data_9Z8
#
_chem_comp.id 9Z8
_chem_comp.name 6-(2-Mercaptoacetylamino)-N-phenylhexanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-02-14
_chem_comp.pdbx_modified_date 2014-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 280.386
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9Z8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CQF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9Z8 O01 O01 O 0 1 N N N N N N 57.298 44.059 25.162 5.919 -1.100 -0.156 O01 9Z8 1
9Z8 C02 C02 C 0 1 N N N N N N 57.998 43.971 26.170 5.668 0.069 0.046 C02 9Z8 2
9Z8 C03 C03 C 0 1 N N N N N N 58.553 42.647 26.587 6.788 1.059 0.231 C03 9Z8 3
9Z8 S04 S04 S 0 1 N N N N N N 59.691 41.754 25.567 8.381 0.202 0.098 S04 9Z8 4
9Z8 N05 N05 N 0 1 N N N N N N 58.251 45.114 26.997 4.386 0.483 0.099 N05 9Z8 5
9Z8 C06 C06 C 0 1 N N N N N N 57.741 46.419 26.700 3.297 -0.479 -0.086 C06 9Z8 6
9Z8 C07 C07 C 0 1 N N N N N N 56.381 46.762 27.199 1.954 0.245 0.020 C07 9Z8 7
9Z8 C08 C08 C 0 1 N N N N N N 56.208 47.596 28.420 0.816 -0.759 -0.174 C08 9Z8 8
9Z8 C09 C09 C 0 1 N N N N N N 55.251 48.735 28.283 -0.528 -0.035 -0.067 C09 9Z8 9
9Z8 C10 C10 C 0 1 N N N N N N 54.823 49.459 29.518 -1.665 -1.040 -0.261 C10 9Z8 10
9Z8 C11 C11 C 0 1 N N N N N N 53.424 49.302 30.017 -2.989 -0.327 -0.156 C11 9Z8 11
9Z8 O12 O12 O 0 1 N N N N N N 53.249 49.267 31.230 -3.019 0.868 0.054 O12 9Z8 12
9Z8 N13 N13 N 0 1 N N N N N N 52.337 49.211 29.073 -4.138 -1.016 -0.295 N13 9Z8 13
9Z8 C14 C14 C 0 1 Y N N N N N 50.941 49.089 29.416 -5.367 -0.374 -0.101 C14 9Z8 14
9Z8 C15 C15 C 0 1 Y N N N N N 50.210 48.008 28.911 -5.526 0.953 -0.480 C15 9Z8 15
9Z8 C16 C16 C 0 1 Y N N N N N 48.850 47.873 29.216 -6.739 1.584 -0.287 C16 9Z8 16
9Z8 C17 C17 C 0 1 Y N N N N N 48.202 48.834 29.998 -7.795 0.896 0.282 C17 9Z8 17
9Z8 C18 C18 C 0 1 Y N N N N N 48.916 49.931 30.487 -7.640 -0.426 0.660 C18 9Z8 18
9Z8 C19 C19 C 0 1 Y N N N N N 50.277 50.067 30.184 -6.431 -1.064 0.465 C19 9Z8 19
9Z8 H031 H031 H 0 0 N N N N N N 59.063 42.814 27.547 6.724 1.829 -0.538 H031 9Z8 20
9Z8 H032 H032 H 0 0 N N N N N N 57.689 41.984 26.741 6.706 1.522 1.215 H032 9Z8 21
9Z8 H05 H05 H 0 1 N N N N N N 58.809 44.995 27.818 4.185 1.418 0.261 H05 9Z8 22
9Z8 H061 H061 H 0 0 N N N N N N 58.442 47.151 27.128 3.384 -0.940 -1.070 H061 9Z8 23
9Z8 H062 H062 H 0 0 N N N N N N 57.725 46.524 25.605 3.357 -1.249 0.683 H062 9Z8 24
9Z8 H071 H071 H 0 0 N N N N N N 55.871 47.292 26.381 1.867 0.707 1.004 H071 9Z8 25
9Z8 H072 H072 H 0 0 N N N N N N 55.868 45.809 27.394 1.893 1.015 -0.749 H072 9Z8 26
9Z8 H081 H081 H 0 0 N N N N N N 55.847 46.944 29.229 0.903 -1.221 -1.158 H081 9Z8 27
9Z8 H082 H082 H 0 0 N N N N N N 57.191 48.008 28.692 0.876 -1.529 0.595 H082 9Z8 28
9Z8 H091 H091 H 0 0 N N N N N N 55.720 49.475 27.619 -0.614 0.426 0.917 H091 9Z8 29
9Z8 H092 H092 H 0 0 N N N N N N 54.342 48.340 27.807 -0.588 0.735 -0.836 H092 9Z8 30
9Z8 H101 H101 H 0 0 N N N N N N 55.490 49.130 30.329 -1.578 -1.501 -1.245 H101 9Z8 31
9Z8 H102 H102 H 0 0 N N N N N N 54.976 50.532 29.329 -1.605 -1.810 0.508 H102 9Z8 32
9Z8 H13 H13 H 0 1 N N N N N N 52.570 49.234 28.101 -4.115 -1.957 -0.529 H13 9Z8 33
9Z8 H15 H15 H 0 1 N N N N N N 50.696 47.275 28.284 -4.701 1.491 -0.924 H15 9Z8 34
9Z8 H19 H19 H 0 1 N N N N N N 50.822 50.928 30.542 -6.312 -2.097 0.756 H19 9Z8 35
9Z8 H16 H16 H 0 1 N N N N N N 48.298 47.022 28.845 -6.863 2.615 -0.581 H16 9Z8 36
9Z8 H17 H17 H 0 1 N N N N N N 47.151 48.729 30.224 -8.743 1.391 0.431 H17 9Z8 37
9Z8 H18 H18 H 0 1 N N N N N N 48.420 50.672 31.097 -8.467 -0.960 1.104 H18 9Z8 38
9Z8 H32 H32 H 0 1 N N N N N N 59.915 40.690 26.280 9.274 1.191 0.280 H32 9Z8 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9Z8 O01 C02 DOUB N N 1
9Z8 C02 C03 SING N N 2
9Z8 C02 N05 SING N N 3
9Z8 C03 S04 SING N N 4
9Z8 N05 C06 SING N N 5
9Z8 C06 C07 SING N N 6
9Z8 C07 C08 SING N N 7
9Z8 C08 C09 SING N N 8
9Z8 C09 C10 SING N N 9
9Z8 C10 C11 SING N N 10
9Z8 C11 O12 DOUB N N 11
9Z8 C11 N13 SING N N 12
9Z8 N13 C14 SING N N 13
9Z8 C14 C15 SING Y N 14
9Z8 C14 C19 DOUB Y N 15
9Z8 C15 C16 DOUB Y N 16
9Z8 C16 C17 SING Y N 17
9Z8 C17 C18 DOUB Y N 18
9Z8 C18 C19 SING Y N 19
9Z8 C03 H031 SING N N 20
9Z8 C03 H032 SING N N 21
9Z8 N05 H05 SING N N 22
9Z8 C06 H061 SING N N 23
9Z8 C06 H062 SING N N 24
9Z8 C07 H071 SING N N 25
9Z8 C07 H072 SING N N 26
9Z8 C08 H081 SING N N 27
9Z8 C08 H082 SING N N 28
9Z8 C09 H091 SING N N 29
9Z8 C09 H092 SING N N 30
9Z8 C10 H101 SING N N 31
9Z8 C10 H102 SING N N 32
9Z8 N13 H13 SING N N 33
9Z8 C15 H15 SING N N 34
9Z8 C19 H19 SING N N 35
9Z8 C16 H16 SING N N 36
9Z8 C17 H17 SING N N 37
9Z8 C18 H18 SING N N 38
9Z8 S04 H32 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9Z8 SMILES ACDLabs 12.01 O=C(Nc1ccccc1)CCCCCNC(=O)CS
9Z8 InChI InChI 1.03 InChI=1S/C14H20N2O2S/c17-13(16-12-7-3-1-4-8-12)9-5-2-6-10-15-14(18)11-19/h1,3-4,7-8,19H,2,5-6,9-11H2,(H,15,18)(H,16,17)
9Z8 InChIKey InChI 1.03 ICMLRCZXRBTKLJ-UHFFFAOYSA-N
9Z8 SMILES_CANONICAL CACTVS 3.385 SCC(=O)NCCCCCC(=O)Nc1ccccc1
9Z8 SMILES CACTVS 3.385 SCC(=O)NCCCCCC(=O)Nc1ccccc1
9Z8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)NC(=O)CCCCCNC(=O)CS
9Z8 SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)NC(=O)CCCCCNC(=O)CS
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9Z8 "SYSTEMATIC NAME" ACDLabs 12.01 N-phenyl-6-[(sulfanylacetyl)amino]hexanamide
9Z8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-phenyl-6-(2-sulfanylethanoylamino)hexanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9Z8 'Create component' 2014-02-14 EBI
9Z8 'Initial release' 2014-04-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9Z8 O01 O 8.196 6.143 1
9Z8 C02 C 9.495 5.393 2
9Z8 C03 C 10.794 6.143 3
9Z8 S04 S 10.794 7.643 4
9Z8 N05 N 9.495 3.893 5
9Z8 C06 C 8.196 3.143 6
9Z8 C07 C 8.196 1.643 7
9Z8 C08 C 6.897 0.892 8
9Z8 C09 C 6.897 -0.608 9
9Z8 C10 C 5.598 -1.357 10
9Z8 C11 C 5.598 -2.857 11
9Z8 O12 O 6.897 -3.607 12
9Z8 N13 N 4.299 -3.607 13
9Z8 C14 C 4.299 -5.107 14
9Z8 C15 C 3.000 -5.857 15
9Z8 C16 C 3.000 -7.357 16
9Z8 C17 C 4.299 -8.107 17
9Z8 C18 C 5.598 -7.357 18
9Z8 C19 C 5.598 -5.857 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9Z8 O01 C02 DOUBLE NONE 1
9Z8 C02 C03 SINGLE NONE 2
9Z8 C02 N05 SINGLE NONE 3
9Z8 C03 S04 SINGLE NONE 4
9Z8 N05 C06 SINGLE NONE 5
9Z8 C06 C07 SINGLE NONE 6
9Z8 C07 C08 SINGLE NONE 7
9Z8 C08 C09 SINGLE NONE 8
9Z8 C09 C10 SINGLE NONE 9
9Z8 C10 C11 SINGLE NONE 10
9Z8 C11 O12 DOUBLE NONE 11
9Z8 C11 N13 SINGLE NONE 12
9Z8 N13 C14 SINGLE NONE 13
9Z8 C14 C15 DOUBLE NONE 14
9Z8 C14 C19 SINGLE NONE 15
9Z8 C15 C16 SINGLE NONE 16
9Z8 C16 C17 DOUBLE NONE 17
9Z8 C17 C18 SINGLE NONE 18
9Z8 C18 C19 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9Z8 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9Z8 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9Z8 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9Z8 C14 S1 1
9Z8 C15 S1 1
9Z8 C16 S1 1
9Z8 C17 S1 1
9Z8 C18 S1 1
9Z8 C19 S1 1
9Z8 N05 F1 1
9Z8 C02 F1 1
9Z8 O01 F1 1
9Z8 C03 F1 1
9Z8 N13 F1 2
9Z8 C11 F1 2
9Z8 O12 F1 2
9Z8 C10 F1 2
9Z8 C14 F2 1
9Z8 C15 F2 1
9Z8 C16 F2 1
9Z8 C17 F2 1
9Z8 C18 F2 1
9Z8 C19 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9Z8
_pdbe_chem_comp_rdkit_properties.exactmw 280.125
_pdbe_chem_comp_rdkit_properties.amw 280.393
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 146.825
_pdbe_chem_comp_rdkit_properties.tpsa 58.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.851
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.578
_pdbe_chem_comp_rdkit_properties.chi0v 9.936
_pdbe_chem_comp_rdkit_properties.chi1v 4.915
_pdbe_chem_comp_rdkit_properties.chi2v 1.470
_pdbe_chem_comp_rdkit_properties.chi3v 1.470
_pdbe_chem_comp_rdkit_properties.chi4v 0.720
_pdbe_chem_comp_rdkit_properties.chi0n 29.119
_pdbe_chem_comp_rdkit_properties.chi1n 14.309
_pdbe_chem_comp_rdkit_properties.chi2n 1.295
_pdbe_chem_comp_rdkit_properties.chi3n 1.295
_pdbe_chem_comp_rdkit_properties.chi4n 0.674
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.490
_pdbe_chem_comp_rdkit_properties.kappa1 3.392
_pdbe_chem_comp_rdkit_properties.kappa2 9.441
_pdbe_chem_comp_rdkit_properties.kappa3 7.513
_pdbe_chem_comp_rdkit_properties.Phi 1.686
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9Z8 UniChem ZINC ZINC000013609328
9Z8 UniChem SureChEMBL SCHEMBL5998899
9Z8 UniChem 'PubChem TPHARMA' 16535467
9Z8 UniChem PubChem 11437457
9Z8 UniChem Nikkaji J2.120.646F
9Z8 UniChem BindingDb 50157884
9Z8 UniChem 'EPA CompTox Dashboard' DTXSID50465903
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9Z8 O01 5.492 -1.219 -0.617 ETKDGv3 1
9Z8 C02 5.384 -0.809 0.570 ETKDGv3 2
9Z8 C03 6.602 -0.725 1.433 ETKDGv3 3
9Z8 S04 6.746 -2.236 2.430 ETKDGv3 4
9Z8 N05 4.098 -0.473 1.108 ETKDGv3 5
9Z8 C06 2.871 -0.540 0.317 ETKDGv3 6
9Z8 C07 2.786 0.656 -0.641 ETKDGv3 7
9Z8 C08 1.580 0.571 -1.590 ETKDGv3 8
9Z8 C09 0.243 0.803 -0.871 ETKDGv3 9
9Z8 C10 -0.917 0.842 -1.870 ETKDGv3 10
9Z8 C11 -2.218 1.052 -1.157 ETKDGv3 11
9Z8 O12 -2.637 2.226 -0.972 ETKDGv3 12
9Z8 N13 -2.927 -0.072 -0.614 ETKDGv3 13
9Z8 C14 -4.260 0.002 -0.078 ETKDGv3 14
9Z8 C15 -4.624 -0.830 0.913 ETKDGv3 15
9Z8 C16 -5.992 -0.780 1.469 ETKDGv3 16
9Z8 C17 -6.886 0.084 0.974 ETKDGv3 17
9Z8 C18 -6.509 0.979 -0.138 ETKDGv3 18
9Z8 C19 -5.268 0.940 -0.641 ETKDGv3 19
9Z8 H031 6.528 0.155 2.106 ETKDGv3 20
9Z8 H032 7.510 -0.613 0.803 ETKDGv3 21
9Z8 H05 4.023 -0.226 2.121 ETKDGv3 22
9Z8 H061 2.842 -1.498 -0.248 ETKDGv3 23
9Z8 H062 2.002 -0.524 1.008 ETKDGv3 24
9Z8 H071 3.707 0.690 -1.261 ETKDGv3 25
9Z8 H072 2.744 1.601 -0.056 ETKDGv3 26
9Z8 H081 1.706 1.351 -2.373 ETKDGv3 27
9Z8 H082 1.571 -0.418 -2.099 ETKDGv3 28
9Z8 H091 0.063 -0.018 -0.143 ETKDGv3 29
9Z8 H092 0.282 1.767 -0.317 ETKDGv3 30
9Z8 H101 -0.759 1.666 -2.600 ETKDGv3 31
9Z8 H102 -0.960 -0.114 -2.437 ETKDGv3 32
9Z8 H13 -2.413 -0.980 -0.540 ETKDGv3 33
9Z8 H15 -3.914 -1.536 1.327 ETKDGv3 34
9Z8 H19 -5.021 1.577 -1.480 ETKDGv3 35
9Z8 H16 -6.269 -1.442 2.279 ETKDGv3 36
9Z8 H17 -7.889 0.121 1.379 ETKDGv3 37
9Z8 H18 -7.242 1.658 -0.553 ETKDGv3 38
9Z8 H32 7.925 -1.787 3.057 ETKDGv3 39
#