data_9HA
#
_chem_comp.id 9HA
_chem_comp.name
'benzyl [(2S,3R)-1-({(2S)-1-[2-acetyl-2-(3-amino-3-oxopropyl)hydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C30 H47 N5 O7'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 589.723
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9HA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7SH9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9HA N N1 N 0 1 N N N N N N -9.172 -18.914 -17.424 3.280 -0.324 -0.196 N 9HA 1
9HA C C1 C 0 1 Y N N N N N -5.757 -23.534 -20.107 10.030 2.033 0.363 C 9HA 2
9HA O O1 O 0 1 N N N N N N -7.219 -20.116 -16.824 5.509 0.252 -0.576 O 9HA 3
9HA C1 C2 C 0 1 Y N N N N N -5.564 -22.199 -20.479 9.823 0.668 0.445 C1 9HA 4
9HA C10 C3 C 0 1 N N S N N N -9.973 -14.348 -17.369 -1.483 0.536 0.181 C10 9HA 5
9HA C11 C4 C 0 1 N N N N N N -11.443 -14.104 -17.150 -2.770 -0.193 -0.107 C11 9HA 6
9HA C12 C5 C 0 1 N N N N N N -13.828 -14.285 -14.848 -6.176 -0.092 -0.225 C12 9HA 7
9HA C13 C6 C 0 1 N N N N N N -14.362 -15.416 -15.723 -6.133 -0.422 -1.718 C13 9HA 8
9HA C14 C7 C 0 1 N N N N N N -15.218 -16.345 -14.860 -7.313 0.213 -2.407 C14 9HA 9
9HA C15 C8 C 0 1 N N N N N N -13.648 -12.213 -16.112 -5.097 -1.990 0.858 C15 9HA 10
9HA C16 C9 C 0 1 N N N N N N -12.806 -11.018 -16.548 -3.917 -2.625 1.546 C16 9HA 11
9HA C18 C10 C 0 1 N N R N N N -11.305 -18.666 -18.501 1.837 -2.290 -0.383 C18 9HA 12
9HA C2 C11 C 0 1 Y N N N N N -5.590 -21.196 -19.515 8.719 0.099 -0.162 C2 9HA 13
9HA C20 C12 C 0 1 N N N N N N -11.615 -20.937 -19.337 0.985 -3.507 1.498 C20 9HA 14
9HA C21 C13 C 0 1 N N N N N N -10.775 -21.600 -18.247 -0.463 -3.125 1.181 C21 9HA 15
9HA C22 C14 C 0 1 N N N N N N -11.477 -21.747 -20.622 1.149 -3.672 3.010 C22 9HA 16
9HA C23 C15 C 0 1 N N N N N N -13.095 -20.952 -18.948 1.329 -4.824 0.800 C23 9HA 17
9HA C24 C16 C 0 1 N N N N N N -9.312 -13.209 -18.167 -1.601 1.985 -0.295 C24 9HA 18
9HA C25 C17 C 0 1 N N N N N N -7.797 -13.387 -18.339 -2.647 2.716 0.549 C25 9HA 19
9HA C26 C18 C 0 1 N N N N N N -7.116 -13.572 -16.987 -2.905 4.102 -0.047 C26 9HA 20
9HA C27 C19 C 0 1 N N N N N N -5.600 -13.712 -17.150 -3.951 4.833 0.797 C27 9HA 21
9HA C28 C20 C 0 1 N N N N N N -4.998 -12.484 -17.812 -3.437 4.981 2.231 C28 9HA 22
9HA C29 C21 C 0 1 N N N N N N -5.668 -12.274 -19.165 -3.179 3.595 2.826 C29 9HA 23
9HA C3 C22 C 0 1 Y N N N N N -5.815 -21.520 -18.170 7.822 0.894 -0.851 C3 9HA 24
9HA C30 C23 C 0 1 N N N N N N -7.192 -12.154 -19.013 -2.133 2.864 1.982 C30 9HA 25
9HA C4 C24 C 0 1 Y N N N N N -6.011 -22.850 -17.797 8.029 2.258 -0.933 C4 9HA 26
9HA C5 C25 C 0 1 Y N N N N N -5.980 -23.854 -18.768 9.133 2.828 -0.326 C5 9HA 27
9HA C6 C26 C 0 1 N N N N N N -5.855 -20.441 -17.108 6.618 0.273 -1.512 C6 9HA 28
9HA C60 C27 C 0 1 N N N N N N -12.352 -17.627 -18.909 2.988 -3.070 -1.021 C60 9HA 29
9HA C7 C28 C 0 1 N N N N N N -7.945 -19.271 -17.760 4.349 -0.274 -1.014 C7 9HA 30
9HA C8 C29 C 0 1 N N S N N N -9.959 -18.007 -18.217 1.991 -0.801 -0.702 C8 9HA 31
9HA C9 C30 C 0 1 N N N N N N -10.145 -16.730 -17.451 0.876 -0.029 -0.046 C9 9HA 32
9HA N1 N2 N 0 1 N N N N N N -9.795 -15.605 -18.068 -0.381 -0.122 -0.524 N1 9HA 33
9HA N2 N3 N 0 1 N N N N N N -11.806 -13.618 -15.961 -3.858 0.032 0.656 N2 9HA 34
9HA N3 N4 N 0 1 N N N N N N -13.077 -13.341 -15.683 -5.028 -0.709 0.445 N3 9HA 35
9HA N4 N5 N 0 1 N N N N N N -16.095 -17.122 -15.479 -7.483 0.056 -3.735 N4 9HA 36
9HA O1 O2 O 0 1 N N N N N N -7.400 -18.923 -18.800 4.267 -0.704 -2.148 O1 9HA 37
9HA O2 O3 O 0 1 N N N N N N -10.588 -16.754 -16.307 1.109 0.677 0.912 O2 9HA 38
9HA O3 O4 O 0 1 N N N N N N -12.245 -14.355 -18.038 -2.827 -0.983 -1.026 O3 9HA 39
9HA O4 O5 O 0 1 N N N N N N -15.109 -16.373 -13.652 -8.110 0.865 -1.766 O4 9HA 40
9HA O5 O6 O 0 1 N N N N N N -14.864 -12.132 -16.134 -6.110 -2.632 0.675 O5 9HA 41
9HA O6 O7 O 0 1 N N N N N N -11.103 -19.607 -19.555 1.861 -2.478 1.033 O6 9HA 42
9HA H1 H1 H 0 1 N N N N N N -9.569 -19.289 -16.586 3.365 -0.048 0.730 H1 9HA 43
9HA H2 H2 H 0 1 N N N N N N -5.733 -24.314 -20.854 10.890 2.478 0.841 H2 9HA 44
9HA H3 H3 H 0 1 N N N N N N -5.395 -21.947 -21.515 10.524 0.047 0.982 H3 9HA 45
9HA H4 H4 H 0 1 N N N N N N -9.480 -14.407 -16.387 -1.289 0.521 1.254 H4 9HA 46
9HA H5 H5 H 0 1 N N N N N N -14.669 -13.763 -14.368 -6.137 0.989 -0.090 H5 9HA 47
9HA H6 H6 H 0 1 N N N N N N -13.165 -14.700 -14.075 -7.099 -0.479 0.206 H6 9HA 48
9HA H7 H7 H 0 1 N N N N N N -13.521 -15.980 -16.152 -5.209 -0.035 -2.149 H7 9HA 49
9HA H8 H8 H 0 1 N N N N N N -14.974 -14.997 -16.535 -6.172 -1.503 -1.853 H8 9HA 50
9HA H9 H9 H 0 1 N N N N N N -13.468 -10.190 -16.843 -3.106 -1.900 1.620 H9 9HA 51
9HA H10 H10 H 0 1 N N N N N N -12.166 -10.696 -15.713 -4.209 -2.947 2.546 H10 9HA 52
9HA H11 H11 H 0 1 N Y N N N N -12.176 -11.306 -17.403 -3.581 -3.488 0.971 H11 9HA 53
9HA H12 H12 H 0 1 N N N N N N -11.650 -19.180 -17.592 0.889 -2.651 -0.781 H12 9HA 54
9HA H13 H13 H 0 1 N N N N N N -5.437 -20.167 -19.803 8.557 -0.967 -0.099 H13 9HA 55
9HA H14 H14 H 0 1 N N N N N N -10.865 -21.025 -17.313 -1.137 -3.857 1.624 H14 9HA 56
9HA H15 H15 H 0 1 N N N N N N -11.133 -22.627 -18.082 -0.677 -2.138 1.592 H15 9HA 57
9HA H16 H16 H 0 1 N N N N N N -9.721 -21.626 -18.561 -0.605 -3.107 0.100 H16 9HA 58
9HA H17 H17 H 0 1 N N N N N N -11.867 -22.763 -20.459 2.180 -3.944 3.236 H17 9HA 59
9HA H18 H18 H 0 1 N N N N N N -12.048 -21.259 -21.426 0.904 -2.733 3.507 H18 9HA 60
9HA H19 H19 H 0 1 N N N N N N -10.416 -21.803 -20.908 0.480 -4.456 3.365 H19 9HA 61
9HA H20 H20 H 0 1 N N N N N N -13.237 -20.376 -18.022 1.199 -4.710 -0.276 H20 9HA 62
9HA H21 H21 H 0 1 N N N N N N -13.691 -20.501 -19.755 2.364 -5.089 1.015 H21 9HA 63
9HA H22 H22 H 0 1 N N N N N N -13.421 -21.990 -18.788 0.669 -5.611 1.165 H22 9HA 64
9HA H23 H23 H 0 1 N N N N N N -9.494 -12.261 -17.639 -0.637 2.482 -0.189 H23 9HA 65
9HA H24 H24 H 0 1 N N N N N N -9.774 -13.168 -19.164 -1.904 2.000 -1.342 H24 9HA 66
9HA H25 H25 H 0 1 N N N N N N -7.607 -14.271 -18.965 -3.575 2.144 0.552 H25 9HA 67
9HA H26 H26 H 0 1 N N N N N N -7.330 -12.698 -16.354 -1.977 4.674 -0.050 H26 9HA 68
9HA H27 H27 H 0 1 N N N N N N -7.511 -14.479 -16.506 -3.271 3.997 -1.068 H27 9HA 69
9HA H28 H28 H 0 1 N N N N N N -5.387 -14.594 -17.771 -4.134 5.820 0.373 H28 9HA 70
9HA H29 H29 H 0 1 N N N N N N -5.144 -13.843 -16.158 -4.878 4.261 0.801 H29 9HA 71
9HA H30 H30 H 0 1 N N N N N N -3.918 -12.633 -17.954 -2.509 5.553 2.227 H30 9HA 72
9HA H31 H31 H 0 1 N N N N N N -5.166 -11.602 -17.176 -4.182 5.502 2.832 H31 9HA 73
9HA H32 H32 H 0 1 N N N N N N -5.438 -13.130 -19.817 -2.813 3.701 3.847 H32 9HA 74
9HA H33 H33 H 0 1 N N N N N N -5.278 -11.351 -19.620 -4.107 3.023 2.830 H33 9HA 75
9HA H34 H34 H 0 1 N N N N N N -7.420 -11.267 -18.403 -1.950 1.877 2.406 H34 9HA 76
9HA H35 H35 H 0 1 N N N N N N -7.641 -12.038 -20.011 -1.205 3.436 1.978 H35 9HA 77
9HA H36 H36 H 0 1 N N N N N N -6.186 -23.102 -16.762 7.328 2.880 -1.470 H36 9HA 78
9HA H37 H37 H 0 1 N N N N N N -6.130 -24.884 -18.480 9.292 3.894 -0.386 H37 9HA 79
9HA H38 H38 H 0 1 N N N N N N -5.365 -20.806 -16.193 6.856 -0.746 -1.817 H38 9HA 80
9HA H39 H39 H 0 1 N N N N N N -5.331 -19.545 -17.473 6.343 0.860 -2.389 H39 9HA 81
9HA H40 H40 H 0 1 N N N N N N -12.497 -16.910 -18.088 3.928 -2.777 -0.555 H40 9HA 82
9HA H41 H41 H 0 1 N N N N N N -12.007 -17.092 -19.806 2.828 -4.138 -0.876 H41 9HA 83
9HA H42 H42 H 0 1 N N N N N N -13.305 -18.132 -19.126 3.028 -2.851 -2.088 H42 9HA 84
9HA H43 H43 H 0 1 N N N N N N -9.453 -17.793 -19.170 1.948 -0.655 -1.782 H43 9HA 85
9HA H44 H44 H 0 1 N N N N N N -9.417 -15.626 -18.994 -0.555 -0.625 -1.335 H44 9HA 86
9HA H45 H45 H 0 1 N N N N N N -11.107 -13.459 -15.264 -3.831 0.708 1.351 H45 9HA 87
9HA H46 H46 H 0 1 N N N N N N -16.676 -17.740 -14.950 -6.846 -0.466 -4.247 H46 9HA 88
9HA H47 H47 H 0 1 N N N N N N -16.176 -17.090 -16.475 -8.243 0.465 -4.178 H47 9HA 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9HA C22 C20 SING N N 1
9HA C1 C DOUB Y N 2
9HA C1 C2 SING Y N 3
9HA C C5 SING Y N 4
9HA O6 C20 SING N N 5
9HA O6 C18 SING N N 6
9HA C2 C3 DOUB Y N 7
9HA C20 C23 SING N N 8
9HA C20 C21 SING N N 9
9HA C29 C30 SING N N 10
9HA C29 C28 SING N N 11
9HA C30 C25 SING N N 12
9HA C60 C18 SING N N 13
9HA O1 C7 DOUB N N 14
9HA C5 C4 DOUB Y N 15
9HA C18 C8 SING N N 16
9HA C25 C24 SING N N 17
9HA C25 C26 SING N N 18
9HA C8 C9 SING N N 19
9HA C8 N SING N N 20
9HA C3 C4 SING Y N 21
9HA C3 C6 SING N N 22
9HA C24 C10 SING N N 23
9HA N1 C9 SING N N 24
9HA N1 C10 SING N N 25
9HA O3 C11 DOUB N N 26
9HA C28 C27 SING N N 27
9HA C7 N SING N N 28
9HA C7 O SING N N 29
9HA C9 O2 DOUB N N 30
9HA C10 C11 SING N N 31
9HA C27 C26 SING N N 32
9HA C11 N2 SING N N 33
9HA C6 O SING N N 34
9HA C16 C15 SING N N 35
9HA O5 C15 DOUB N N 36
9HA C15 N3 SING N N 37
9HA N2 N3 SING N N 38
9HA C13 C14 SING N N 39
9HA C13 C12 SING N N 40
9HA N3 C12 SING N N 41
9HA N4 C14 SING N N 42
9HA C14 O4 DOUB N N 43
9HA N H1 SING N N 44
9HA C H2 SING N N 45
9HA C1 H3 SING N N 46
9HA C10 H4 SING N N 47
9HA C12 H5 SING N N 48
9HA C12 H6 SING N N 49
9HA C13 H7 SING N N 50
9HA C13 H8 SING N N 51
9HA C16 H9 SING N N 52
9HA C16 H10 SING N N 53
9HA C16 H11 SING N N 54
9HA C18 H12 SING N N 55
9HA C2 H13 SING N N 56
9HA C21 H14 SING N N 57
9HA C21 H15 SING N N 58
9HA C21 H16 SING N N 59
9HA C22 H17 SING N N 60
9HA C22 H18 SING N N 61
9HA C22 H19 SING N N 62
9HA C23 H20 SING N N 63
9HA C23 H21 SING N N 64
9HA C23 H22 SING N N 65
9HA C24 H23 SING N N 66
9HA C24 H24 SING N N 67
9HA C25 H25 SING N N 68
9HA C26 H26 SING N N 69
9HA C26 H27 SING N N 70
9HA C27 H28 SING N N 71
9HA C27 H29 SING N N 72
9HA C28 H30 SING N N 73
9HA C28 H31 SING N N 74
9HA C29 H32 SING N N 75
9HA C29 H33 SING N N 76
9HA C30 H34 SING N N 77
9HA C30 H35 SING N N 78
9HA C4 H36 SING N N 79
9HA C5 H37 SING N N 80
9HA C6 H38 SING N N 81
9HA C6 H39 SING N N 82
9HA C60 H40 SING N N 83
9HA C60 H41 SING N N 84
9HA C60 H42 SING N N 85
9HA C8 H43 SING N N 86
9HA N1 H44 SING N N 87
9HA N2 H45 SING N N 88
9HA N4 H46 SING N N 89
9HA N4 H47 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9HA SMILES ACDLabs 12.01 'CC(=O)N(CCC(N)=O)NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C(C)OC(C)(C)C)CC1CCCCC1'
9HA InChI InChI 1.03 'InChI=1S/C30H47N5O7/c1-20(42-30(3,4)5)26(33-29(40)41-19-23-14-10-7-11-15-23)28(39)32-24(18-22-12-8-6-9-13-22)27(38)34-35(21(2)36)17-16-25(31)37/h7,10-11,14-15,20,22,24,26H,6,8-9,12-13,16-19H2,1-5H3,(H2,31,37)(H,32,39)(H,33,40)(H,34,38)/t20-,24+,26+/m1/s1'
9HA InChIKey InChI 1.03 SHNDMVPNEQWUDZ-PSUQPPDWSA-N
9HA SMILES_CANONICAL CACTVS 3.385 'C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(=O)NN(CCC(N)=O)C(C)=O'
9HA SMILES CACTVS 3.385 'C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(=O)NN(CCC(N)=O)C(C)=O'
9HA SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'C[C@H]([C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)NN(CCC(=O)N)C(=O)C)NC(=O)OCc2ccccc2)OC(C)(C)C'
9HA SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C(C(=O)NC(CC1CCCCC1)C(=O)NN(CCC(=O)N)C(=O)C)NC(=O)OCc2ccccc2)OC(C)(C)C'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9HA 'SYSTEMATIC NAME' ACDLabs 12.01 'benzyl [(2S,3R)-1-({(2S)-1-[2-acetyl-2-(3-amino-3-oxopropyl)hydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)'
9HA 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[2-(3-azanyl-3-oxidanylidene-propyl)-2-ethanoyl-hydrazinyl]-3-cyclohexyl-1-oxidanylidene-propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9HA 'Create component' 2021-10-13 RCSB
9HA 'Initial release' 2023-04-12 RCSB
9HA 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 9HA
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C16
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9HA N N 8.196 1.965 1
9HA C C 3.000 7.965 2
9HA O O 6.897 4.215 3
9HA C1 C 4.299 8.715 4
9HA C10 C 10.794 -2.535 5
9HA C11 C 12.093 -3.285 6
9HA C12 C 14.691 -4.785 7
9HA C13 C 15.990 -5.535 8
9HA C14 C 15.990 -7.035 9
9HA C15 C 15.990 -2.535 10
9HA C16 C 15.990 -1.035 11
9HA C18 C 10.794 1.965 12
9HA C2 C 5.598 7.965 13
9HA C20 C 12.093 4.215 14
9HA C21 C 12.843 2.916 15
9HA C22 C 13.392 4.965 16
9HA C23 C 11.343 5.514 17
9HA C24 C 9.495 -3.285 18
9HA C25 C 9.495 -4.785 19
9HA C26 C 10.794 -5.535 20
9HA C27 C 10.794 -7.035 21
9HA C28 C 9.495 -7.785 22
9HA C29 C 8.196 -7.035 23
9HA C3 C 5.598 6.465 24
9HA C30 C 8.196 -5.535 25
9HA C4 C 4.299 5.715 26
9HA C5 C 3.000 6.465 27
9HA C6 C 6.897 5.715 28
9HA C60 C 12.093 1.215 29
9HA C7 C 8.196 3.465 30
9HA C8 C 9.495 1.215 31
9HA C9 C 9.495 -0.285 32
9HA N1 N 10.794 -1.035 33
9HA N2 N 13.392 -2.535 34
9HA N3 N 14.691 -3.285 35
9HA N4 N 14.691 -7.785 36
9HA O1 O 9.495 4.215 37
9HA O2 O 8.196 -1.035 38
9HA O3 O 12.093 -4.785 39
9HA O4 O 17.290 -7.785 40
9HA O5 O 17.290 -3.285 41
9HA O6 O 10.794 3.465 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9HA C22 C20 SINGLE NONE 1
9HA C1 C DOUBLE NONE 2
9HA C1 C2 SINGLE NONE 3
9HA C C5 SINGLE NONE 4
9HA O6 C20 SINGLE NONE 5
9HA O6 C18 SINGLE NONE 6
9HA C2 C3 DOUBLE NONE 7
9HA C20 C23 SINGLE NONE 8
9HA C20 C21 SINGLE NONE 9
9HA C29 C30 SINGLE NONE 10
9HA C29 C28 SINGLE NONE 11
9HA C30 C25 SINGLE NONE 12
9HA C18 C60 SINGLE BEGINDASH 13
9HA O1 C7 DOUBLE NONE 14
9HA C5 C4 DOUBLE NONE 15
9HA C18 C8 SINGLE NONE 16
9HA C25 C24 SINGLE NONE 17
9HA C25 C26 SINGLE NONE 18
9HA C8 C9 SINGLE NONE 19
9HA C8 N SINGLE BEGINWEDGE 20
9HA C3 C4 SINGLE NONE 21
9HA C3 C6 SINGLE NONE 22
9HA C10 C24 SINGLE BEGINDASH 23
9HA N1 C9 SINGLE NONE 24
9HA N1 C10 SINGLE NONE 25
9HA O3 C11 DOUBLE NONE 26
9HA C28 C27 SINGLE NONE 27
9HA C7 N SINGLE NONE 28
9HA C7 O SINGLE NONE 29
9HA C9 O2 DOUBLE NONE 30
9HA C10 C11 SINGLE NONE 31
9HA C27 C26 SINGLE NONE 32
9HA C11 N2 SINGLE NONE 33
9HA C6 O SINGLE NONE 34
9HA C16 C15 SINGLE NONE 35
9HA O5 C15 DOUBLE NONE 36
9HA C15 N3 SINGLE NONE 37
9HA N2 N3 SINGLE NONE 38
9HA C13 C14 SINGLE NONE 39
9HA C13 C12 SINGLE NONE 40
9HA N3 C12 SINGLE NONE 41
9HA N4 C14 SINGLE NONE 42
9HA C14 O4 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9HA MurckoScaffold S1 scaffold O=C(CNC(=O)OCc1ccccc1)NCCC1CCCCC1 InChI=1S/C18H26N2O3/c21-17(19-12-11-15-7-3-1-4-8-15)13-20-18(22)23-14-16-9-5-2-6-10-16/h2,5-6,9-10,15H,1,3-4,7-8,11-14H2,(H,19,21)(H,20,22) OZZBVBMZIWBLDG-UHFFFAOYSA-N
9HA amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9HA cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9HA peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
9HA phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9HA Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9HA N S1 1
9HA C S1 1
9HA O S1 1
9HA C1 S1 1
9HA C10 S1 1
9HA C2 S1 1
9HA C24 S1 1
9HA C25 S1 1
9HA C26 S1 1
9HA C27 S1 1
9HA C28 S1 1
9HA C29 S1 1
9HA C3 S1 1
9HA C30 S1 1
9HA C4 S1 1
9HA C5 S1 1
9HA C6 S1 1
9HA C7 S1 1
9HA C8 S1 1
9HA C9 S1 1
9HA N1 S1 1
9HA O1 S1 1
9HA O2 S1 1
9HA N1 F1 1
9HA C9 F1 1
9HA O2 F1 1
9HA C8 F1 1
9HA N2 F1 2
9HA C11 F1 2
9HA O3 F1 2
9HA C10 F1 2
9HA N3 F1 3
9HA C15 F1 3
9HA O5 F1 3
9HA C16 F1 3
9HA N4 F1 4
9HA C14 F1 4
9HA O4 F1 4
9HA C13 F1 4
9HA C25 F2 1
9HA C30 F2 1
9HA C29 F2 1
9HA C28 F2 1
9HA C27 F2 1
9HA C26 F2 1
9HA O2 F3 1
9HA C9 F3 1
9HA C8 F3 1
9HA N F3 1
9HA O3 F3 2
9HA C11 F3 2
9HA C10 F3 2
9HA N1 F3 2
9HA C F4 1
9HA C1 F4 1
9HA C2 F4 1
9HA C3 F4 1
9HA C4 F4 1
9HA C5 F4 1
9HA C9 F5 1
9HA N1 F5 1
9HA C10 F5 1
9HA C24 F5 1
9HA C25 F5 1
9HA C30 F5 1
9HA C29 F5 1
9HA C28 F5 1
9HA C27 F5 1
9HA C26 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9HA
_pdbe_chem_comp_rdkit_properties.exactmw 589.348
_pdbe_chem_comp_rdkit_properties.amw 589.734
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 89
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.633
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 314.262
_pdbe_chem_comp_rdkit_properties.tpsa 169.160
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.641
_pdbe_chem_comp_rdkit_properties.CrippenMR 156.048
_pdbe_chem_comp_rdkit_properties.chi0v 20.094
_pdbe_chem_comp_rdkit_properties.chi1v 10.076
_pdbe_chem_comp_rdkit_properties.chi2v 3.428
_pdbe_chem_comp_rdkit_properties.chi3v 3.428
_pdbe_chem_comp_rdkit_properties.chi4v 1.982
_pdbe_chem_comp_rdkit_properties.chi0n 67.094
_pdbe_chem_comp_rdkit_properties.chi1n 33.312
_pdbe_chem_comp_rdkit_properties.chi2n 3.428
_pdbe_chem_comp_rdkit_properties.chi3n 3.428
_pdbe_chem_comp_rdkit_properties.chi4n 1.982
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.670
_pdbe_chem_comp_rdkit_properties.kappa1 7.167
_pdbe_chem_comp_rdkit_properties.kappa2 16.692
_pdbe_chem_comp_rdkit_properties.kappa3 12.883
_pdbe_chem_comp_rdkit_properties.Phi 2.848
#
_pdbe_chem_comp_external_mappings.comp_id 9HA
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 167713197
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9HA N 2.794 -0.373 -0.465 ETKDGv3 1
9HA C 1.216 4.454 3.827 ETKDGv3 2
9HA O 3.894 1.168 1.075 ETKDGv3 3
9HA C1 1.731 3.297 4.259 ETKDGv3 4
9HA C10 -1.452 -0.700 0.208 ETKDGv3 5
9HA C11 -1.660 0.640 0.872 ETKDGv3 6
9HA C12 -1.633 3.564 1.863 ETKDGv3 7
9HA C13 -2.784 3.523 2.876 ETKDGv3 8
9HA C14 -2.301 3.898 4.243 ETKDGv3 9
9HA C15 -2.804 4.028 -0.333 ETKDGv3 10
9HA C16 -2.754 5.516 -0.143 ETKDGv3 11
9HA C18 2.352 -2.029 -2.281 ETKDGv3 12
9HA C2 2.765 2.603 3.463 ETKDGv3 13
9HA C20 2.671 -2.284 -4.657 ETKDGv3 14
9HA C21 3.619 -1.071 -4.806 ETKDGv3 15
9HA C22 3.471 -3.604 -4.551 ETKDGv3 16
9HA C23 1.808 -2.362 -5.928 ETKDGv3 17
9HA C24 -1.963 -1.863 1.092 ETKDGv3 18
9HA C25 -1.681 -3.282 0.525 ETKDGv3 19
9HA C26 -2.267 -3.533 -0.884 ETKDGv3 20
9HA C27 -3.797 -3.641 -0.860 ETKDGv3 21
9HA C28 -4.251 -4.746 0.100 ETKDGv3 22
9HA C29 -3.698 -4.521 1.512 ETKDGv3 23
9HA C3 3.188 3.128 2.299 ETKDGv3 24
9HA C30 -2.167 -4.380 1.499 ETKDGv3 25
9HA C4 2.590 4.396 1.812 ETKDGv3 26
9HA C5 1.658 5.025 2.539 ETKDGv3 27
9HA C6 4.289 2.464 1.520 ETKDGv3 28
9HA C60 1.848 -3.207 -1.437 ETKDGv3 29
9HA C7 2.986 0.956 0.032 ETKDGv3 30
9HA C8 1.998 -0.649 -1.668 ETKDGv3 31
9HA C9 0.520 -0.510 -1.388 ETKDGv3 32
9HA N1 -0.031 -0.864 -0.108 ETKDGv3 33
9HA N2 -1.823 1.816 0.055 ETKDGv3 34
9HA N3 -2.095 3.119 0.539 ETKDGv3 35
9HA N4 -1.684 2.924 5.084 ETKDGv3 36
9HA O1 2.363 1.926 -0.482 ETKDGv3 37
9HA O2 -0.237 -0.116 -2.317 ETKDGv3 38
9HA O3 -1.655 0.719 2.129 ETKDGv3 39
9HA O4 -2.407 5.089 4.640 ETKDGv3 40
9HA O5 -3.477 3.569 -1.295 ETKDGv3 41
9HA O6 1.759 -2.122 -3.572 ETKDGv3 42
9HA H1 3.333 -1.140 -0.005 ETKDGv3 43
9HA H2 0.471 4.972 4.416 ETKDGv3 44
9HA H3 1.403 2.875 5.200 ETKDGv3 45
9HA H4 -2.057 -0.700 -0.723 ETKDGv3 46
9HA H5 -1.231 4.597 1.805 ETKDGv3 47
9HA H6 -0.778 2.945 2.204 ETKDGv3 48
9HA H7 -3.234 2.510 2.912 ETKDGv3 49
9HA H8 -3.586 4.224 2.564 ETKDGv3 50
9HA H9 -3.221 5.799 0.821 ETKDGv3 51
9HA H10 -1.699 5.862 -0.165 ETKDGv3 52
9HA H11 -3.304 6.030 -0.960 ETKDGv3 53
9HA H12 3.459 -2.100 -2.292 ETKDGv3 54
9HA H13 3.191 1.682 3.840 ETKDGv3 55
9HA H14 3.034 -0.126 -4.819 ETKDGv3 56
9HA H15 4.360 -1.014 -3.983 ETKDGv3 57
9HA H16 4.194 -1.140 -5.755 ETKDGv3 58
9HA H17 4.023 -3.803 -5.495 ETKDGv3 59
9HA H18 4.225 -3.573 -3.738 ETKDGv3 60
9HA H19 2.783 -4.455 -4.361 ETKDGv3 61
9HA H20 2.436 -2.487 -6.837 ETKDGv3 62
9HA H21 1.105 -3.220 -5.865 ETKDGv3 63
9HA H22 1.205 -1.434 -6.043 ETKDGv3 64
9HA H23 -1.473 -1.798 2.088 ETKDGv3 65
9HA H24 -3.052 -1.723 1.255 ETKDGv3 66
9HA H25 -0.578 -3.394 0.454 ETKDGv3 67
9HA H26 -1.953 -2.747 -1.599 ETKDGv3 68
9HA H27 -1.851 -4.487 -1.277 ETKDGv3 69
9HA H28 -4.246 -2.669 -0.563 ETKDGv3 70
9HA H29 -4.160 -3.878 -1.884 ETKDGv3 71
9HA H30 -5.362 -4.763 0.140 ETKDGv3 72
9HA H31 -3.908 -5.733 -0.280 ETKDGv3 73
9HA H32 -3.975 -5.386 2.151 ETKDGv3 74
9HA H33 -4.164 -3.617 1.960 ETKDGv3 75
9HA H34 -1.722 -5.353 1.196 ETKDGv3 76
9HA H35 -1.808 -4.166 2.529 ETKDGv3 77
9HA H36 2.909 4.823 0.869 ETKDGv3 78
9HA H37 1.225 5.952 2.185 ETKDGv3 79
9HA H38 5.179 2.357 2.176 ETKDGv3 80
9HA H39 4.596 3.083 0.648 ETKDGv3 81
9HA H40 2.143 -3.101 -0.373 ETKDGv3 82
9HA H41 2.280 -4.154 -1.822 ETKDGv3 83
9HA H42 0.744 -3.285 -1.506 ETKDGv3 84
9HA H43 2.272 0.113 -2.430 ETKDGv3 85
9HA H44 0.616 -1.143 0.664 ETKDGv3 86
9HA H45 -1.830 1.667 -0.979 ETKDGv3 87
9HA H46 -1.330 3.192 6.029 ETKDGv3 88
9HA H47 -1.563 1.939 4.758 ETKDGv3 89
#