugBank ?
AAE '3-Oxobutyric acid' DrugBank ?
AAE 'beta-Ketobutyric acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id AAE
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01762
_pdbe_chem_comp_drugbank_classification.parent 'Short-chain keto acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Keto acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as short-chain keto acids and derivatives. These are keto acids with an alkyl chain the contains less than 6 carbon atoms.'
#
_pdbe_chem_comp_drugbank_targets.comp_id AAE
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01762
_pdbe_chem_comp_drugbank_targets.name Fumarylacetoacetase
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P16930
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
AAE O1 O 4.299 -1.125 1
AAE C2 C 4.299 0.375 2
AAE O3 O 3.000 1.125 3
AAE C4 C 5.598 1.125 4
AAE C5 C 6.897 0.375 5
AAE O8 O 8.196 1.125 6
AAE C9 C 6.897 -1.125 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
AAE O1 C2 SINGLE NONE 1
AAE C2 O3 DOUBLE NONE 2
AAE C2 C4 SINGLE NONE 3
AAE C4 C5 SINGLE NONE 4
AAE C5 O8 DOUBLE NONE 5
AAE C5 C9 SINGLE NONE 6
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id AAE
_pdbe_chem_comp_rdkit_properties.exactmw 102.032
_pdbe_chem_comp_rdkit_properties.amw 102.089
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 49.468
_pdbe_chem_comp_rdkit_properties.tpsa 54.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.050
_pdbe_chem_comp_rdkit_properties.CrippenMR 22.934
_pdbe_chem_comp_rdkit_properties.chi0v 3.225
_pdbe_chem_comp_rdkit_properties.chi1v 1.362
_pdbe_chem_comp_rdkit_properties.chi2v 0.216
_pdbe_chem_comp_rdkit_properties.chi3v 0.216
_pdbe_chem_comp_rdkit_properties.chi4v 0.093
_pdbe_chem_comp_rdkit_properties.chi0n 9.225
_pdbe_chem_comp_rdkit_properties.chi1n 4.271
_pdbe_chem_comp_rdkit_properties.chi2n 0.216
_pdbe_chem_comp_rdkit_properties.chi3n 0.216
_pdbe_chem_comp_rdkit_properties.chi4n 0.093
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.860
_pdbe_chem_comp_rdkit_properties.kappa1 1.307
_pdbe_chem_comp_rdkit_properties.kappa2 2.337
_pdbe_chem_comp_rdkit_properties.kappa3 5.140
_pdbe_chem_comp_rdkit_properties.Phi 0.436
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
AAE UniChem DrugBank DB01762
AAE UniChem 'KEGG LIGAND' C00164
AAE UniChem ChEBI 15344
AAE UniChem ZINC ZINC000000895089
AAE UniChem fdasrs 4ZI204Y1MC
AAE UniChem SureChEMBL SCHEMBL6620
AAE UniChem HMDB HMDB0000060
AAE UniChem 'PubChem TPHARMA' 15041221
AAE UniChem PubChem 96
AAE UniChem NMRShiftDB 60020715
AAE UniChem 'EPA CompTox Dashboard' DTXSID00202441
AAE UniChem MetaboLights MTBLC15344
AAE UniChem BRENDA 10562
AAE UniChem BRENDA 112590
AAE UniChem BRENDA 112591
AAE UniChem BRENDA 125950
AAE UniChem BRENDA 214585
AAE UniChem BRENDA 22069
AAE UniChem BRENDA 23339
AAE UniChem BRENDA 419
AAE UniChem ChemicalBook CB71015921
AAE UniChem ClinicalTrials 'ACETOACETIC ACID'
AAE UniChem 'Probes And Drugs' PD008443
AAE UniChem CCDC PASXEQ
AAE UniChem Nikkaji J4.508J
AAE UniChem ACTor 541-50-4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
AAE O1 1.262 0.164 -1.689 ETKDGv3 1
AAE C2 0.724 1.095 -0.805 ETKDGv3 2
AAE O3 0.397 2.240 -1.218 ETKDGv3 3
AAE C4 0.495 0.718 0.623 ETKDGv3 4
AAE C5 -0.817 0.001 0.766 ETKDGv3 5
AAE O8 -1.862 0.611 0.599 ETKDGv3 6
AAE C9 -0.853 -1.453 1.125 ETKDGv3 7
AAE HO1 1.409 0.398 -2.664 ETKDGv3 8
AAE H41 1.329 0.066 0.961 ETKDGv3 9
AAE H42 0.495 1.626 1.264 ETKDGv3 10
AAE H91 -0.385 -1.604 2.120 ETKDGv3 11
AAE H92 -1.900 -1.823 1.161 ETKDGv3 12
AAE H93 -0.293 -2.038 0.365 ETKDGv3 13
#