data_8ZL
#
_chem_comp.id 8ZL
_chem_comp.name
(5S,8R)-N,N-dimethyl-8-[[(2S)-1-[4-(methylamino)-4-oxidanylidene-butanoyl]pyrrolidin-2-yl]carbonylamino]-7,11-bis(oxidanylidene)-10-oxa-3-thia-6-azabicyclo[10.4.0]hexadeca-1(12),13,15-triene-5-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H35 N5 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-10
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 561.650
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8ZL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q6Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8ZL N1 N1 N 0 1 N N N N N N -2.267 1.455 -23.859 3.685 1.892 0.336 N1 8ZL 1
8ZL C7 C1 C 0 1 N N N N N N -1.337 -0.451 -24.857 2.496 3.840 1.162 C7 8ZL 2
8ZL C8 C2 C 0 1 N N S N N N -2.153 0.802 -25.173 2.529 2.297 1.150 C8 8ZL 3
8ZL N2 N2 N 0 1 N N N N N N -3.368 1.050 -27.247 0.071 2.027 1.115 N2 8ZL 4
8ZL C9 C3 C 0 1 N N N N N N -3.388 0.510 -26.019 1.260 1.762 0.539 C9 8ZL 5
8ZL O1 O1 O 0 1 N N N N N N -4.368 2.291 -24.013 3.442 -0.301 0.568 O1 8ZL 6
8ZL C1 C4 C 0 1 N N N N N N -3.669 5.646 -23.300 6.717 -1.429 -1.716 C1 8ZL 7
8ZL O5 O2 O 0 1 N N N N N N -6.744 1.577 -28.480 -2.148 -0.107 1.946 O5 8ZL 8
8ZL C5 C5 C 0 1 N N N N N N -1.058 1.188 -23.054 4.355 3.103 -0.170 C5 8ZL 9
8ZL C6 C6 C 0 1 N N N N N N -0.332 0.068 -23.838 3.961 4.221 0.828 C6 8ZL 10
8ZL N3 N3 N 0 1 N N N N N N -5.746 2.133 -26.534 -0.762 -0.930 0.388 N3 8ZL 11
8ZL C4 C7 C 0 1 N N N N N N -3.257 2.344 -23.512 4.071 0.623 0.098 C4 8ZL 12
8ZL O4 O3 O 0 1 N N N N N N -2.984 2.906 -31.615 -2.688 0.139 -0.372 O4 8ZL 13
8ZL C3 C8 C 0 1 N N N N N N -3.017 3.326 -22.384 5.285 0.352 -0.753 C3 8ZL 14
8ZL O3 O4 O 0 1 N N N N N N -3.987 2.853 -29.600 -3.447 2.189 -0.007 O3 8ZL 15
8ZL C2 C9 C 0 1 N N N N N N -2.543 4.687 -22.937 5.503 -1.158 -0.865 C2 8ZL 16
8ZL N4 N4 N 0 1 N N N N N N -7.349 1.422 -24.173 -0.649 -1.765 3.334 N4 8ZL 17
8ZL O6 O5 O 0 1 N N N N N N -7.502 3.634 -23.877 -2.667 -2.380 2.650 O6 8ZL 18
8ZL C23 C10 C 0 1 N N N N N N -7.224 2.699 -24.609 -1.511 -2.144 2.370 C23 8ZL 19
8ZL C25 C11 C 0 1 N N N N N N -7.298 1.207 -22.732 -1.108 -1.639 4.720 C25 8ZL 20
8ZL C24 C12 C 0 1 N N N N N N -7.404 0.172 -24.924 0.748 -1.480 2.997 C24 8ZL 21
8ZL C21 C13 C 0 1 N N S N N N -6.828 2.986 -26.069 -1.038 -2.275 0.945 C21 8ZL 22
8ZL C20 C14 C 0 1 N N N N N N -6.401 4.454 -26.180 -2.128 -2.939 0.102 C20 8ZL 23
8ZL S S1 S 0 1 N N N N N N -6.185 5.087 -27.863 -3.522 -1.796 -0.098 S 8ZL 24
8ZL C19 C15 C 0 1 N N N N N N -4.389 4.977 -28.115 -3.628 -1.594 -1.898 C19 8ZL 25
8ZL C18 C16 C 0 1 Y N N N N N -3.931 5.667 -29.376 -4.647 -0.533 -2.226 C18 8ZL 26
8ZL C17 C17 C 0 1 Y N N N N N -3.968 7.065 -29.394 -5.640 -0.790 -3.148 C17 8ZL 27
8ZL C16 C18 C 0 1 Y N N N N N -3.701 7.770 -30.559 -6.577 0.183 -3.449 C16 8ZL 28
8ZL C15 C19 C 0 1 Y N N N N N -3.357 7.094 -31.717 -6.526 1.417 -2.826 C15 8ZL 29
8ZL C14 C20 C 0 1 Y N N N N N -3.276 5.706 -31.722 -5.537 1.689 -1.904 C14 8ZL 30
8ZL C13 C21 C 0 1 Y N N N N N -3.565 4.975 -30.561 -4.585 0.713 -1.599 C13 8ZL 31
8ZL C12 C22 C 0 1 N N N N N N -3.471 3.481 -30.667 -3.514 0.994 -0.622 C12 8ZL 32
8ZL C11 C23 C 0 1 N N N N N N -4.004 1.405 -29.595 -2.340 2.397 0.929 C11 8ZL 33
8ZL C22 C24 C 0 1 N N N N N N -5.756 1.569 -27.748 -1.402 0.103 1.013 C22 8ZL 34
8ZL C10 C25 C 0 1 N N R N N N -4.447 0.928 -28.218 -1.163 1.507 0.521 C10 8ZL 35
8ZL O2 O6 O 0 1 N N N N N N -4.326 -0.149 -25.570 1.308 1.093 -0.472 O2 8ZL 36
8ZL O O7 O 0 1 N N N N N N -3.497 6.510 -24.156 7.346 -0.505 -2.187 O 8ZL 37
8ZL N N5 N 0 1 N N N N N N -4.808 5.547 -22.617 7.103 -2.698 -1.955 N 8ZL 38
8ZL C C26 C 0 1 N N N N N N -5.930 6.453 -22.820 8.284 -2.961 -2.782 C 8ZL 39
8ZL H1 H1 H 0 1 N N N N N N -1.970 -1.241 -24.426 1.816 4.218 0.399 H1 8ZL 40
8ZL H2 H2 H 0 1 N N N N N N -0.832 -0.835 -25.755 2.215 4.214 2.146 H2 8ZL 41
8ZL H3 H3 H 0 1 N N N N N N -1.504 1.441 -25.790 2.641 1.920 2.166 H3 8ZL 42
8ZL H4 H4 H 0 1 N N N N N N -2.558 1.572 -27.514 0.032 2.562 1.923 H4 8ZL 43
8ZL H5 H5 H 0 1 N N N N N N -0.429 2.087 -22.982 5.436 2.964 -0.177 H5 8ZL 44
8ZL H6 H6 H 0 1 N N N N N N -1.328 0.847 -22.043 3.997 3.344 -1.172 H6 8ZL 45
8ZL H7 H7 H 0 1 N N N N N N -0.027 -0.740 -23.156 4.012 5.201 0.355 H7 8ZL 46
8ZL H8 H8 H 0 1 N N N N N N 0.555 0.472 -24.348 4.587 4.186 1.720 H8 8ZL 47
8ZL H9 H9 H 0 1 N N N N N N -4.970 1.962 -25.927 -0.166 -0.793 -0.364 H9 8ZL 48
8ZL H10 H10 H 0 1 N N N N N N -3.953 3.470 -21.825 5.133 0.772 -1.747 H10 8ZL 49
8ZL H11 H11 H 0 1 N N N N N N -2.247 2.922 -21.711 6.161 0.812 -0.294 H11 8ZL 50
8ZL H12 H12 H 0 1 N N N N N N -1.945 4.501 -23.841 4.628 -1.618 -1.324 H12 8ZL 51
8ZL H13 H13 H 0 1 N N N N N N -1.914 5.168 -22.174 5.655 -1.578 0.129 H13 8ZL 52
8ZL H14 H14 H 0 1 N N N N N N -7.258 2.178 -22.217 -0.980 -2.591 5.234 H14 8ZL 53
8ZL H15 H15 H 0 1 N N N N N N -8.196 0.659 -22.411 -0.524 -0.871 5.227 H15 8ZL 54
8ZL H16 H16 H 0 1 N N N N N N -6.402 0.621 -22.480 -2.162 -1.359 4.729 H16 8ZL 55
8ZL H17 H17 H 0 1 N N N N N N -7.510 -0.671 -24.226 1.337 -2.394 3.084 H17 8ZL 56
8ZL H18 H18 H 0 1 N N N N N N -8.266 0.193 -25.607 0.806 -1.107 1.975 H18 8ZL 57
8ZL H19 H19 H 0 1 N N N N N N -6.478 0.053 -25.505 1.141 -0.729 3.682 H19 8ZL 58
8ZL H20 H20 H 0 1 N N N N N N -7.713 2.833 -26.704 -0.130 -2.877 0.915 H20 8ZL 59
8ZL H21 H21 H 0 1 N N N N N N -5.443 4.568 -25.651 -1.724 -3.194 -0.878 H21 8ZL 60
8ZL H22 H22 H 0 1 N N N N N N -7.168 5.067 -25.685 -2.471 -3.846 0.600 H22 8ZL 61
8ZL H23 H23 H 0 1 N N N N N N -4.107 3.915 -28.173 -2.655 -1.296 -2.288 H23 8ZL 62
8ZL H24 H24 H 0 1 N N N N N N -3.885 5.444 -27.256 -3.928 -2.538 -2.352 H24 8ZL 63
8ZL H25 H25 H 0 1 N N N N N N -4.208 7.603 -28.489 -5.687 -1.752 -3.637 H25 8ZL 64
8ZL H26 H26 H 0 1 N N N N N N -3.762 8.848 -30.562 -7.352 -0.023 -4.173 H26 8ZL 65
8ZL H27 H27 H 0 1 N N N N N N -3.151 7.648 -32.621 -7.263 2.170 -3.063 H27 8ZL 66
8ZL H28 H28 H 0 1 N N N N N N -2.989 5.188 -32.625 -5.498 2.653 -1.419 H28 8ZL 67
8ZL H29 H29 H 0 1 N N N N N N -4.708 1.040 -30.358 -2.033 3.442 0.902 H29 8ZL 68
8ZL H30 H30 H 0 1 N N N N N N -2.996 1.022 -29.813 -2.663 2.138 1.937 H30 8ZL 69
8ZL H31 H31 H 0 1 N N N N N N -4.658 -0.146 -28.323 -1.071 1.503 -0.565 H31 8ZL 70
8ZL H32 H32 H 0 1 N N N N N N -4.897 4.820 -21.936 6.600 -3.437 -1.579 H32 8ZL 71
8ZL H33 H33 H 0 1 N N N N N N -6.753 6.175 -22.146 8.439 -4.037 -2.862 H33 8ZL 72
8ZL H34 H34 H 0 1 N N N N N N -5.612 7.484 -22.604 8.131 -2.541 -3.776 H34 8ZL 73
8ZL H35 H35 H 0 1 N N N N N N -6.272 6.385 -23.863 9.159 -2.501 -2.323 H35 8ZL 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8ZL C14 C15 DOUB Y N 1
8ZL C14 C13 SING Y N 2
8ZL C15 C16 SING Y N 3
8ZL O4 C12 DOUB N N 4
8ZL C12 C13 SING N N 5
8ZL C12 O3 SING N N 6
8ZL C13 C18 DOUB Y N 7
8ZL C16 C17 DOUB Y N 8
8ZL O3 C11 SING N N 9
8ZL C11 C10 SING N N 10
8ZL C17 C18 SING Y N 11
8ZL C18 C19 SING N N 12
8ZL O5 C22 DOUB N N 13
8ZL C10 C22 SING N N 14
8ZL C10 N2 SING N N 15
8ZL C19 S SING N N 16
8ZL S C20 SING N N 17
8ZL C22 N3 SING N N 18
8ZL N2 C9 SING N N 19
8ZL N3 C21 SING N N 20
8ZL C20 C21 SING N N 21
8ZL C21 C23 SING N N 22
8ZL C9 O2 DOUB N N 23
8ZL C9 C8 SING N N 24
8ZL C8 C7 SING N N 25
8ZL C8 N1 SING N N 26
8ZL C24 N4 SING N N 27
8ZL C7 C6 SING N N 28
8ZL C23 N4 SING N N 29
8ZL C23 O6 DOUB N N 30
8ZL N4 C25 SING N N 31
8ZL O C1 DOUB N N 32
8ZL O1 C4 DOUB N N 33
8ZL N1 C4 SING N N 34
8ZL N1 C5 SING N N 35
8ZL C6 C5 SING N N 36
8ZL C4 C3 SING N N 37
8ZL C1 C2 SING N N 38
8ZL C1 N SING N N 39
8ZL C2 C3 SING N N 40
8ZL C N SING N N 41
8ZL C7 H1 SING N N 42
8ZL C7 H2 SING N N 43
8ZL C8 H3 SING N N 44
8ZL N2 H4 SING N N 45
8ZL C5 H5 SING N N 46
8ZL C5 H6 SING N N 47
8ZL C6 H7 SING N N 48
8ZL C6 H8 SING N N 49
8ZL N3 H9 SING N N 50
8ZL C3 H10 SING N N 51
8ZL C3 H11 SING N N 52
8ZL C2 H12 SING N N 53
8ZL C2 H13 SING N N 54
8ZL C25 H14 SING N N 55
8ZL C25 H15 SING N N 56
8ZL C25 H16 SING N N 57
8ZL C24 H17 SING N N 58
8ZL C24 H18 SING N N 59
8ZL C24 H19 SING N N 60
8ZL C21 H20 SING N N 61
8ZL C20 H21 SING N N 62
8ZL C20 H22 SING N N 63
8ZL C19 H23 SING N N 64
8ZL C19 H24 SING N N 65
8ZL C17 H25 SING N N 66
8ZL C16 H26 SING N N 67
8ZL C15 H27 SING N N 68
8ZL C14 H28 SING N N 69
8ZL C11 H29 SING N N 70
8ZL C11 H30 SING N N 71
8ZL C10 H31 SING N N 72
8ZL N H32 SING N N 73
8ZL C H33 SING N N 74
8ZL C H34 SING N N 75
8ZL C H35 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8ZL InChI InChI 1.06 InChI=1S/C26H35N5O7S/c1-27-21(32)10-11-22(33)31-12-6-9-20(31)24(35)28-18-13-38-26(37)17-8-5-4-7-16(17)14-39-15-19(29-23(18)34)25(36)30(2)3/h4-5,7-8,18-20H,6,9-15H2,1-3H3,(H,27,32)(H,28,35)(H,29,34)/t18-,19-,20+/m1/s1
8ZL InChIKey InChI 1.06 DXVZHGSXTJTODF-AQNXPRMDSA-N
8ZL SMILES_CANONICAL CACTVS 3.385 CNC(=O)CCC(=O)N1CCC[C@H]1C(=O)N[C@@H]2COC(=O)c3ccccc3CSC[C@@H](NC2=O)C(=O)N(C)C
8ZL SMILES CACTVS 3.385 CNC(=O)CCC(=O)N1CCC[CH]1C(=O)N[CH]2COC(=O)c3ccccc3CSC[CH](NC2=O)C(=O)N(C)C
8ZL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CNC(=O)CCC(=O)N1CCC[C@H]1C(=O)N[C@@H]2COC(=O)c3ccccc3CSC[C@@H](NC2=O)C(=O)N(C)C
8ZL SMILES "OpenEye OEToolkits" 2.0.7 CNC(=O)CCC(=O)N1CCCC1C(=O)NC2COC(=O)c3ccccc3CSCC(NC2=O)C(=O)N(C)C
#
_pdbx_chem_comp_identifier.comp_id 8ZL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(5~{S},8~{R})-~{N},~{N}-dimethyl-8-[[(2~{S})-1-[4-(methylamino)-4-oxidanylidene-butanoyl]pyrrolidin-2-yl]carbonylamino]-7,11-bis(oxidanylidene)-10-oxa-3-thia-6-azabicyclo[10.4.0]hexadeca-1(12),13,15-triene-5-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8ZL 'Create component' 2021-11-10 PDBE
8ZL 'Initial release' 2022-03-16 RCSB
8ZL 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8ZL N1 N 13.528 -5.188 1
8ZL C7 C 11.183 -5.816 2
8ZL C8 C 12.127 -4.651 3
8ZL N2 N 10.290 -2.813 4
8ZL C9 C 11.739 -3.202 5
8ZL O1 O 14.707 -2.873 6
8ZL C1 C 18.717 -4.916 7
8ZL O5 O 7.393 -2.037 8
8ZL C5 C 13.449 -6.686 9
8ZL C6 C 12.000 -7.074 10
8ZL N3 N 8.065 0.472 11
8ZL C4 C 14.786 -4.371 12
8ZL O4 O 12.675 2.082 13
8ZL C3 C 16.122 -5.052 14
8ZL O3 O 10.574 1.145 15
8ZL C2 C 17.380 -4.235 16
8ZL N4 N 4.190 0.883 17
8ZL O6 O 5.772 -1.178 18
8ZL C23 C 5.576 0.309 19
8ZL C25 C 3.994 2.371 20
8ZL C24 C 3.000 -0.030 21
8ZL C21 C 6.766 1.222 22
8ZL C20 C 6.378 2.671 23
8ZL S S 7.128 3.970 24
8ZL C19 C 8.628 3.970 25
8ZL C18 C 9.927 4.721 26
8ZL C17 C 9.902 6.283 27
8ZL C16 C 11.250 7.074 28
8ZL C15 C 12.603 6.293 29
8ZL C14 C 12.591 4.731 30
8ZL C13 C 11.226 3.970 31
8ZL C12 C 11.226 2.470 32
8ZL C11 C 10.963 -0.304 33
8ZL C22 C 8.453 -0.976 34
8ZL C10 C 9.902 -1.365 35
8ZL O2 O 12.800 -2.141 36
8ZL O O 18.795 -6.414 37
8ZL N N 19.975 -4.099 38
8ZL C C 21.311 -4.780 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8ZL C14 C15 DOUBLE NONE 1
8ZL C14 C13 SINGLE NONE 2
8ZL C15 C16 SINGLE NONE 3
8ZL O4 C12 DOUBLE NONE 4
8ZL C12 C13 SINGLE NONE 5
8ZL C12 O3 SINGLE NONE 6
8ZL C13 C18 DOUBLE NONE 7
8ZL C16 C17 DOUBLE NONE 8
8ZL O3 C11 SINGLE NONE 9
8ZL C11 C10 SINGLE NONE 10
8ZL C17 C18 SINGLE NONE 11
8ZL C18 C19 SINGLE NONE 12
8ZL O5 C22 DOUBLE NONE 13
8ZL C10 C22 SINGLE NONE 14
8ZL C10 N2 SINGLE BEGINWEDGE 15
8ZL C19 S SINGLE NONE 16
8ZL S C20 SINGLE NONE 17
8ZL C22 N3 SINGLE NONE 18
8ZL N2 C9 SINGLE NONE 19
8ZL N3 C21 SINGLE NONE 20
8ZL C20 C21 SINGLE NONE 21
8ZL C21 C23 SINGLE BEGINWEDGE 22
8ZL C9 O2 DOUBLE NONE 23
8ZL C8 C9 SINGLE BEGINWEDGE 24
8ZL C8 C7 SINGLE NONE 25
8ZL C8 N1 SINGLE NONE 26
8ZL C24 N4 SINGLE NONE 27
8ZL C7 C6 SINGLE NONE 28
8ZL C23 N4 SINGLE NONE 29
8ZL C23 O6 DOUBLE NONE 30
8ZL N4 C25 SINGLE NONE 31
8ZL O C1 DOUBLE NONE 32
8ZL O1 C4 DOUBLE NONE 33
8ZL N1 C4 SINGLE NONE 34
8ZL N1 C5 SINGLE NONE 35
8ZL C6 C5 SINGLE NONE 36
8ZL C4 C3 SINGLE NONE 37
8ZL C1 C2 SINGLE NONE 38
8ZL C1 N SINGLE NONE 39
8ZL C2 C3 SINGLE NONE 40
8ZL C N SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8ZL MurckoScaffold S1 scaffold 'O=C1OC[C@@H](NC(=O)[C@@H]2CCCN2)C(=O)NCCSCc2ccccc21' InChI=1S/C18H23N3O4S/c22-16-15(21-17(23)14-6-3-7-19-14)10-25-18(24)13-5-2-1-4-12(13)11-26-9-8-20-16/h1-2,4-5,14-15,19H,3,6-11H2,(H,20,22)(H,21,23)/t14-,15+/m0/s1 ZRWAARHTKCDTCK-LSDHHAIUSA-N
8ZL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8ZL peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
8ZL phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8ZL N1 S1 1
8ZL C7 S1 1
8ZL C8 S1 1
8ZL N2 S1 1
8ZL C9 S1 1
8ZL O5 S1 1
8ZL C5 S1 1
8ZL C6 S1 1
8ZL N3 S1 1
8ZL O4 S1 1
8ZL O3 S1 1
8ZL C21 S1 1
8ZL C20 S1 1
8ZL S S1 1
8ZL C19 S1 1
8ZL C18 S1 1
8ZL C17 S1 1
8ZL C16 S1 1
8ZL C15 S1 1
8ZL C14 S1 1
8ZL C13 S1 1
8ZL C12 S1 1
8ZL C11 S1 1
8ZL C22 S1 1
8ZL C10 S1 1
8ZL O2 S1 1
8ZL N1 F1 1
8ZL C4 F1 1
8ZL O1 F1 1
8ZL C3 F1 1
8ZL N2 F1 2
8ZL C9 F1 2
8ZL O2 F1 2
8ZL C8 F1 2
8ZL N3 F1 3
8ZL C22 F1 3
8ZL O5 F1 3
8ZL C10 F1 3
8ZL N4 F1 4
8ZL C23 F1 4
8ZL O6 F1 4
8ZL C21 F1 4
8ZL N F1 5
8ZL C1 F1 5
8ZL O F1 5
8ZL C2 F1 5
8ZL O5 F2 1
8ZL C22 F2 1
8ZL C10 F2 1
8ZL N2 F2 1
8ZL O6 F2 2
8ZL C23 F2 2
8ZL C21 F2 2
8ZL N3 F2 2
8ZL O2 F2 3
8ZL C9 F2 3
8ZL C8 F2 3
8ZL N1 F2 3
8ZL C18 F3 1
8ZL C13 F3 1
8ZL C14 F3 1
8ZL C15 F3 1
8ZL C16 F3 1
8ZL C17 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8ZL
_pdbe_chem_comp_rdkit_properties.exactmw 561.226
_pdbe_chem_comp_rdkit_properties.amw 561.661
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.538
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 280.442
_pdbe_chem_comp_rdkit_properties.tpsa 154.220
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.444
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.946
_pdbe_chem_comp_rdkit_properties.chi0v 19.319
_pdbe_chem_comp_rdkit_properties.chi1v 10.291
_pdbe_chem_comp_rdkit_properties.chi2v 4.425
_pdbe_chem_comp_rdkit_properties.chi3v 4.425
_pdbe_chem_comp_rdkit_properties.chi4v 2.739
_pdbe_chem_comp_rdkit_properties.chi0n 53.502
_pdbe_chem_comp_rdkit_properties.chi1n 26.816
_pdbe_chem_comp_rdkit_properties.chi2n 3.824
_pdbe_chem_comp_rdkit_properties.chi3n 3.824
_pdbe_chem_comp_rdkit_properties.chi4n 2.203
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.610
_pdbe_chem_comp_rdkit_properties.kappa1 7.987
_pdbe_chem_comp_rdkit_properties.kappa2 13.969
_pdbe_chem_comp_rdkit_properties.kappa3 7.944
_pdbe_chem_comp_rdkit_properties.Phi 2.861
#
_pdbe_chem_comp_external_mappings.comp_id 8ZL
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 162678567
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8ZL N1 4.172 -1.140 3.044 ETKDGv3 1
8ZL C7 2.793 -1.008 4.973 ETKDGv3 2
8ZL C8 2.772 -1.180 3.452 ETKDGv3 3
8ZL N2 0.807 -0.347 2.056 ETKDGv3 4
8ZL C9 2.004 -0.063 2.794 ETKDGv3 5
8ZL O1 5.911 -1.377 1.503 ETKDGv3 6
8ZL C1 2.642 -1.533 -1.493 ETKDGv3 7
8ZL O5 0.184 0.820 -0.897 ETKDGv3 8
8ZL C5 5.054 -0.732 4.127 ETKDGv3 9
8ZL C6 4.145 -0.383 5.298 ETKDGv3 10
8ZL N3 -1.490 -0.636 -0.155 ETKDGv3 11
8ZL C4 4.681 -1.515 1.746 ETKDGv3 12
8ZL O4 -1.197 3.760 1.930 ETKDGv3 13
8ZL C3 3.796 -2.055 0.654 ETKDGv3 14
8ZL O3 -2.255 1.720 1.721 ETKDGv3 15
8ZL C2 3.449 -0.964 -0.362 ETKDGv3 16
8ZL N4 -1.479 -2.208 -3.523 ETKDGv3 17
8ZL O6 -1.641 -3.105 -1.369 ETKDGv3 18
8ZL C23 -1.725 -2.081 -2.103 ETKDGv3 19
8ZL C25 -1.141 -3.528 -4.066 ETKDGv3 20
8ZL C24 -1.568 -1.051 -4.422 ETKDGv3 21
8ZL C21 -2.140 -0.774 -1.463 ETKDGv3 22
8ZL C20 -3.676 -0.715 -1.328 ETKDGv3 23
8ZL S -4.287 0.566 -0.160 ETKDGv3 24
8ZL C19 -3.526 2.021 -0.962 ETKDGv3 25
8ZL C18 -3.952 3.287 -0.260 ETKDGv3 26
8ZL C17 -5.117 4.023 -0.815 ETKDGv3 27
8ZL C16 -5.496 5.194 -0.293 ETKDGv3 28
8ZL C15 -4.759 5.767 0.845 ETKDGv3 29
8ZL C14 -3.720 5.110 1.370 ETKDGv3 30
8ZL C13 -3.295 3.797 0.819 ETKDGv3 31
8ZL C12 -2.179 3.097 1.495 ETKDGv3 32
8ZL C11 -1.250 0.955 2.385 ETKDGv3 33
8ZL C22 -0.435 0.311 0.078 ETKDGv3 34
8ZL C10 -0.035 0.703 1.476 ETKDGv3 35
8ZL O2 2.420 1.124 2.902 ETKDGv3 36
8ZL O 1.478 -1.963 -1.269 ETKDGv3 37
8ZL N 3.194 -1.603 -2.814 ETKDGv3 38
8ZL C 2.440 -2.162 -3.930 ETKDGv3 39
8ZL H1 2.733 -2.009 5.456 ETKDGv3 40
8ZL H2 1.954 -0.385 5.354 ETKDGv3 41
8ZL H3 2.325 -2.169 3.213 ETKDGv3 42
8ZL H4 0.465 -1.334 2.018 ETKDGv3 43
8ZL H5 5.727 -1.574 4.396 ETKDGv3 44
8ZL H6 5.657 0.152 3.823 ETKDGv3 45
8ZL H7 4.552 -0.772 6.257 ETKDGv3 46
8ZL H8 4.035 0.722 5.370 ETKDGv3 47
8ZL H9 -1.815 -1.241 0.633 ETKDGv3 48
8ZL H10 2.868 -2.495 1.068 ETKDGv3 49
8ZL H11 4.340 -2.876 0.136 ETKDGv3 50
8ZL H12 4.384 -0.509 -0.757 ETKDGv3 51
8ZL H13 2.864 -0.157 0.126 ETKDGv3 52
8ZL H14 -0.237 -3.923 -3.556 ETKDGv3 53
8ZL H15 -1.987 -4.227 -3.900 ETKDGv3 54
8ZL H16 -0.929 -3.487 -5.155 ETKDGv3 55
8ZL H17 -2.575 -0.590 -4.347 ETKDGv3 56
8ZL H18 -0.791 -0.305 -4.154 ETKDGv3 57
8ZL H19 -1.409 -1.341 -5.482 ETKDGv3 58
8ZL H20 -1.831 0.068 -2.112 ETKDGv3 59
8ZL H21 -4.054 -1.691 -0.955 ETKDGv3 60
8ZL H22 -4.132 -0.539 -2.325 ETKDGv3 61
8ZL H23 -3.839 2.050 -2.028 ETKDGv3 62
8ZL H24 -2.422 1.951 -0.950 ETKDGv3 63
8ZL H25 -5.667 3.616 -1.655 ETKDGv3 64
8ZL H26 -6.343 5.725 -0.707 ETKDGv3 65
8ZL H27 -5.065 6.720 1.259 ETKDGv3 66
8ZL H28 -3.196 5.540 2.215 ETKDGv3 67
8ZL H29 -1.698 -0.016 2.685 ETKDGv3 68
8ZL H30 -0.930 1.470 3.317 ETKDGv3 69
8ZL H31 0.536 1.655 1.407 ETKDGv3 70
8ZL H32 4.160 -1.248 -2.991 ETKDGv3 71
8ZL H33 3.044 -2.105 -4.859 ETKDGv3 72
8ZL H34 1.502 -1.586 -4.076 ETKDGv3 73
8ZL H35 2.197 -3.225 -3.724 ETKDGv3 74
#