data_98B
#
_chem_comp.id 98B
_chem_comp.name (1S)-1-phenylethanamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H11 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-04
_chem_comp.pdbx_modified_date 2016-04-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 121.180
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 98B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YJF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
98B N N1 N 0 1 N N N N N N 24.215 50.456 8.158 2.286 -0.774 0.888 N 98B 1
98B C C1 C 0 1 N N S N N N 23.085 50.124 9.008 1.678 0.392 0.233 C 98B 2
98B C7 C2 C 0 1 N N N N N N 23.100 48.638 9.392 2.283 0.566 -1.161 C7 98B 3
98B C1 C3 C 0 1 Y N N N N N 22.996 51.030 10.194 0.191 0.181 0.113 C1 98B 4
98B C2 C4 C 0 1 Y N N N N N 23.317 52.379 10.054 -0.307 -1.066 -0.215 C2 98B 5
98B C3 C5 C 0 1 Y N N N N N 23.196 53.239 11.153 -1.671 -1.259 -0.325 C3 98B 6
98B C4 C6 C 0 1 Y N N N N N 22.742 52.768 12.390 -2.538 -0.205 -0.106 C4 98B 7
98B C5 C7 C 0 1 Y N N N N N 22.414 51.430 12.524 -2.041 1.042 0.223 C5 98B 8
98B C6 C8 C 0 1 Y N N N N N 22.541 50.569 11.431 -0.676 1.234 0.337 C6 98B 9
98B H1 H1 H 0 1 N N N N N N 24.182 51.427 7.923 1.951 -0.873 1.835 H1 98B 10
98B H2 H2 H 0 1 N N N N N N 25.067 50.260 8.644 2.121 -1.615 0.356 H2 98B 11
98B H4 H4 H 0 1 N N N N N N 22.171 50.283 8.416 1.872 1.285 0.828 H4 98B 12
98B H5 H5 H 0 1 N N N N N N 22.235 48.416 10.034 2.089 -0.327 -1.755 H5 98B 13
98B H6 H6 H 0 1 N N N N N N 23.048 48.024 8.481 1.832 1.431 -1.647 H6 98B 14
98B H7 H7 H 0 1 N N N N N N 24.028 48.409 9.936 3.359 0.718 -1.074 H7 98B 15
98B H8 H8 H 0 1 N N N N N N 23.658 52.760 9.102 0.371 -1.890 -0.385 H8 98B 16
98B H9 H9 H 0 1 N N N N N N 23.457 54.281 11.044 -2.059 -2.233 -0.582 H9 98B 17
98B H10 H10 H 0 1 N N N N N N 22.649 53.440 13.230 -3.604 -0.355 -0.193 H10 98B 18
98B H11 H11 H 0 1 N N N N N N 22.060 51.052 13.472 -2.718 1.866 0.393 H11 98B 19
98B H12 H12 H 0 1 N N N N N N 22.282 49.527 11.545 -0.288 2.208 0.598 H12 98B 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
98B N C SING N N 1
98B C C7 SING N N 2
98B C C1 SING N N 3
98B C2 C1 DOUB Y N 4
98B C2 C3 SING Y N 5
98B C1 C6 SING Y N 6
98B C3 C4 DOUB Y N 7
98B C6 C5 DOUB Y N 8
98B C4 C5 SING Y N 9
98B N H1 SING N N 10
98B N H2 SING N N 11
98B C H4 SING N N 12
98B C7 H5 SING N N 13
98B C7 H6 SING N N 14
98B C7 H7 SING N N 15
98B C2 H8 SING N N 16
98B C3 H9 SING N N 17
98B C4 H10 SING N N 18
98B C5 H11 SING N N 19
98B C6 H12 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
98B SMILES ACDLabs 12.01 NC(C)c1ccccc1
98B InChI InChI 1.03 InChI=1S/C8H11N/c1-7(9)8-5-3-2-4-6-8/h2-7H,9H2,1H3/t7-/m0/s1
98B InChIKey InChI 1.03 RQEUFEKYXDPUSK-ZETCQYMHSA-N
98B SMILES_CANONICAL CACTVS 3.385 C[C@H](N)c1ccccc1
98B SMILES CACTVS 3.385 C[CH](N)c1ccccc1
98B SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@@H](c1ccccc1)N
98B SMILES "OpenEye OEToolkits" 1.9.2 CC(c1ccccc1)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
98B "SYSTEMATIC NAME" ACDLabs 12.01 (1S)-1-phenylethanamine
98B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (1S)-1-phenylethanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
98B 'Create component' 2015-03-04 RCSB
98B 'Initial release' 2016-04-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
98B N N 5.598 2.160 1
98B C C 4.299 1.410 2
98B C7 C 3.000 2.160 3
98B C1 C 4.299 -0.090 4
98B C2 C 3.000 -0.840 5
98B C3 C 3.000 -2.340 6
98B C4 C 4.299 -3.090 7
98B C5 C 5.598 -2.340 8
98B C6 C 5.598 -0.840 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
98B N C SINGLE NONE 1
98B C C7 SINGLE BEGINDASH 2
98B C C1 SINGLE NONE 3
98B C2 C1 DOUBLE NONE 4
98B C2 C3 SINGLE NONE 5
98B C1 C6 SINGLE NONE 6
98B C3 C4 DOUBLE NONE 7
98B C6 C5 DOUBLE NONE 8
98B C4 C5 SINGLE NONE 9
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
98B MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
98B phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
98B C1 S1 1
98B C2 S1 1
98B C3 S1 1
98B C4 S1 1
98B C5 S1 1
98B C6 S1 1
98B C1 F1 1
98B C2 F1 1
98B C3 F1 1
98B C4 F1 1
98B C5 F1 1
98B C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 98B
_pdbe_chem_comp_rdkit_properties.exactmw 121.089
_pdbe_chem_comp_rdkit_properties.amw 121.183
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 71.072
_pdbe_chem_comp_rdkit_properties.tpsa 26.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.652
_pdbe_chem_comp_rdkit_properties.CrippenMR 38.778
_pdbe_chem_comp_rdkit_properties.chi0v 4.447
_pdbe_chem_comp_rdkit_properties.chi1v 2.224
_pdbe_chem_comp_rdkit_properties.chi2v 0.737
_pdbe_chem_comp_rdkit_properties.chi3v 0.737
_pdbe_chem_comp_rdkit_properties.chi4v 0.368
_pdbe_chem_comp_rdkit_properties.chi0n 15.447
_pdbe_chem_comp_rdkit_properties.chi1n 7.618
_pdbe_chem_comp_rdkit_properties.chi2n 0.737
_pdbe_chem_comp_rdkit_properties.chi3n 0.737
_pdbe_chem_comp_rdkit_properties.chi4n 0.368
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.820
_pdbe_chem_comp_rdkit_properties.kappa1 1.146
_pdbe_chem_comp_rdkit_properties.kappa2 2.646
_pdbe_chem_comp_rdkit_properties.kappa3 1.541
_pdbe_chem_comp_rdkit_properties.Phi 0.337
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
98B UniChem ChEBI 35321
98B UniChem ZINC ZINC000006030374
98B UniChem eMolecules 479050
98B UniChem fdasrs 05780F90V3
98B UniChem SureChEMBL SCHEMBL42904
98B UniChem ACTor 98-84-0
98B UniChem BindingDb 50028638
98B UniChem MetaboLights MTBLC35321
98B UniChem BRENDA 11583
98B UniChem BRENDA 172527
98B UniChem BRENDA 214386
98B UniChem BRENDA 221035
98B UniChem BRENDA 221320
98B UniChem BRENDA 237377
98B UniChem BRENDA 253332
98B UniChem BRENDA 253413
98B UniChem BRENDA 31993
98B UniChem ChemicalBook CB6386515
98B UniChem 'Probes And Drugs' PD124030
98B UniChem CCDC FOCXAX
98B UniChem Nikkaji J45.983F
98B UniChem 'PubChem TPHARMA' 15486536
98B UniChem PubChem 75818
98B UniChem Mcule MCULE-6531880178
98B UniChem Mcule MCULE-6602875097
98B UniChem ACTor 137577-63-0
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
98B N -1.913 1.212 0.895 ETKDGv3 1
98B C -1.461 -0.088 0.398 ETKDGv3 2
98B C7 -2.109 -0.387 -0.957 ETKDGv3 3
98B C1 0.047 -0.100 0.263 ETKDGv3 4
98B C2 0.768 -1.143 0.716 ETKDGv3 5
98B C3 2.238 -1.161 0.557 ETKDGv3 6
98B C4 2.860 -0.144 -0.050 ETKDGv3 7
98B C5 2.078 0.998 -0.565 ETKDGv3 8
98B C6 0.747 1.020 -0.420 ETKDGv3 9
98B H1 -1.491 1.366 1.841 ETKDGv3 10
98B H2 -2.948 1.168 1.045 ETKDGv3 11
98B H4 -1.788 -0.876 1.116 ETKDGv3 12
98B H5 -1.856 0.403 -1.696 ETKDGv3 13
98B H6 -1.756 -1.368 -1.341 ETKDGv3 14
98B H7 -3.213 -0.433 -0.848 ETKDGv3 15
98B H8 0.286 -1.983 1.201 ETKDGv3 16
98B H9 2.809 -2.000 0.932 ETKDGv3 17
98B H10 3.935 -0.157 -0.168 ETKDGv3 18
98B H11 2.584 1.815 -1.062 ETKDGv3 19
98B H12 0.183 1.860 -0.806 ETKDGv3 20
#