data_9B9
#
_chem_comp.id 9B9
_chem_comp.name
(2S,4S)-N-((3R,5R)-1-(cyclopropanecarbonyl)-5-((4-(((1R,2R)-2-(methoxymethyl)cyclopropyl)buta-1,3-diyn-1-yl)benzamido)methyl)pyrrolidin-3-yl)-4-fluoropyrrolidine-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H35 F N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
(2S,4S)-N-[(3R,5R)-1-cyclopropylcarbonyl-5-[[[4-[4-[(1R,2R)-2-(methoxymethyl)cyclopropyl]buta-1,3-diynyl]phenyl]carbonylamino]methyl]pyrrolidin-3-yl]-4-fluoranyl-pyrrolidine-2-carboxamide
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-11
_chem_comp.pdbx_modified_date 2022-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 534.622
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9B9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q01
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9B9 C16 C1 C 0 1 Y N N N N N 12.168 13.162 27.462 1.606 -1.671 -0.624 C16 9B9 1
9B9 C12 C2 C 0 1 N N N N N N 11.249 12.379 21.428 -8.507 4.734 -0.653 C12 9B9 2
9B9 C11 C3 C 0 1 N N S N N N 9.699 14.153 21.376 -6.888 3.011 -0.613 C11 9B9 3
9B9 C10 C4 C 0 1 N N N N N N 10.456 15.315 22.008 -6.394 1.834 0.188 C10 9B9 4
9B9 C15 C5 C 0 1 N N N N N N 11.111 17.313 24.357 -3.256 -0.178 0.365 C15 9B9 5
9B9 C14 C6 C 0 1 N N N N N N 9.234 13.174 22.447 -6.137 4.304 -0.205 C14 9B9 6
9B9 C13 C7 C 0 1 N N S N N N 10.487 12.420 22.747 -7.130 5.420 -0.601 C13 9B9 7
9B9 C6 C8 C 0 1 N N N N N N 7.184 18.173 28.443 -6.382 -5.597 0.624 C6 9B9 8
9B9 C9 C9 C 0 1 N N R N N N 10.134 17.453 23.209 -4.765 0.074 0.621 C9 9B9 9
9B9 C1 C10 C 0 1 N N N N N N 10.943 13.718 26.786 0.257 -2.232 -0.836 C1 9B9 10
9B9 C2 C11 C 0 1 N N N N N N 9.830 15.719 25.859 -2.128 -2.312 -0.346 C2 9B9 11
9B9 C7 C12 C 0 1 N N N N N N 8.257 19.146 28.704 -6.272 -5.055 -0.803 C7 9B9 12
9B9 C3 C13 C 0 1 N N R N N N 10.224 17.167 25.588 -3.104 -1.687 0.653 C3 9B9 13
9B9 C4 C14 C 0 1 N N N N N N 8.325 18.620 26.214 -4.727 -3.598 0.691 C4 9B9 14
9B9 C5 C15 C 0 1 N N N N N N 8.432 18.138 27.599 -6.112 -4.109 0.389 C5 9B9 15
9B9 O1 O1 O 0 1 N N N N N N 9.947 13.024 26.606 0.091 -3.125 -1.644 O1 9B9 16
9B9 N1 N1 N 0 1 N N N N N N 10.966 15.008 26.433 -0.790 -1.755 -0.135 N1 9B9 17
9B9 N2 N2 N 0 1 N N N N N N 9.091 18.058 25.255 -4.433 -2.296 0.502 N2 9B9 18
9B9 O2 O2 O 0 1 N N N N N N 7.539 19.511 25.920 -3.876 -4.358 1.103 O2 9B9 19
9B9 C8 C16 C 0 1 N N N N N N 8.983 18.298 23.804 -5.392 -1.247 0.111 C8 9B9 20
9B9 N3 N3 N 0 1 N N N N N N 9.682 16.175 22.680 -5.246 1.219 -0.157 N3 9B9 21
9B9 N4 N4 N 0 1 N N N N N N 10.526 13.287 20.526 -8.301 3.319 -0.275 N4 9B9 22
9B9 F1 F1 F 0 1 N N N N N N 11.189 13.156 23.700 -7.129 6.436 0.361 F1 9B9 23
9B9 O3 O3 O 0 1 N N N N N N 11.684 15.391 21.929 -7.029 1.441 1.143 O3 9B9 24
9B9 C17 C17 C 0 1 Y N N N N N 13.431 13.649 27.163 1.798 -0.648 0.310 C17 9B9 25
9B9 C18 C18 C 0 1 Y N N N N N 14.554 13.143 27.799 3.046 -0.132 0.511 C18 9B9 26
9B9 C19 C19 C 0 1 Y N N N N N 14.444 12.134 28.756 4.134 -0.628 -0.217 C19 9B9 27
9B9 C20 C20 C 0 1 N N N N N N 15.609 11.649 29.450 5.443 -0.088 -0.006 C20 9B9 28
9B9 C21 C21 C 0 1 N N N N N N 16.550 11.362 30.162 6.516 0.355 0.167 C21 9B9 29
9B9 C22 C22 C 0 1 N N N N N N 17.538 11.211 31.120 7.776 0.874 0.369 C22 9B9 30
9B9 C23 C23 C 0 1 N N N N N N 18.295 11.044 32.054 8.849 1.317 0.542 C23 9B9 31
9B9 C24 C24 C 0 1 N N R N N N 19.184 10.709 33.153 10.195 1.872 0.759 C24 9B9 32
9B9 C25 C25 C 0 1 N N N N N N 19.184 11.537 34.402 10.813 2.690 -0.377 C25 9B9 33
9B9 C26 C26 C 0 1 N N R N N N 20.334 11.620 33.447 11.342 1.287 -0.068 C26 9B9 34
9B9 C27 C27 C 0 1 N N N N N N 21.656 11.030 33.835 12.713 1.181 0.602 C27 9B9 35
9B9 O4 O4 O 0 1 N N N N N N 22.487 10.864 32.688 13.621 0.511 -0.275 O4 9B9 36
9B9 C28 C28 C 0 1 N N N N N N 23.393 9.786 32.854 14.938 0.359 0.258 C28 9B9 37
9B9 C29 C29 C 0 1 Y N N N N N 13.166 11.656 29.062 3.941 -1.652 -1.151 C29 9B9 38
9B9 C30 C30 C 0 1 Y N N N N N 12.048 12.160 28.417 2.692 -2.167 -1.352 C30 9B9 39
9B9 H1 H1 H 0 1 N N N N N N 11.256 11.357 21.020 -9.187 5.211 0.053 H1 9B9 40
9B9 H2 H2 H 0 1 N N N N N N 12.284 12.724 21.571 -8.916 4.796 -1.661 H2 9B9 41
9B9 H3 H3 H 0 1 N N N N N N 8.832 14.533 20.815 -6.777 2.823 -1.680 H3 9B9 42
9B9 H4 H4 H 0 1 N N N N N N 11.744 16.423 24.224 -2.998 0.045 -0.670 H4 9B9 43
9B9 H5 H5 H 0 1 N N N N N N 11.747 18.206 24.439 -2.643 0.409 1.049 H5 9B9 44
9B9 H6 H6 H 0 1 N N N N N N 8.863 13.703 23.337 -5.949 4.318 0.869 H6 9B9 45
9B9 H7 H7 H 0 1 N N N N N N 8.448 12.506 22.064 -5.205 4.401 -0.762 H7 9B9 46
9B9 H8 H8 H 0 1 N N N N N N 10.258 11.400 23.090 -6.873 5.826 -1.580 H8 9B9 47
9B9 H9 H9 H 0 1 N N N N N N 6.234 18.510 28.003 -7.373 -5.878 0.980 H9 9B9 48
9B9 H10 H10 H 0 1 N N N N N N 6.988 17.367 29.165 -5.558 -6.206 0.997 H10 9B9 49
9B9 H11 H11 H 0 1 N N N N N N 10.612 18.035 22.407 -4.963 0.216 1.684 H11 9B9 50
9B9 H12 H12 H 0 1 N N N N N N 8.987 15.694 26.565 -2.100 -3.391 -0.199 H12 9B9 51
9B9 H13 H13 H 0 1 N N N N N N 9.533 15.237 24.916 -2.457 -2.092 -1.361 H13 9B9 52
9B9 H14 H14 H 0 1 N N N N N N 8.860 19.064 29.621 -5.375 -5.308 -1.369 H14 9B9 53
9B9 H15 H15 H 0 1 N N N N N N 8.106 20.207 28.458 -7.190 -4.981 -1.385 H15 9B9 54
9B9 H16 H16 H 0 1 N N N N N N 10.759 17.562 26.464 -2.739 -1.835 1.670 H16 9B9 55
9B9 H17 H17 H 0 1 N N N N N N 9.133 17.313 27.792 -6.925 -3.412 0.591 H17 9B9 56
9B9 H18 H18 H 0 1 N N N N N N 11.816 15.517 26.572 -0.657 -1.042 0.510 H18 9B9 57
9B9 H19 H19 H 0 1 N N N N N N 9.118 19.365 23.571 -6.357 -1.418 0.588 H19 9B9 58
9B9 H20 H20 H 0 1 N N N N N N 8.009 17.959 23.421 -5.504 -1.220 -0.974 H20 9B9 59
9B9 H21 H21 H 0 1 N N N N N N 8.726 15.922 22.829 -4.737 1.533 -0.921 H21 9B9 60
9B9 H22 H22 H 0 1 N N N N N N 9.947 12.763 19.901 -8.933 2.714 -0.779 H22 9B9 61
9B9 H24 H24 H 0 1 N N N N N N 13.541 14.431 26.427 0.958 -0.265 0.872 H24 9B9 62
9B9 H25 H25 H 0 1 N N N N N N 15.529 13.536 27.550 3.194 0.659 1.232 H25 9B9 63
9B9 H26 H26 H 0 1 N N N N N N 19.385 9.638 33.302 10.418 2.180 1.781 H26 9B9 64
9B9 H27 H27 H 0 1 N N N N N N 18.489 12.384 34.501 10.224 2.816 -1.285 H27 9B9 65
9B9 H28 H28 H 0 1 N N N N N N 19.316 11.055 35.382 11.442 3.537 -0.103 H28 9B9 66
9B9 H29 H29 H 0 1 N N N N N N 20.383 12.536 32.840 11.100 0.491 -0.772 H29 9B9 67
9B9 H30 H30 H 0 1 N N N N N N 21.490 10.050 34.306 13.090 2.181 0.820 H30 9B9 68
9B9 H31 H31 H 0 1 N N N N N N 22.156 11.701 34.549 12.622 0.617 1.530 H31 9B9 69
9B9 H32 H32 H 0 1 N N N N N N 24.016 9.688 31.953 15.566 -0.159 -0.467 H32 9B9 70
9B9 H33 H33 H 0 1 N N N N N N 24.036 9.979 33.725 15.361 1.341 0.469 H33 9B9 71
9B9 H34 H34 H 0 1 N N N N N N 22.829 8.855 33.013 14.893 -0.223 1.179 H34 9B9 72
9B9 H35 H35 H 0 1 N N N N N N 13.049 10.885 29.809 4.779 -2.036 -1.714 H35 9B9 73
9B9 H36 H36 H 0 1 N N N N N N 11.071 11.769 28.660 2.543 -2.960 -2.069 H36 9B9 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9B9 N4 C11 SING N N 1
9B9 N4 C12 SING N N 2
9B9 C11 C10 SING N N 3
9B9 C11 C14 SING N N 4
9B9 C12 C13 SING N N 5
9B9 O3 C10 DOUB N N 6
9B9 C10 N3 SING N N 7
9B9 C14 C13 SING N N 8
9B9 N3 C9 SING N N 9
9B9 C13 F1 SING N N 10
9B9 C9 C8 SING N N 11
9B9 C9 C15 SING N N 12
9B9 C8 N2 SING N N 13
9B9 C15 C3 SING N N 14
9B9 N2 C3 SING N N 15
9B9 N2 C4 SING N N 16
9B9 C3 C2 SING N N 17
9B9 C2 N1 SING N N 18
9B9 O2 C4 DOUB N N 19
9B9 C4 C5 SING N N 20
9B9 N1 C1 SING N N 21
9B9 O1 C1 DOUB N N 22
9B9 C1 C16 SING N N 23
9B9 C17 C16 DOUB Y N 24
9B9 C17 C18 SING Y N 25
9B9 C16 C30 SING Y N 26
9B9 C5 C6 SING N N 27
9B9 C5 C7 SING N N 28
9B9 C18 C19 DOUB Y N 29
9B9 C30 C29 DOUB Y N 30
9B9 C6 C7 SING N N 31
9B9 C19 C29 SING Y N 32
9B9 C19 C20 SING N N 33
9B9 C20 C21 TRIP N N 34
9B9 C21 C22 SING N N 35
9B9 C22 C23 TRIP N N 36
9B9 C23 C24 SING N N 37
9B9 O4 C28 SING N N 38
9B9 O4 C27 SING N N 39
9B9 C24 C26 SING N N 40
9B9 C24 C25 SING N N 41
9B9 C26 C27 SING N N 42
9B9 C26 C25 SING N N 43
9B9 C12 H1 SING N N 44
9B9 C12 H2 SING N N 45
9B9 C11 H3 SING N N 46
9B9 C15 H4 SING N N 47
9B9 C15 H5 SING N N 48
9B9 C14 H6 SING N N 49
9B9 C14 H7 SING N N 50
9B9 C13 H8 SING N N 51
9B9 C6 H9 SING N N 52
9B9 C6 H10 SING N N 53
9B9 C9 H11 SING N N 54
9B9 C2 H12 SING N N 55
9B9 C2 H13 SING N N 56
9B9 C7 H14 SING N N 57
9B9 C7 H15 SING N N 58
9B9 C3 H16 SING N N 59
9B9 C5 H17 SING N N 60
9B9 N1 H18 SING N N 61
9B9 C8 H19 SING N N 62
9B9 C8 H20 SING N N 63
9B9 N3 H21 SING N N 64
9B9 N4 H22 SING N N 65
9B9 C17 H24 SING N N 66
9B9 C18 H25 SING N N 67
9B9 C24 H26 SING N N 68
9B9 C25 H27 SING N N 69
9B9 C25 H28 SING N N 70
9B9 C26 H29 SING N N 71
9B9 C27 H30 SING N N 72
9B9 C27 H31 SING N N 73
9B9 C28 H32 SING N N 74
9B9 C28 H33 SING N N 75
9B9 C28 H34 SING N N 76
9B9 C29 H35 SING N N 77
9B9 C30 H36 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9B9 InChI InChI 1.06 InChI=1S/C30H35FN4O4/c1-39-18-23-12-22(23)5-3-2-4-19-6-8-20(9-7-19)28(36)33-16-26-14-25(17-35(26)30(38)21-10-11-21)34-29(37)27-13-24(31)15-32-27/h6-9,21-27,32H,10-18H2,1H3,(H,33,36)(H,34,37)/t22-,23+,24+,25-,26-,27+/m1/s1
9B9 InChIKey InChI 1.06 WSHJZKFMSGXGDG-MSXPJASTSA-N
9B9 SMILES_CANONICAL CACTVS 3.385 "COC[C@@H]1C[C@H]1C#CC#Cc2ccc(cc2)C(=O)NC[C@H]3C[C@H](CN3C(=O)C4CC4)NC(=O)[C@@H]5C[C@H](F)CN5"
9B9 SMILES CACTVS 3.385 "COC[CH]1C[CH]1C#CC#Cc2ccc(cc2)C(=O)NC[CH]3C[CH](CN3C(=O)C4CC4)NC(=O)[CH]5C[CH](F)CN5"
9B9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC[C@@H]1C[C@H]1C#CC#Cc2ccc(cc2)C(=O)NC[C@H]3C[C@H](CN3C(=O)C4CC4)NC(=O)[C@@H]5C[C@@H](CN5)F"
9B9 SMILES "OpenEye OEToolkits" 2.0.7 "COCC1CC1C#CC#Cc2ccc(cc2)C(=O)NCC3CC(CN3C(=O)C4CC4)NC(=O)C5CC(CN5)F"
#
_pdbx_chem_comp_identifier.comp_id 9B9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{S},4~{S})-~{N}-[(3~{R},5~{R})-1-cyclopropylcarbonyl-5-[[[4-[4-[(1~{R},2~{R})-2-(methoxymethyl)cyclopropyl]buta-1,3-diynyl]phenyl]carbonylamino]methyl]pyrrolidin-3-yl]-4-fluoranyl-pyrrolidine-2-carboxamide
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 9B9
_pdbx_chem_comp_synonyms.name
(2S,4S)-N-[(3R,5R)-1-cyclopropylcarbonyl-5-[[[4-[4-[(1R,2R)-2-(methoxymethyl)cyclopropyl]buta-1,3-diynyl]phenyl]carbonylamino]methyl]pyrrolidin-3-yl]-4-fluoranyl-pyrrolidine-2-carboxamide
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9B9 'Create component' 2021-11-11 PDBE
9B9 'Modify descriptor' 2022-08-22 RCSB
9B9 'Initial release' 2022-11-02 RCSB
#
_pdbe_chem_comp_synonyms.comp_id 9B9
_pdbe_chem_comp_synonyms.name
'(2S,4S)-N-[(3R,5R)-1-cyclopropylcarbonyl-5-[[[4-[4-[(1R,2R)-2-(methoxymethyl)cyclopropyl]buta-1,3-diynyl]phenyl]carbonylamino]methyl]pyrrolidin-3-yl]-4-fluoranyl-pyrrolidine-2-carboxamide'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9B9 C16 C 6.348 2.455 1
9B9 C12 C 17.559 8.864 2
9B9 C11 C 15.185 8.359 3
9B9 C10 C 13.694 8.516 4
9B9 C15 C 10.316 6.345 5
9B9 C14 C 15.935 7.060 6
9B9 C13 C 17.403 7.372 7
9B9 C6 C 9.304 12.032 8
9B9 C9 C 11.320 7.460 9
9B9 C1 C 6.348 3.955 10
9B9 C2 C 7.647 6.205 11
9B9 C7 C 7.837 12.344 12
9B9 C3 C 8.946 6.955 13
9B9 C4 C 7.988 9.450 14
9B9 C5 C 8.300 10.918 15
9B9 O1 O 5.049 4.705 16
9B9 N1 N 7.647 4.705 17
9B9 N2 N 9.103 8.447 18
9B9 O2 O 6.562 8.987 19
9B9 C8 C 10.570 8.758 20
9B9 N3 N 12.812 7.303 21
9B9 N4 N 16.189 9.474 22
9B9 F1 F 18.517 6.369 23
9B9 O3 O 13.084 9.886 24
9B9 C17 C 5.049 1.705 25
9B9 C18 C 5.049 0.205 26
9B9 C19 C 6.348 -0.545 27
9B9 C20 C 6.348 -2.045 28
9B9 C21 C 6.348 -3.545 29
9B9 C22 C 6.348 -5.045 30
9B9 C23 C 6.348 -6.545 31
9B9 C24 C 6.348 -8.045 32
9B9 C25 C 7.098 -9.344 33
9B9 C26 C 5.598 -9.344 34
9B9 C27 C 4.299 -10.094 35
9B9 O4 O 4.299 -11.594 36
9B9 C28 C 3.000 -12.344 37
9B9 C29 C 7.647 0.205 38
9B9 C30 C 7.647 1.705 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9B9 N4 C11 SINGLE NONE 1
9B9 N4 C12 SINGLE NONE 2
9B9 C11 C10 SINGLE BEGINWEDGE 3
9B9 C11 C14 SINGLE NONE 4
9B9 C12 C13 SINGLE NONE 5
9B9 O3 C10 DOUBLE NONE 6
9B9 C10 N3 SINGLE NONE 7
9B9 C14 C13 SINGLE NONE 8
9B9 C9 N3 SINGLE BEGINDASH 9
9B9 C13 F1 SINGLE BEGINWEDGE 10
9B9 C9 C8 SINGLE NONE 11
9B9 C9 C15 SINGLE NONE 12
9B9 C8 N2 SINGLE NONE 13
9B9 C15 C3 SINGLE NONE 14
9B9 N2 C3 SINGLE NONE 15
9B9 N2 C4 SINGLE NONE 16
9B9 C3 C2 SINGLE BEGINDASH 17
9B9 C2 N1 SINGLE NONE 18
9B9 O2 C4 DOUBLE NONE 19
9B9 C4 C5 SINGLE NONE 20
9B9 N1 C1 SINGLE NONE 21
9B9 O1 C1 DOUBLE NONE 22
9B9 C1 C16 SINGLE NONE 23
9B9 C17 C16 DOUBLE NONE 24
9B9 C17 C18 SINGLE NONE 25
9B9 C16 C30 SINGLE NONE 26
9B9 C5 C6 SINGLE NONE 27
9B9 C5 C7 SINGLE NONE 28
9B9 C18 C19 DOUBLE NONE 29
9B9 C30 C29 DOUBLE NONE 30
9B9 C6 C7 SINGLE NONE 31
9B9 C19 C29 SINGLE NONE 32
9B9 C19 C20 SINGLE NONE 33
9B9 C20 C21 TRIPLE NONE 34
9B9 C21 C22 SINGLE NONE 35
9B9 C22 C23 TRIPLE NONE 36
9B9 C24 C23 SINGLE BEGINDASH 37
9B9 O4 C28 SINGLE NONE 38
9B9 O4 C27 SINGLE NONE 39
9B9 C24 C26 SINGLE NONE 40
9B9 C24 C25 SINGLE NONE 41
9B9 C26 C27 SINGLE BEGINWEDGE 42
9B9 C26 C25 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9B9 MurckoScaffold S1 scaffold 'O=C(NC[C@H]1C[C@@H](NC(=O)[C@@H]2CCCN2)CN1C(=O)C1CC1)c1ccc(C#CC#CC2CC2)cc1' InChI=1S/C28H32N4O3/c33-26(21-11-9-20(10-12-21)5-2-1-4-19-7-8-19)30-17-24-16-23(18-32(24)28(35)22-13-14-22)31-27(34)25-6-3-15-29-25/h9-12,19,22-25,29H,3,6-8,13-18H2,(H,30,33)(H,31,34)/t23-,24-,25+/m1/s1 VFYDAKZWJKNLME-SDHSZQHLSA-N
9B9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9B9 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
9B9 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
9B9 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9B9 Z1650040241 F5 fragment CCC(=O)NC1CCNC1 InChI=1S/C7H14N2O/c1-2-7(10)9-6-3-4-8-5-6/h6,8H,2-5H2,1H3,(H,9,10) JTOGNXBWLDRNON-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9B9 C16 S1 1
9B9 C12 S1 1
9B9 C11 S1 1
9B9 C10 S1 1
9B9 C15 S1 1
9B9 C14 S1 1
9B9 C13 S1 1
9B9 C6 S1 1
9B9 C9 S1 1
9B9 C1 S1 1
9B9 C2 S1 1
9B9 C7 S1 1
9B9 C3 S1 1
9B9 C4 S1 1
9B9 C5 S1 1
9B9 O1 S1 1
9B9 N1 S1 1
9B9 N2 S1 1
9B9 O2 S1 1
9B9 C8 S1 1
9B9 N3 S1 1
9B9 N4 S1 1
9B9 O3 S1 1
9B9 C17 S1 1
9B9 C18 S1 1
9B9 C19 S1 1
9B9 C20 S1 1
9B9 C21 S1 1
9B9 C22 S1 1
9B9 C23 S1 1
9B9 C24 S1 1
9B9 C25 S1 1
9B9 C26 S1 1
9B9 C29 S1 1
9B9 C30 S1 1
9B9 N1 F1 1
9B9 C1 F1 1
9B9 O1 F1 1
9B9 C16 F1 1
9B9 N2 F1 2
9B9 C4 F1 2
9B9 O2 F1 2
9B9 C5 F1 2
9B9 N3 F1 3
9B9 C10 F1 3
9B9 O3 F1 3
9B9 C11 F1 3
9B9 C6 F2 1
9B9 C5 F2 1
9B9 C7 F2 1
9B9 C24 F2 2
9B9 C26 F2 2
9B9 C25 F2 2
9B9 O3 F3 1
9B9 C10 F3 1
9B9 C11 F3 1
9B9 N4 F3 1
9B9 C16 F4 1
9B9 C17 F4 1
9B9 C18 F4 1
9B9 C19 F4 1
9B9 C29 F4 1
9B9 C30 F4 1
9B9 C14 F5 1
9B9 C11 F5 1
9B9 C10 F5 1
9B9 O3 F5 1
9B9 N3 F5 1
9B9 C9 F5 1
9B9 C15 F5 1
9B9 C3 F5 1
9B9 N2 F5 1
9B9 C8 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9B9
_pdbe_chem_comp_rdkit_properties.exactmw 534.264
_pdbe_chem_comp_rdkit_properties.amw 534.632
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.567
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 277.686
_pdbe_chem_comp_rdkit_properties.tpsa 99.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.140
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.447
_pdbe_chem_comp_rdkit_properties.chi0v 18.800
_pdbe_chem_comp_rdkit_properties.chi1v 10.222
_pdbe_chem_comp_rdkit_properties.chi2v 4.385
_pdbe_chem_comp_rdkit_properties.chi3v 4.385
_pdbe_chem_comp_rdkit_properties.chi4v 2.556
_pdbe_chem_comp_rdkit_properties.chi0n 53.800
_pdbe_chem_comp_rdkit_properties.chi1n 27.564
_pdbe_chem_comp_rdkit_properties.chi2n 4.385
_pdbe_chem_comp_rdkit_properties.chi3n 4.385
_pdbe_chem_comp_rdkit_properties.chi4n 2.556
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.400
_pdbe_chem_comp_rdkit_properties.kappa1 7.658
_pdbe_chem_comp_rdkit_properties.kappa2 12.193
_pdbe_chem_comp_rdkit_properties.kappa3 7.173
_pdbe_chem_comp_rdkit_properties.Phi 2.394
#
_pdbe_chem_comp_external_mappings.comp_id 9B9
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 165416269
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9B9 C16 0.631 0.333 -1.176 ETKDGv3 1
9B9 C12 -6.933 3.678 3.035 ETKDGv3 2
9B9 C11 -6.208 2.335 1.278 ETKDGv3 3
9B9 C10 -5.724 0.952 0.910 ETKDGv3 4
9B9 C15 -3.897 -0.852 -0.936 ETKDGv3 5
9B9 C14 -5.059 3.296 1.543 ETKDGv3 6
9B9 C13 -5.644 4.309 2.509 ETKDGv3 7
9B9 C6 -3.953 -5.057 -3.099 ETKDGv3 8
9B9 C9 -5.424 -0.866 -0.833 ETKDGv3 9
9B9 C1 -0.664 0.232 -1.891 ETKDGv3 10
9B9 C2 -2.456 -1.201 -3.005 ETKDGv3 11
9B9 C7 -4.699 -5.367 -4.383 ETKDGv3 12
9B9 C3 -3.550 -1.794 -2.098 ETKDGv3 13
9B9 C4 -4.991 -2.882 -3.934 ETKDGv3 14
9B9 C5 -4.033 -4.010 -4.199 ETKDGv3 15
9B9 O1 -1.305 1.285 -2.162 ETKDGv3 16
9B9 N1 -1.204 -1.048 -2.262 ETKDGv3 17
9B9 N2 -4.800 -1.976 -2.832 ETKDGv3 18
9B9 O2 -5.977 -2.724 -4.704 ETKDGv3 19
9B9 C8 -5.913 -1.267 -2.224 ETKDGv3 20
9B9 N3 -5.950 0.437 -0.411 ETKDGv3 21
9B9 N4 -7.044 2.328 2.480 ETKDGv3 22
9B9 F1 -4.760 4.561 3.546 ETKDGv3 23
9B9 O3 -5.097 0.261 1.759 ETKDGv3 24
9B9 C17 0.904 1.406 -0.408 ETKDGv3 25
9B9 C18 2.190 1.508 0.313 ETKDGv3 26
9B9 C19 3.103 0.533 0.200 ETKDGv3 27
9B9 C20 4.357 0.626 0.901 ETKDGv3 28
9B9 C21 5.407 0.703 1.487 ETKDGv3 29
9B9 C22 6.638 0.792 2.173 ETKDGv3 30
9B9 C23 7.689 0.870 2.757 ETKDGv3 31
9B9 C24 8.969 0.963 3.470 ETKDGv3 32
9B9 C25 9.776 2.208 3.123 ETKDGv3 33
9B9 C26 10.191 0.851 2.568 ETKDGv3 34
9B9 C27 11.432 0.230 3.225 ETKDGv3 35
9B9 O4 12.606 0.782 2.661 ETKDGv3 36
9B9 C28 13.040 0.001 1.569 ETKDGv3 37
9B9 C29 2.823 -0.639 -0.655 ETKDGv3 38
9B9 C30 1.658 -0.735 -1.308 ETKDGv3 39
9B9 H1 -6.942 3.648 4.148 ETKDGv3 40
9B9 H2 -7.808 4.276 2.702 ETKDGv3 41
9B9 H3 -6.818 2.743 0.441 ETKDGv3 42
9B9 H4 -3.555 0.186 -1.143 ETKDGv3 43
9B9 H5 -3.429 -1.198 0.011 ETKDGv3 44
9B9 H6 -4.712 3.780 0.604 ETKDGv3 45
9B9 H7 -4.203 2.769 2.022 ETKDGv3 46
9B9 H8 -5.870 5.262 1.981 ETKDGv3 47
9B9 H9 -4.617 -4.895 -2.221 ETKDGv3 48
9B9 H10 -2.965 -5.557 -3.015 ETKDGv3 49
9B9 H11 -5.736 -1.650 -0.106 ETKDGv3 50
9B9 H12 -2.795 -0.232 -3.433 ETKDGv3 51
9B9 H13 -2.266 -1.879 -3.860 ETKDGv3 52
9B9 H14 -4.155 -6.064 -5.056 ETKDGv3 53
9B9 H15 -5.802 -5.404 -4.255 ETKDGv3 54
9B9 H16 -3.215 -2.772 -1.690 ETKDGv3 55
9B9 H17 -3.124 -3.852 -4.816 ETKDGv3 56
9B9 H18 -0.752 -1.919 -1.908 ETKDGv3 57
9B9 H19 -6.163 -0.386 -2.854 ETKDGv3 58
9B9 H20 -6.802 -1.930 -2.139 ETKDGv3 59
9B9 H21 -6.526 1.003 -1.074 ETKDGv3 60
9B9 H22 -6.634 1.671 3.186 ETKDGv3 61
9B9 H24 0.181 2.205 -0.289 ETKDGv3 62
9B9 H25 2.380 2.376 0.933 ETKDGv3 63
9B9 H26 9.052 0.607 4.519 ETKDGv3 64
9B9 H27 9.325 2.885 2.365 ETKDGv3 65
9B9 H28 10.396 2.596 3.960 ETKDGv3 66
9B9 H29 10.005 0.707 1.481 ETKDGv3 67
9B9 H30 11.450 0.443 4.316 ETKDGv3 68
9B9 H31 11.378 -0.880 3.136 ETKDGv3 69
9B9 H32 13.906 0.507 1.094 ETKDGv3 70
9B9 H33 12.246 -0.102 0.797 ETKDGv3 71
9B9 H34 13.381 -1.001 1.911 ETKDGv3 72
9B9 H35 3.567 -1.420 -0.765 ETKDGv3 73
9B9 H36 1.491 -1.587 -1.952 ETKDGv3 74
#