data_8I5
#
_chem_comp.id 8I5
_chem_comp.name "3N methyl nemycin B"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H48 N6 O13"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-19
_chem_comp.pdbx_modified_date 2022-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 628.670
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8I5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q10
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8I5 C6 C1 C 0 1 N N N N N N 11.057 41.989 19.436 3.478 -3.201 -2.454 C6 8I5 1
8I5 C14 C2 C 0 1 N N R N N N 8.557 44.037 26.624 -1.663 2.078 0.516 C14 8I5 2
8I5 C15 C3 C 0 1 N N R N N N 8.727 42.551 26.924 -2.008 0.851 1.389 C15 8I5 3
8I5 C16 C4 C 0 1 N N S N N N 9.752 42.149 25.864 -0.708 0.573 2.176 C16 8I5 4
8I5 C10 C5 C 0 1 N N R N N N 10.410 45.534 22.375 2.922 0.870 -0.284 C10 8I5 5
8I5 O11 O1 O 0 1 N N N N N N 9.340 44.614 24.401 0.693 1.775 -0.053 O11 8I5 6
8I5 C12 C6 C 0 1 N N S N N N 8.572 46.753 23.626 2.482 3.311 -0.583 C12 8I5 7
8I5 C13 C7 C 0 1 N N S N N N 9.759 44.432 25.761 -0.195 2.396 0.878 C13 8I5 8
8I5 O1 O2 O 0 1 N N N N N N 11.678 44.878 22.485 2.541 -0.305 0.434 O1 8I5 9
8I5 CH3 C8 C 0 1 N N N N N N 11.383 47.781 19.470 6.640 0.265 -0.211 CH3 8I5 10
8I5 C1 C9 C 0 1 N N R N N N 11.650 43.485 22.800 1.474 -1.037 -0.172 C1 8I5 11
8I5 C11 C10 C 0 1 N N R N N N 9.782 45.818 23.754 2.074 2.053 0.187 C11 8I5 12
8I5 C17 C11 C 0 1 N N N N N N 10.538 40.867 26.107 -1.034 0.119 3.600 C17 8I5 13
8I5 C18 C12 C 0 1 N N R N N N 7.368 40.642 27.521 -3.745 -0.374 0.282 C18 8I5 14
8I5 C19 C13 C 0 1 N N S N N N 6.803 39.540 26.590 -4.028 -1.724 -0.384 C19 8I5 15
8I5 C2 C14 C 0 1 N N S N N N 13.083 43.054 23.135 0.953 -2.088 0.812 C2 8I5 16
8I5 C20 C15 C 0 1 N N R N N N 5.478 38.891 27.024 -5.515 -1.805 -0.742 C20 8I5 17
8I5 C21 C16 C 0 1 N N S N N N 5.211 39.018 28.520 -5.877 -0.623 -1.647 C21 8I5 18
8I5 C22 C17 C 0 1 N N S N N N 5.318 40.483 28.922 -5.522 0.683 -0.933 C22 8I5 19
8I5 C23 C18 C 0 1 N N N N N N 4.372 41.403 28.139 -5.825 1.867 -1.854 C23 8I5 20
8I5 C3 C19 C 0 1 N N R N N N 13.930 42.847 21.876 2.076 -3.081 1.129 C3 8I5 21
8I5 C4 C20 C 0 1 N N S N N N 13.181 42.045 20.810 2.575 -3.704 -0.178 C4 8I5 22
8I5 C5 C21 C 0 1 N N R N N N 11.827 42.697 20.542 3.034 -2.591 -1.123 C5 8I5 23
8I5 C7 C22 C 0 1 N N R N N N 8.920 48.034 22.866 3.960 3.609 -0.326 C7 8I5 24
8I5 C8 C23 C 0 1 N N N N N N 9.399 47.682 21.467 4.808 2.426 -0.797 C8 8I5 25
8I5 C9 C24 C 0 1 N N S N N N 10.660 46.827 21.579 4.401 1.168 -0.028 C9 8I5 26
8I5 N19 N1 N 0 1 N N N N N N 2.964 41.032 28.375 -5.485 3.121 -1.168 N19 8I5 27
8I5 N2 N2 N 0 1 N N N N N N 13.065 41.832 23.963 -0.180 -2.805 0.210 N2 8I5 28
8I5 N23 N3 N 0 1 N N N N N N 7.809 38.484 26.334 -3.686 -2.810 0.543 N23 8I5 29
8I5 N6 N4 N 0 1 N N N N N N 10.832 42.975 18.363 4.057 -2.153 -3.305 N6 8I5 30
8I5 N7 N5 N 0 1 N N N N N N 7.756 48.940 22.778 4.352 4.817 -1.065 N7 8I5 31
8I5 N9 N6 N 0 1 N N N N N N 11.193 46.529 20.227 5.215 0.032 -0.480 N9 8I5 32
8I5 O12 O3 O 0 1 N N N N N N 8.065 47.073 24.931 1.690 4.416 -0.143 O12 8I5 33
8I5 O14 O4 O 0 1 N N N N N N 8.503 44.805 27.829 -2.510 3.181 0.845 O14 8I5 34
8I5 O16 O5 O 0 1 N N N N N N 10.614 43.286 25.805 -0.012 1.838 2.198 O16 8I5 35
8I5 O17 O6 O 0 1 N N N N N N 10.062 39.899 25.163 0.173 -0.244 4.273 O17 8I5 36
8I5 O18 O7 O 0 1 N N N N N N 7.471 41.875 26.788 -2.349 -0.268 0.568 O18 8I5 37
8I5 O20 O8 O 0 1 N N N N N N 5.473 37.506 26.636 -6.298 -1.751 0.452 O20 8I5 38
8I5 O21 O9 O 0 1 N N N N N N 3.913 38.502 28.848 -5.141 -0.715 -2.869 O21 8I5 39
8I5 O22 O10 O 0 1 N N N N N N 6.689 40.884 28.775 -4.132 0.681 -0.600 O22 8I5 40
8I5 O3 O11 O 0 1 N N N N N N 15.163 42.193 22.221 1.577 -4.108 1.989 O3 8I5 41
8I5 O4 O12 O 0 1 N N N N N N 13.954 41.996 19.601 3.671 -4.579 0.098 O4 8I5 42
8I5 O5 O13 O 0 1 N N N N N N 11.055 42.707 21.744 1.952 -1.686 -1.352 O5 8I5 43
8I5 H1 H1 H 0 1 N N N N N N 10.093 41.624 19.821 4.226 -3.973 -2.268 H1 8I5 44
8I5 H2 H2 H 0 1 N N N N N N 11.643 41.141 19.052 2.618 -3.644 -2.956 H2 8I5 45
8I5 H3 H3 H 0 1 N N N N N N 7.637 44.180 26.039 -1.752 1.832 -0.542 H3 8I5 46
8I5 H4 H4 H 0 1 N N N N N N 9.151 42.414 27.930 -2.825 1.086 2.072 H4 8I5 47
8I5 H5 H5 H 0 1 N N N N N N 9.223 42.046 24.905 -0.110 -0.182 1.666 H5 8I5 48
8I5 H6 H6 H 0 1 N N N N N N 9.714 44.904 21.802 2.763 0.711 -1.351 H6 8I5 49
8I5 H7 H7 H 0 1 N N N N N N 7.794 46.222 23.057 2.323 3.152 -1.649 H7 8I5 50
8I5 H8 H8 H 0 1 N N N N N N 10.248 45.330 26.166 -0.032 3.474 0.896 H8 8I5 51
8I5 H9 H9 H 0 1 N N N N N N 11.778 47.549 18.470 7.228 -0.544 -0.642 H9 8I5 52
8I5 H10 H10 H 0 1 N N N N N N 10.418 48.300 19.372 6.944 1.212 -0.657 H10 8I5 53
8I5 H11 H11 H 0 1 N N N N N N 12.094 48.428 20.004 6.805 0.301 0.866 H11 8I5 54
8I5 H12 H12 H 0 1 N N N N N N 11.049 43.347 23.711 0.667 -0.353 -0.434 H12 8I5 55
8I5 H13 H13 H 0 1 N N N N N N 10.538 46.316 24.379 2.233 2.212 1.253 H13 8I5 56
8I5 H14 H14 H 0 1 N N N N N N 10.369 40.509 27.133 -1.519 0.934 4.139 H14 8I5 57
8I5 H15 H15 H 0 1 N N N N N N 11.612 41.048 25.954 -1.702 -0.741 3.564 H15 8I5 58
8I5 H16 H16 H 0 1 N N N N N N 8.393 40.328 27.768 -4.313 -0.300 1.209 H16 8I5 59
8I5 H17 H17 H 0 1 N N N N N N 6.603 40.030 25.626 -3.429 -1.815 -1.291 H17 8I5 60
8I5 H18 H18 H 0 1 N N N N N N 13.546 43.862 23.720 0.628 -1.599 1.730 H18 8I5 61
8I5 H19 H19 H 0 1 N N N N N N 4.666 39.410 26.494 -5.713 -2.740 -1.267 H19 8I5 62
8I5 H20 H20 H 0 1 N N N N N N 5.983 38.451 29.061 -6.945 -0.644 -1.863 H20 8I5 63
8I5 H21 H21 H 0 1 N N N N N N 5.043 40.556 29.984 -6.114 0.771 -0.021 H21 8I5 64
8I5 H22 H22 H 0 1 N N N N N N 4.592 41.316 27.065 -5.234 1.779 -2.765 H22 8I5 65
8I5 H23 H23 H 0 1 N N N N N N 4.530 42.442 28.463 -6.885 1.867 -2.107 H23 8I5 66
8I5 H24 H24 H 0 1 N N N N N N 14.155 43.838 21.455 2.896 -2.558 1.622 H24 8I5 67
8I5 H25 H25 H 0 1 N N N N N N 13.013 41.026 21.189 1.768 -4.268 -0.645 H25 8I5 68
8I5 H26 H26 H 0 1 N N N N N N 12.008 43.733 20.220 3.868 -2.053 -0.673 H26 8I5 69
8I5 H27 H27 H 0 1 N N N N N N 9.736 48.545 23.398 4.119 3.768 0.740 H27 8I5 70
8I5 H28 H28 H 0 1 N N N N N N 9.625 48.604 20.911 4.649 2.267 -1.864 H28 8I5 71
8I5 H29 H29 H 0 1 N N N N N N 8.616 47.118 20.939 5.861 2.638 -0.615 H29 8I5 72
8I5 H30 H30 H 0 1 N N N N N N 11.414 47.413 22.125 4.560 1.327 1.039 H30 8I5 73
8I5 H31 H31 H 0 1 N N N N N N 2.366 41.643 27.856 -5.676 3.918 -1.756 H31 8I5 74
8I5 H32 H32 H 0 1 N N N N N N 2.814 40.089 28.079 -5.973 3.195 -0.288 H32 8I5 75
8I5 H34 H34 H 0 1 N N N N N N 12.507 41.989 24.778 -0.932 -2.170 -0.013 H34 8I5 76
8I5 H35 H35 H 0 1 N N N N N N 12.677 41.077 23.434 0.112 -3.321 -0.607 H35 8I5 77
8I5 H37 H37 H 0 1 N N N N N N 8.671 38.905 26.052 -2.709 -2.777 0.794 H37 8I5 78
8I5 H38 H38 H 0 1 N N N N N N 7.955 37.954 27.169 -4.271 -2.782 1.365 H38 8I5 79
8I5 H40 H40 H 0 1 N N N N N N 10.326 42.545 17.615 4.444 -2.546 -4.149 H40 8I5 80
8I5 H41 H41 H 0 1 N N N N N N 10.304 43.744 18.723 3.374 -1.442 -3.517 H41 8I5 81
8I5 H43 H43 H 0 1 N N N N N N 7.442 49.171 23.699 5.325 5.035 -0.912 H43 8I5 82
8I5 H44 H44 H 0 1 N N N N N N 8.020 49.776 22.297 4.154 4.719 -2.049 H44 8I5 83
8I5 H46 H46 H 0 1 N N N N N N 10.547 45.942 19.739 5.058 -0.158 -1.459 H46 8I5 84
8I5 H48 H48 H 0 1 N N N N N N 7.852 46.271 25.394 1.894 5.249 -0.589 H48 8I5 85
8I5 H49 H49 H 0 1 N N N N N N 7.749 44.538 28.342 -2.336 3.979 0.326 H49 8I5 86
8I5 H50 H50 H 0 1 N N N N N N 10.531 39.081 25.284 0.042 -0.542 5.183 H50 8I5 87
8I5 H51 H51 H 0 1 N N N N N N 4.655 37.105 26.904 -7.252 -1.798 0.299 H51 8I5 88
8I5 H52 H52 H 0 1 N N N N N N 3.764 38.589 29.782 -5.313 -1.522 -3.372 H52 8I5 89
8I5 H53 H53 H 0 1 N N N N N N 15.617 42.701 22.883 2.237 -4.772 2.231 H53 8I5 90
8I5 H54 H54 H 0 1 N N N N N N 14.794 41.589 19.778 3.452 -5.307 0.696 H54 8I5 91
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8I5 N6 C6 SING N N 1
8I5 C6 C5 SING N N 2
8I5 CH3 N9 SING N N 3
8I5 O4 C4 SING N N 4
8I5 N9 C9 SING N N 5
8I5 C5 C4 SING N N 6
8I5 C5 O5 SING N N 7
8I5 C4 C3 SING N N 8
8I5 C8 C9 SING N N 9
8I5 C8 C7 SING N N 10
8I5 C9 C10 SING N N 11
8I5 O5 C1 SING N N 12
8I5 C3 O3 SING N N 13
8I5 C3 C2 SING N N 14
8I5 C10 O1 SING N N 15
8I5 C10 C11 SING N N 16
8I5 O1 C1 SING N N 17
8I5 N7 C7 SING N N 18
8I5 C1 C2 SING N N 19
8I5 C7 C12 SING N N 20
8I5 C2 N2 SING N N 21
8I5 C12 C11 SING N N 22
8I5 C12 O12 SING N N 23
8I5 C11 O11 SING N N 24
8I5 O11 C13 SING N N 25
8I5 O17 C17 SING N N 26
8I5 C13 O16 SING N N 27
8I5 C13 C14 SING N N 28
8I5 O16 C16 SING N N 29
8I5 C16 C17 SING N N 30
8I5 C16 C15 SING N N 31
8I5 N23 C19 SING N N 32
8I5 C19 C20 SING N N 33
8I5 C19 C18 SING N N 34
8I5 C14 C15 SING N N 35
8I5 C14 O14 SING N N 36
8I5 O20 C20 SING N N 37
8I5 O18 C15 SING N N 38
8I5 O18 C18 SING N N 39
8I5 C20 C21 SING N N 40
8I5 C18 O22 SING N N 41
8I5 C23 N19 SING N N 42
8I5 C23 C22 SING N N 43
8I5 C21 O21 SING N N 44
8I5 C21 C22 SING N N 45
8I5 O22 C22 SING N N 46
8I5 C6 H1 SING N N 47
8I5 C6 H2 SING N N 48
8I5 C14 H3 SING N N 49
8I5 C15 H4 SING N N 50
8I5 C16 H5 SING N N 51
8I5 C10 H6 SING N N 52
8I5 C12 H7 SING N N 53
8I5 C13 H8 SING N N 54
8I5 CH3 H9 SING N N 55
8I5 CH3 H10 SING N N 56
8I5 CH3 H11 SING N N 57
8I5 C1 H12 SING N N 58
8I5 C11 H13 SING N N 59
8I5 C17 H14 SING N N 60
8I5 C17 H15 SING N N 61
8I5 C18 H16 SING N N 62
8I5 C19 H17 SING N N 63
8I5 C2 H18 SING N N 64
8I5 C20 H19 SING N N 65
8I5 C21 H20 SING N N 66
8I5 C22 H21 SING N N 67
8I5 C23 H22 SING N N 68
8I5 C23 H23 SING N N 69
8I5 C3 H24 SING N N 70
8I5 C4 H25 SING N N 71
8I5 C5 H26 SING N N 72
8I5 C7 H27 SING N N 73
8I5 C8 H28 SING N N 74
8I5 C8 H29 SING N N 75
8I5 C9 H30 SING N N 76
8I5 N19 H31 SING N N 77
8I5 N19 H32 SING N N 78
8I5 N2 H34 SING N N 79
8I5 N2 H35 SING N N 80
8I5 N23 H37 SING N N 81
8I5 N23 H38 SING N N 82
8I5 N6 H40 SING N N 83
8I5 N6 H41 SING N N 84
8I5 N7 H43 SING N N 85
8I5 N7 H44 SING N N 86
8I5 N9 H46 SING N N 87
8I5 O12 H48 SING N N 88
8I5 O14 H49 SING N N 89
8I5 O17 H50 SING N N 90
8I5 O20 H51 SING N N 91
8I5 O21 H52 SING N N 92
8I5 O3 H53 SING N N 93
8I5 O4 H54 SING N N 94
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8I5 InChI InChI 1.06 InChI=1S/C24H48N6O13/c1-30-7-2-6(27)13(32)21(19(7)41-22-11(28)16(35)14(33)8(3-25)38-22)43-24-18(37)20(10(5-31)40-24)42-23-12(29)17(36)15(34)9(4-26)39-23/h6-24,30-37H,2-5,25-29H2,1H3/t6-,7+,8-,9+,10+,11+,12+,13+,14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+/m1/s1
8I5 InChIKey InChI 1.06 FCJYTWXMZQXWFB-HGRVKHENSA-N
8I5 SMILES_CANONICAL CACTVS 3.385 CN[C@H]1C[C@@H](N)[C@H](O)[C@@H](O[C@@H]2O[C@@H](CO)[C@H](O[C@H]3O[C@@H](CN)[C@@H](O)[C@H](O)[C@@H]3N)[C@H]2O)[C@@H]1O[C@H]4O[C@H](CN)[C@@H](O)[C@H](O)[C@@H]4N
8I5 SMILES CACTVS 3.385 CN[CH]1C[CH](N)[CH](O)[CH](O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CN)[CH](O)[CH](O)[CH]3N)[CH]2O)[CH]1O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N
8I5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN[C@H]1C[C@H]([C@@H]([C@H]([C@@H]1O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@H]([C@@H](O3)CO)O[C@@H]4[C@H]([C@H]([C@@H]([C@@H](O4)CN)O)O)N)O)O)N
8I5 SMILES "OpenEye OEToolkits" 2.0.7 CNC1CC(C(C(C1OC2C(C(C(C(O2)CN)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N
#
_pdbx_chem_comp_identifier.comp_id 8I5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{R},3~{S},4~{R},5~{S},6~{R})-2-(aminomethyl)-6-[(1~{R},2~{R},3~{S},4~{R},6~{S})-2-[(2~{S},3~{R},4~{R},5~{S})-4-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)-3-oxidanyl-oxolan-2-yl]oxy-4-azanyl-6-(methylamino)-3-oxidanyl-cyclohexyl]oxy-5-azanyl-oxane-3,4-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8I5 'Create component' 2021-10-19 PDBE
8I5 'Modify descriptor' 2022-08-22 RCSB
8I5 'Initial release' 2022-11-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8I5 C6 C 15.451 7.541 1
8I5 C14 C 10.215 -1.730 2
8I5 C15 C 9.002 -2.611 3
8I5 C16 C 7.788 -1.730 4
8I5 C10 C 10.905 3.494 5
8I5 O11 O 10.633 0.910 6
8I5 C12 C 8.531 2.438 7
8I5 C13 C 9.752 -0.303 8
8I5 O1 O 12.397 3.337 9
8I5 CH3 C 9.238 7.238 10
8I5 C1 C 13.767 3.947 11
8I5 C11 C 10.023 2.281 12
8I5 C17 C 6.362 -2.193 13
8I5 C18 C 7.702 -4.861 14
8I5 C19 C 7.702 -6.361 15
8I5 C2 C 14.980 3.066 16
8I5 C20 C 6.404 -7.111 17
8I5 C21 C 5.104 -6.361 18
8I5 C22 C 5.104 -4.861 19
8I5 C23 C 3.805 -4.111 20
8I5 C3 C 16.351 3.676 21
8I5 C4 C 16.508 5.168 22
8I5 C5 C 15.294 6.050 23
8I5 C7 C 7.921 3.808 24
8I5 C8 C 8.803 5.021 25
8I5 C9 C 10.295 4.865 26
8I5 N19 N 3.805 -2.611 27
8I5 N2 N 14.824 1.574 28
8I5 N23 N 9.002 -7.111 29
8I5 N6 N 16.821 8.152 30
8I5 N7 N 6.429 3.965 31
8I5 N9 N 10.451 6.356 32
8I5 O12 O 7.650 1.224 33
8I5 O14 O 11.642 -2.193 34
8I5 O16 O 8.252 -0.303 35
8I5 O17 O 5.247 -1.190 36
8I5 O18 O 9.002 -4.111 37
8I5 O20 O 6.404 -8.611 38
8I5 O21 O 3.805 -7.111 39
8I5 O22 O 6.404 -4.111 40
8I5 O3 O 17.564 2.794 41
8I5 O4 O 17.878 5.778 42
8I5 O5 O 13.924 5.439 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8I5 N6 C6 SINGLE NONE 1
8I5 C5 C6 SINGLE BEGINDASH 2
8I5 CH3 N9 SINGLE NONE 3
8I5 C4 O4 SINGLE BEGINWEDGE 4
8I5 C9 N9 SINGLE BEGINDASH 5
8I5 C5 C4 SINGLE NONE 6
8I5 C5 O5 SINGLE NONE 7
8I5 C4 C3 SINGLE NONE 8
8I5 C8 C9 SINGLE NONE 9
8I5 C8 C7 SINGLE NONE 10
8I5 C9 C10 SINGLE NONE 11
8I5 O5 C1 SINGLE NONE 12
8I5 C3 O3 SINGLE BEGINDASH 13
8I5 C3 C2 SINGLE NONE 14
8I5 C10 O1 SINGLE BEGINWEDGE 15
8I5 C10 C11 SINGLE NONE 16
8I5 C1 O1 SINGLE BEGINWEDGE 17
8I5 C7 N7 SINGLE BEGINDASH 18
8I5 C1 C2 SINGLE NONE 19
8I5 C7 C12 SINGLE NONE 20
8I5 C2 N2 SINGLE BEGINDASH 21
8I5 C12 C11 SINGLE NONE 22
8I5 C12 O12 SINGLE BEGINWEDGE 23
8I5 C11 O11 SINGLE BEGINDASH 24
8I5 C13 O11 SINGLE BEGINWEDGE 25
8I5 O17 C17 SINGLE NONE 26
8I5 C13 O16 SINGLE NONE 27
8I5 C13 C14 SINGLE NONE 28
8I5 O16 C16 SINGLE NONE 29
8I5 C16 C17 SINGLE BEGINDASH 30
8I5 C16 C15 SINGLE NONE 31
8I5 C19 N23 SINGLE BEGINWEDGE 32
8I5 C19 C20 SINGLE NONE 33
8I5 C19 C18 SINGLE NONE 34
8I5 C14 C15 SINGLE NONE 35
8I5 C14 O14 SINGLE BEGINDASH 36
8I5 C20 O20 SINGLE BEGINWEDGE 37
8I5 C15 O18 SINGLE BEGINWEDGE 38
8I5 C18 O18 SINGLE BEGINDASH 39
8I5 C20 C21 SINGLE NONE 40
8I5 C18 O22 SINGLE NONE 41
8I5 C23 N19 SINGLE NONE 42
8I5 C22 C23 SINGLE BEGINDASH 43
8I5 C21 O21 SINGLE BEGINDASH 44
8I5 C21 C22 SINGLE NONE 45
8I5 O22 C22 SINGLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8I5 MurckoScaffold S1 scaffold 'C1CC[C@@H](O[C@H]2CO[C@@H](O[C@@H]3CCCC[C@H]3O[C@@H]3CCCCO3)C2)OC1' InChI=1S/C20H34O6/c1-2-8-17(16(7-1)25-19-10-4-6-12-22-19)26-20-13-15(14-23-20)24-18-9-3-5-11-21-18/h15-20H,1-14H2/t15-,16-,17-,18-,19-,20+/m1/s1 YUBLUHFPCGJZSV-PJBUMPDVSA-N
8I5 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
8I5 furanose F2 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
8I5 pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
8I5 ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8I5 C14 S1 1
8I5 C15 S1 1
8I5 C16 S1 1
8I5 C10 S1 1
8I5 O11 S1 1
8I5 C12 S1 1
8I5 C13 S1 1
8I5 O1 S1 1
8I5 C1 S1 1
8I5 C11 S1 1
8I5 C18 S1 1
8I5 C19 S1 1
8I5 C2 S1 1
8I5 C20 S1 1
8I5 C21 S1 1
8I5 C22 S1 1
8I5 C3 S1 1
8I5 C4 S1 1
8I5 C5 S1 1
8I5 C7 S1 1
8I5 C8 S1 1
8I5 C9 S1 1
8I5 O16 S1 1
8I5 O18 S1 1
8I5 O22 S1 1
8I5 O5 S1 1
8I5 C10 F1 1
8I5 C9 F1 1
8I5 C8 F1 1
8I5 C7 F1 1
8I5 C12 F1 1
8I5 C11 F1 1
8I5 C15 F2 1
8I5 C16 F2 1
8I5 O16 F2 1
8I5 C13 F2 1
8I5 C14 F2 1
8I5 O11 F2 1
8I5 C21 F3 1
8I5 C22 F3 1
8I5 O22 F3 1
8I5 C18 F3 1
8I5 C19 F3 1
8I5 C20 F3 1
8I5 O18 F3 1
8I5 C4 F3 2
8I5 C5 F3 2
8I5 O5 F3 2
8I5 C1 F3 2
8I5 C2 F3 2
8I5 C3 F3 2
8I5 O1 F3 2
8I5 C14 F4 1
8I5 C15 F4 1
8I5 C16 F4 1
8I5 O16 F4 1
8I5 C13 F4 1
8I5 C17 F4 1
8I5 O17 F4 1
8I5 O18 F4 1
8I5 O14 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8I5
_pdbe_chem_comp_rdkit_properties.exactmw 628.328
_pdbe_chem_comp_rdkit_properties.amw 628.677
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 19
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 18
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 13
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 91
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 19
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 316.284
_pdbe_chem_comp_rdkit_properties.tpsa 339.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP -8.635
_pdbe_chem_comp_rdkit_properties.CrippenMR 143.228
_pdbe_chem_comp_rdkit_properties.chi0v 19.991
_pdbe_chem_comp_rdkit_properties.chi1v 10.444
_pdbe_chem_comp_rdkit_properties.chi2v 4.895
_pdbe_chem_comp_rdkit_properties.chi3v 4.895
_pdbe_chem_comp_rdkit_properties.chi4v 2.963
_pdbe_chem_comp_rdkit_properties.chi0n 67.991
_pdbe_chem_comp_rdkit_properties.chi1n 33.221
_pdbe_chem_comp_rdkit_properties.chi2n 4.895
_pdbe_chem_comp_rdkit_properties.chi3n 4.895
_pdbe_chem_comp_rdkit_properties.chi4n 2.963
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.760
_pdbe_chem_comp_rdkit_properties.kappa1 8.263
_pdbe_chem_comp_rdkit_properties.kappa2 14.770
_pdbe_chem_comp_rdkit_properties.kappa3 7.001
_pdbe_chem_comp_rdkit_properties.Phi 2.838
#
_pdbe_chem_comp_external_mappings.comp_id 8I5
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 165416270
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8I5 C6 -5.673 2.552 -0.683 ETKDGv3 1
8I5 C14 1.511 -0.417 -0.353 ETKDGv3 2
8I5 C15 1.970 -0.067 -1.751 ETKDGv3 3
8I5 C16 0.971 -0.849 -2.610 ETKDGv3 4
8I5 C10 -2.421 -1.065 1.643 ETKDGv3 5
8I5 O11 -0.443 -1.645 0.379 ETKDGv3 6
8I5 C12 -0.298 -1.904 2.764 ETKDGv3 7
8I5 C13 0.019 -0.672 -0.541 ETKDGv3 8
8I5 O1 -2.895 -0.219 0.605 ETKDGv3 9
8I5 CH3 -4.956 0.454 3.938 ETKDGv3 10
8I5 C1 -4.082 -0.704 -0.017 ETKDGv3 11
8I5 C11 -0.875 -1.066 1.603 ETKDGv3 12
8I5 C17 0.565 -0.093 -3.881 ETKDGv3 13
8I5 C18 4.266 0.331 -1.447 ETKDGv3 14
8I5 C19 5.586 0.168 -2.247 ETKDGv3 15
8I5 C2 -3.764 -1.261 -1.419 ETKDGv3 16
8I5 C20 6.820 0.375 -1.323 ETKDGv3 17
8I5 C21 6.501 1.399 -0.223 ETKDGv3 18
8I5 C22 5.240 0.939 0.590 ETKDGv3 19
8I5 C23 5.572 0.389 1.990 ETKDGv3 20
8I5 C3 -3.379 -0.109 -2.380 ETKDGv3 21
8I5 C4 -4.373 1.070 -2.303 ETKDGv3 22
8I5 C5 -4.607 1.449 -0.821 ETKDGv3 23
8I5 C7 -0.806 -1.377 4.125 ETKDGv3 24
8I5 C8 -2.342 -1.371 4.163 ETKDGv3 25
8I5 C9 -2.925 -0.530 3.005 ETKDGv3 26
8I5 N19 6.442 -0.782 1.907 ETKDGv3 27
8I5 N2 -4.901 -2.051 -1.907 ETKDGv3 28
8I5 N23 5.601 1.109 -3.374 ETKDGv3 29
8I5 N6 -5.187 3.828 -1.201 ETKDGv3 30
8I5 N7 -0.296 -2.187 5.235 ETKDGv3 31
8I5 N9 -4.401 -0.547 3.023 ETKDGv3 32
8I5 O12 1.105 -1.834 2.739 ETKDGv3 33
8I5 O14 1.770 0.607 0.577 ETKDGv3 34
8I5 O16 -0.176 -1.161 -1.847 ETKDGv3 35
8I5 O17 -0.160 1.061 -3.553 ETKDGv3 36
8I5 O18 3.288 -0.522 -2.017 ETKDGv3 37
8I5 O20 7.946 0.796 -2.050 ETKDGv3 38
8I5 O21 7.629 1.581 0.596 ETKDGv3 39
8I5 O22 4.479 -0.045 -0.099 ETKDGv3 40
8I5 O3 -3.208 -0.572 -3.698 ETKDGv3 41
8I5 O4 -3.843 2.169 -2.999 ETKDGv3 42
8I5 O5 -5.059 0.323 -0.085 ETKDGv3 43
8I5 H1 -6.595 2.255 -1.230 ETKDGv3 44
8I5 H2 -5.940 2.670 0.391 ETKDGv3 45
8I5 H3 2.011 -1.353 -0.019 ETKDGv3 46
8I5 H4 1.851 1.025 -1.948 ETKDGv3 47
8I5 H5 1.434 -1.812 -2.922 ETKDGv3 48
8I5 H6 -2.741 -2.128 1.516 ETKDGv3 49
8I5 H7 -0.630 -2.965 2.647 ETKDGv3 50
8I5 H8 -0.553 0.284 -0.470 ETKDGv3 51
8I5 H9 -6.065 0.414 3.892 ETKDGv3 52
8I5 H10 -4.640 1.474 3.633 ETKDGv3 53
8I5 H11 -4.643 0.258 4.985 ETKDGv3 54
8I5 H12 -4.560 -1.531 0.559 ETKDGv3 55
8I5 H13 -0.514 -0.019 1.746 ETKDGv3 56
8I5 H14 -0.065 -0.761 -4.511 ETKDGv3 57
8I5 H15 1.476 0.181 -4.459 ETKDGv3 58
8I5 H16 3.954 1.406 -1.508 ETKDGv3 59
8I5 H17 5.641 -0.871 -2.648 ETKDGv3 60
8I5 H18 -2.890 -1.945 -1.326 ETKDGv3 61
8I5 H19 7.053 -0.594 -0.821 ETKDGv3 62
8I5 H20 6.262 2.364 -0.732 ETKDGv3 63
8I5 H21 4.596 1.833 0.757 ETKDGv3 64
8I5 H22 4.626 0.116 2.510 ETKDGv3 65
8I5 H23 6.064 1.178 2.599 ETKDGv3 66
8I5 H24 -2.395 0.281 -2.047 ETKDGv3 67
8I5 H25 -5.351 0.776 -2.752 ETKDGv3 68
8I5 H26 -3.663 1.848 -0.383 ETKDGv3 69
8I5 H27 -0.450 -0.330 4.264 ETKDGv3 70
8I5 H28 -2.719 -2.416 4.099 ETKDGv3 71
8I5 H29 -2.669 -0.949 5.137 ETKDGv3 72
8I5 H30 -2.557 0.517 3.107 ETKDGv3 73
8I5 H31 6.710 -1.048 2.882 ETKDGv3 74
8I5 H32 5.884 -1.580 1.525 ETKDGv3 75
8I5 H34 -4.613 -2.581 -2.761 ETKDGv3 76
8I5 H35 -5.697 -1.424 -2.164 ETKDGv3 77
8I5 H37 4.722 0.977 -3.927 ETKDGv3 78
8I5 H38 6.376 0.840 -4.022 ETKDGv3 79
8I5 H40 -5.975 4.514 -1.146 ETKDGv3 80
8I5 H41 -4.442 4.181 -0.557 ETKDGv3 81
8I5 H43 0.743 -2.075 5.288 ETKDGv3 82
8I5 H44 -0.495 -3.197 5.052 ETKDGv3 83
8I5 H46 -4.754 -1.492 3.302 ETKDGv3 84
8I5 H48 1.421 -2.542 2.119 ETKDGv3 85
8I5 H49 1.319 1.434 0.264 ETKDGv3 86
8I5 H50 -0.414 1.481 -4.415 ETKDGv3 87
8I5 H51 8.276 0.002 -2.548 ETKDGv3 88
8I5 H52 7.511 2.454 1.053 ETKDGv3 89
8I5 H53 -4.107 -0.705 -4.098 ETKDGv3 90
8I5 H54 -4.006 2.006 -3.964 ETKDGv3 91
#