data_827
#
_chem_comp.id 827
_chem_comp.name
"(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H38 N4 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-12-15
_chem_comp.pdbx_modified_date 2017-10-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 482.526
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5U19
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
827 C13 C1 C 0 1 N N S N N N -4.508 -18.085 17.724 -2.694 1.095 -0.266 C13 827 1
827 C15 C2 C 0 1 N N R N N N -2.295 -19.122 17.570 -4.652 -0.182 -0.804 C15 827 2
827 C20 C3 C 0 1 N N R N N N -2.717 -17.441 19.328 -4.827 1.610 0.925 C20 827 3
827 C22 C4 C 0 1 N N R N N N -4.168 -17.617 19.138 -3.535 2.210 0.361 C22 827 4
827 C24 C5 C 0 1 N N S N N N -4.759 -17.553 14.503 -1.494 -2.091 1.096 C24 827 5
827 C02 C6 C 0 1 N N R N N N -7.280 -10.804 16.128 4.641 1.422 -1.204 C02 827 6
827 C04 C7 C 0 1 N N N N N N -7.485 -12.281 16.570 3.281 0.925 -1.703 C04 827 7
827 C06 C8 C 0 1 N N R N N N -7.538 -13.045 14.296 3.458 -1.088 -0.411 C06 827 8
827 C11 C9 C 0 1 N N R N N N -5.168 -16.933 15.819 -1.321 -0.776 0.332 C11 827 9
827 O17 O1 O 0 1 N N N N N N -2.214 -21.501 17.612 -4.557 -1.943 -2.457 O17 827 10
827 C18 C10 C 0 1 N N S N N N -2.016 -18.755 19.037 -5.571 0.882 -0.199 C18 827 11
827 C27 C11 C 0 1 N N R N N N -5.921 -15.688 13.239 0.967 -2.496 0.957 C27 827 12
827 C09 C12 C 0 1 N N S N N N -5.359 -15.430 15.693 0.060 -0.191 0.632 C09 827 13
827 C31 C13 C 0 1 N N R N N N -6.808 -10.639 14.742 4.900 0.857 0.196 C31 827 14
827 C01 C14 C 0 1 N N N N N N -6.298 -10.247 17.198 4.637 2.951 -1.148 C01 827 15
827 C16 C15 C 0 1 N N N N N N -1.547 -20.335 17.146 -5.367 -0.873 -1.967 C16 827 16
827 O14 O2 O 0 1 N N N N N N -3.734 -19.336 17.370 -3.457 0.439 -1.281 O14 827 17
827 O12 O3 O 0 1 N N N N N N -4.145 -17.136 16.811 -2.330 0.149 0.742 O12 827 18
827 C26 C16 C 0 1 N N N N N N -5.749 -17.190 13.393 -0.414 -3.082 0.658 C26 827 19
827 C08 C17 C 0 1 N N S N N N -6.306 -15.028 14.559 1.140 -1.182 0.193 C08 827 20
827 O10 O4 O 0 1 N N N N N N -5.843 -14.956 16.937 0.223 1.037 -0.081 O10 827 21
827 O07 O5 O 0 1 N N N N N N -6.251 -13.592 14.428 2.431 -0.635 0.474 O07 827 22
827 C29 C18 C 0 1 N N R N N N -7.437 -11.587 13.774 4.825 -0.672 0.139 C29 827 23
827 O05 O6 O 0 1 N N N N N N -8.217 -13.068 15.573 3.268 -0.504 -1.701 O05 827 24
827 O03 O7 O 0 1 N N N N N N -8.517 -10.156 16.293 5.666 0.979 -2.096 O03 827 25
827 N32 N1 N 0 1 N N N N N N -7.191 -9.313 14.156 6.234 1.269 0.652 N32 827 26
827 C33 C19 C 0 1 N N N N N N -6.321 -8.230 14.636 6.307 1.285 2.119 C33 827 27
827 O30 O8 O 0 1 N N N N N N -6.694 -11.560 12.575 4.994 -1.207 1.454 O30 827 28
827 N28 N2 N 0 1 N N N N N N -6.939 -15.448 12.207 2.004 -3.448 0.536 N28 827 29
827 N25 N3 N 0 1 N N N N N N -4.707 -18.986 14.644 -2.821 -2.653 0.808 N25 827 30
827 N23 N4 N 0 1 N N N N N N -4.883 -16.385 19.442 -2.776 2.847 1.446 N23 827 31
827 O21 O9 O 0 1 N N N N N N -2.444 -16.984 20.688 -5.651 2.654 1.447 O21 827 32
827 O19 O10 O 0 1 N N N N N N -0.598 -18.712 19.335 -6.742 0.256 0.331 O19 827 33
827 H1 H1 H 0 1 N N N N N N -5.585 -18.300 17.669 -1.794 1.522 -0.706 H1 827 34
827 H2 H2 H 0 1 N N N N N N -1.973 -18.277 16.944 -4.400 -0.920 -0.043 H2 827 35
827 H3 H3 H 0 1 N N N N N N -2.352 -16.688 18.614 -4.585 0.904 1.720 H3 827 36
827 H4 H4 H 0 1 N N N N N N -4.511 -18.396 19.834 -3.780 2.953 -0.398 H4 827 37
827 H5 H5 H 0 1 N N N N N N -3.766 -17.171 14.225 -1.403 -1.904 2.166 H5 827 38
827 H6 H6 H 0 1 N N N N N N -8.051 -12.292 17.513 2.495 1.296 -1.045 H6 827 39
827 H7 H7 H 0 1 N N N N N N -6.499 -12.742 16.729 3.110 1.289 -2.716 H7 827 40
827 H8 H8 H 0 1 N N N N N N -8.119 -13.627 13.565 3.414 -2.174 -0.493 H8 827 41
827 H9 H9 H 0 1 N N N N N N -6.113 -17.387 16.152 -1.412 -0.963 -0.738 H9 827 42
827 H10 H10 H 0 1 N N N N N N -1.732 -22.273 17.338 -4.949 -2.427 -3.196 H10 827 43
827 H11 H11 H 0 1 N N N N N N -2.482 -19.529 19.665 -5.857 1.598 -0.970 H11 827 44
827 H12 H12 H 0 1 N N N N N N -4.964 -15.261 12.905 1.058 -2.310 2.027 H12 827 45
827 H13 H13 H 0 1 N N N N N N -4.377 -14.979 15.488 0.152 -0.004 1.702 H13 827 46
827 H14 H14 H 0 1 N N N N N N -5.714 -10.751 14.706 4.146 1.234 0.886 H14 827 47
827 H15 H15 H 0 1 N N N N N N -6.719 -10.407 18.202 4.449 3.351 -2.144 H15 827 48
827 H16 H16 H 0 1 N N N N N N -5.333 -10.770 17.118 3.854 3.287 -0.468 H16 827 49
827 H17 H17 H 0 1 N N N N N N -6.146 -9.170 17.031 5.604 3.303 -0.791 H17 827 50
827 H18 H18 H 0 1 N N N N N N -1.488 -20.362 16.048 -6.323 -1.269 -1.622 H18 827 51
827 H19 H19 H 0 1 N N N N N N -0.531 -20.303 17.567 -5.541 -0.153 -2.766 H19 827 52
827 H20 H20 H 0 1 N N N N N N -6.726 -17.635 13.632 -0.538 -4.018 1.202 H20 827 53
827 H21 H21 H 0 1 N N N N N N -5.381 -17.603 12.442 -0.506 -3.269 -0.412 H21 827 54
827 H22 H22 H 0 1 N N N N N N -7.327 -15.340 14.826 1.049 -1.369 -0.877 H22 827 55
827 H23 H23 H 0 1 N N N N N N -5.245 -15.213 17.629 1.033 1.515 0.139 H23 827 56
827 H24 H24 H 0 1 N N N N N N -8.461 -11.239 13.572 5.611 -1.051 -0.513 H24 827 57
827 H25 H25 H 0 1 N N N N N N -8.816 -10.266 17.188 5.562 1.296 -3.003 H25 827 58
827 H26 H26 H 0 1 N N N N N N -8.135 -9.107 14.412 6.487 2.167 0.268 H26 827 59
827 H28 H28 H 0 1 N N N N N N -6.636 -7.278 14.183 5.572 1.987 2.512 H28 827 60
827 H29 H29 H 0 1 N N N N N N -6.396 -8.157 15.731 6.099 0.286 2.504 H29 827 61
827 H30 H30 H 0 1 N N N N N N -5.280 -8.444 14.353 7.306 1.593 2.430 H30 827 62
827 H31 H31 H 0 1 N N N N N N -6.635 -10.666 12.259 4.952 -2.172 1.494 H31 827 63
827 H32 H32 H 0 1 N N N N N N -7.069 -14.464 12.089 1.911 -4.325 1.027 H32 827 64
827 H33 H33 H 0 1 N N N N N N -6.638 -15.851 11.342 1.982 -3.588 -0.463 H33 827 65
827 H35 H35 H 0 1 N N N N N N -4.061 -19.227 15.368 -2.919 -3.572 1.212 H35 827 66
827 H36 H36 H 0 1 N N N N N N -5.616 -19.331 14.879 -3.552 -2.036 1.129 H36 827 67
827 H38 H38 H 0 1 N N N N N N -4.655 -16.086 20.369 -1.916 3.246 1.099 H38 827 68
827 H39 H39 H 0 1 N N N N N N -4.618 -15.676 18.789 -3.334 3.543 1.917 H39 827 69
827 H41 H41 H 0 1 N N N N N N -2.894 -16.162 20.843 -6.489 2.345 1.818 H41 827 70
827 H42 H42 H 0 1 N N N N N N -0.473 -18.482 20.248 -7.261 -0.228 -0.326 H42 827 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
827 N28 C27 SING N N 1
827 O30 C29 SING N N 2
827 C27 C26 SING N N 3
827 C27 C08 SING N N 4
827 C26 C24 SING N N 5
827 C29 C06 SING N N 6
827 C29 C31 SING N N 7
827 N32 C33 SING N N 8
827 N32 C31 SING N N 9
827 C06 O07 SING N N 10
827 C06 O05 SING N N 11
827 O07 C08 SING N N 12
827 C24 N25 SING N N 13
827 C24 C11 SING N N 14
827 C08 C09 SING N N 15
827 C31 C02 SING N N 16
827 O05 C04 SING N N 17
827 C09 C11 SING N N 18
827 C09 O10 SING N N 19
827 C11 O12 SING N N 20
827 C02 O03 SING N N 21
827 C02 C04 SING N N 22
827 C02 C01 SING N N 23
827 O12 C13 SING N N 24
827 C16 C15 SING N N 25
827 C16 O17 SING N N 26
827 O14 C15 SING N N 27
827 O14 C13 SING N N 28
827 C15 C18 SING N N 29
827 C13 C22 SING N N 30
827 C18 C20 SING N N 31
827 C18 O19 SING N N 32
827 C22 C20 SING N N 33
827 C22 N23 SING N N 34
827 C20 O21 SING N N 35
827 C13 H1 SING N N 36
827 C15 H2 SING N N 37
827 C20 H3 SING N N 38
827 C22 H4 SING N N 39
827 C24 H5 SING N N 40
827 C04 H6 SING N N 41
827 C04 H7 SING N N 42
827 C06 H8 SING N N 43
827 C11 H9 SING N N 44
827 O17 H10 SING N N 45
827 C18 H11 SING N N 46
827 C27 H12 SING N N 47
827 C09 H13 SING N N 48
827 C31 H14 SING N N 49
827 C01 H15 SING N N 50
827 C01 H16 SING N N 51
827 C01 H17 SING N N 52
827 C16 H18 SING N N 53
827 C16 H19 SING N N 54
827 C26 H20 SING N N 55
827 C26 H21 SING N N 56
827 C08 H22 SING N N 57
827 O10 H23 SING N N 58
827 C29 H24 SING N N 59
827 O03 H25 SING N N 60
827 N32 H26 SING N N 61
827 C33 H28 SING N N 62
827 C33 H29 SING N N 63
827 C33 H30 SING N N 64
827 O30 H31 SING N N 65
827 N28 H32 SING N N 66
827 N28 H33 SING N N 67
827 N25 H35 SING N N 68
827 N25 H36 SING N N 69
827 N23 H38 SING N N 70
827 N23 H39 SING N N 71
827 O21 H41 SING N N 72
827 O19 H42 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
827 SMILES ACDLabs 12.01 C1(C(C(O)C(C(CO)O1)O)N)OC2C(N)CC(C(C2O)OC3OCC(O)(C)C(C3O)NC)N
827 InChI InChI 1.03 InChI=1S/C19H38N4O10/c1-19(29)5-30-18(13(28)16(19)23-2)33-15-7(21)3-6(20)14(12(15)27)32-17-9(22)11(26)10(25)8(4-24)31-17/h6-18,23-29H,3-5,20-22H2,1-2H3/t6-,7+,8+,9+,10+,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1
827 InChIKey InChI 1.03 HFLKNINDVFJPQT-ZFAMMYHGSA-N
827 SMILES_CANONICAL CACTVS 3.385 CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O
827 SMILES CACTVS 3.385 CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3N)[CH]2O
827 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)N)N)N)O
827 SMILES "OpenEye OEToolkits" 2.0.6 CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CO)O)O)N)N)N)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
827 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside"
827 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-4,6-bis(azanyl)-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
827 'Create component' 2016-12-15 RCSB
827 'Modify value order' 2017-08-18 RCSB
827 'Initial release' 2017-11-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
827 C13 C 9.244 -3.530 1
827 C15 C 6.646 -3.530 2
827 C20 C 7.945 -5.779 3
827 C22 C 9.244 -5.029 4
827 C24 C 11.842 -0.529 5
827 C02 C 6.406 5.949 6
827 C04 C 7.883 5.689 7
827 C06 C 7.432 3.130 8
827 C11 C 10.543 -1.280 9
827 O17 O 5.347 -1.280 10
827 C18 C 6.646 -5.029 11
827 C27 C 10.543 1.720 12
827 C09 C 9.244 -0.529 13
827 C31 C 5.441 4.800 14
827 C01 C 5.256 6.913 15
827 C16 C 5.347 -2.780 16
827 O14 O 7.945 -2.780 17
827 O12 O 10.543 -2.780 18
827 C26 C 11.842 0.971 19
827 C08 C 9.244 0.971 20
827 O10 O 7.945 -1.280 21
827 O07 O 7.945 1.720 22
827 C29 C 5.954 3.391 23
827 O05 O 8.396 4.279 24
827 O03 O 6.666 7.426 25
827 N32 N 3.964 5.061 26
827 C33 C 3.000 3.912 27
827 O30 O 4.990 2.241 28
827 N28 N 11.056 3.130 29
827 N25 N 13.141 -1.280 30
827 N23 N 10.543 -5.779 31
827 O21 O 7.945 -7.279 32
827 O19 O 5.347 -5.779 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
827 C27 N28 SINGLE BEGINDASH 1
827 C29 O30 SINGLE BEGINDASH 2
827 C27 C26 SINGLE NONE 3
827 C27 C08 SINGLE NONE 4
827 C26 C24 SINGLE NONE 5
827 C29 C06 SINGLE NONE 6
827 C29 C31 SINGLE NONE 7
827 N32 C33 SINGLE NONE 8
827 C31 N32 SINGLE BEGINWEDGE 9
827 C06 O07 SINGLE BEGINDASH 10
827 C06 O05 SINGLE NONE 11
827 C08 O07 SINGLE BEGINWEDGE 12
827 C24 N25 SINGLE BEGINDASH 13
827 C24 C11 SINGLE NONE 14
827 C08 C09 SINGLE NONE 15
827 C31 C02 SINGLE NONE 16
827 O05 C04 SINGLE NONE 17
827 C09 C11 SINGLE NONE 18
827 C09 O10 SINGLE BEGINDASH 19
827 C11 O12 SINGLE BEGINWEDGE 20
827 C02 O03 SINGLE NONE 21
827 C02 C04 SINGLE NONE 22
827 C02 C01 SINGLE BEGINDASH 23
827 C13 O12 SINGLE BEGINDASH 24
827 C15 C16 SINGLE BEGINWEDGE 25
827 C16 O17 SINGLE NONE 26
827 O14 C15 SINGLE NONE 27
827 O14 C13 SINGLE NONE 28
827 C15 C18 SINGLE NONE 29
827 C13 C22 SINGLE NONE 30
827 C18 C20 SINGLE NONE 31
827 C18 O19 SINGLE BEGINDASH 32
827 C22 C20 SINGLE NONE 33
827 C22 N23 SINGLE BEGINDASH 34
827 C20 O21 SINGLE BEGINWEDGE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
827 MurckoScaffold S1 scaffold 'C1CC[C@@H](O[C@@H]2CCC[C@H](O[C@@H]3CCCCO3)C2)OC1' InChI=1S/C16H28O4/c1-3-10-17-15(8-1)19-13-6-5-7-14(12-13)20-16-9-2-4-11-18-16/h13-16H,1-12H2/t13-,14+,15-,16-/m1/s1 UOYDWHSPHHJHEM-QKPAOTATSA-N
827 cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
827 pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
827 C13 S1 1
827 C15 S1 1
827 C20 S1 1
827 C22 S1 1
827 C24 S1 1
827 C02 S1 1
827 C04 S1 1
827 C06 S1 1
827 C11 S1 1
827 C18 S1 1
827 C27 S1 1
827 C09 S1 1
827 C31 S1 1
827 O14 S1 1
827 O12 S1 1
827 C26 S1 1
827 C08 S1 1
827 O07 S1 1
827 C29 S1 1
827 O05 S1 1
827 C24 F1 1
827 C26 F1 1
827 C27 F1 1
827 C08 F1 1
827 C09 F1 1
827 C11 F1 1
827 C02 F2 1
827 C04 F2 1
827 O05 F2 1
827 C06 F2 1
827 C29 F2 1
827 C31 F2 1
827 O07 F2 1
827 C18 F2 2
827 C15 F2 2
827 O14 F2 2
827 C13 F2 2
827 C22 F2 2
827 C20 F2 2
827 O12 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 827
_pdbe_chem_comp_rdkit_properties.exactmw 482.259
_pdbe_chem_comp_rdkit_properties.amw 482.531
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 13
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 14
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 245.395
_pdbe_chem_comp_rdkit_properties.tpsa 248.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP -6.002
_pdbe_chem_comp_rdkit_properties.CrippenMR 111.275
_pdbe_chem_comp_rdkit_properties.chi0v 15.371
_pdbe_chem_comp_rdkit_properties.chi1v 7.976
_pdbe_chem_comp_rdkit_properties.chi2v 3.710
_pdbe_chem_comp_rdkit_properties.chi3v 3.710
_pdbe_chem_comp_rdkit_properties.chi4v 2.212
_pdbe_chem_comp_rdkit_properties.chi0n 53.371
_pdbe_chem_comp_rdkit_properties.chi1n 26.056
_pdbe_chem_comp_rdkit_properties.chi2n 3.710
_pdbe_chem_comp_rdkit_properties.chi3n 3.710
_pdbe_chem_comp_rdkit_properties.chi4n 2.212
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.560
_pdbe_chem_comp_rdkit_properties.kappa1 6.111
_pdbe_chem_comp_rdkit_properties.kappa2 10.594
_pdbe_chem_comp_rdkit_properties.kappa3 5.339
_pdbe_chem_comp_rdkit_properties.Phi 1.962
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
827 UniChem 'KEGG LIGAND' C17702
827 UniChem ChEBI 81280
827 UniChem SureChEMBL SCHEMBL690810
827 UniChem NMRShiftDB 70115521
827 UniChem ACTor 36889-17-5
827 UniChem BRENDA 247909
827 UniChem Nikkaji J87.127C
827 UniChem PubChem 15574862
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
827 C13 -3.573 0.474 1.309 ETKDGv3 1
827 C15 -5.346 -0.479 0.108 ETKDGv3 2
827 C20 -4.928 -1.364 2.476 ETKDGv3 3
827 C22 -3.508 -0.817 2.190 ETKDGv3 4
827 C24 -1.464 2.625 0.497 ETKDGv3 5
827 C02 5.106 -1.399 0.474 ETKDGv3 6
827 C04 4.529 -0.316 1.424 ETKDGv3 7
827 C06 3.280 0.839 -0.187 ETKDGv3 8
827 C11 -1.379 1.074 0.685 ETKDGv3 9
827 O17 -6.980 -1.185 -1.518 ETKDGv3 10
827 C18 -5.743 -1.541 1.174 ETKDGv3 11
827 C27 0.628 2.640 -1.026 ETKDGv3 12
827 C09 -0.223 0.431 -0.128 ETKDGv3 13
827 C31 4.808 -1.037 -1.035 ETKDGv3 14
827 C01 4.447 -2.748 0.831 ETKDGv3 15
827 C16 -6.540 -0.085 -0.770 ETKDGv3 16
827 O14 -4.857 0.689 0.740 ETKDGv3 17
827 O12 -2.596 0.468 0.274 ETKDGv3 18
827 C26 -0.852 3.077 -0.844 ETKDGv3 19
827 C08 0.991 1.371 -0.213 ETKDGv3 20
827 O10 0.169 -0.775 0.478 ETKDGv3 21
827 O07 2.048 0.686 -0.870 ETKDGv3 22
827 C29 4.441 0.463 -1.160 ETKDGv3 23
827 O05 3.237 0.049 0.997 ETKDGv3 24
827 O03 6.490 -1.517 0.708 ETKDGv3 25
827 N32 5.963 -1.344 -1.913 ETKDGv3 26
827 C33 6.125 -2.782 -2.148 ETKDGv3 27
827 O30 4.085 0.769 -2.485 ETKDGv3 28
827 N28 1.555 3.726 -0.696 ETKDGv3 29
827 N25 -0.810 3.314 1.613 ETKDGv3 30
827 N23 -2.645 -1.843 1.593 ETKDGv3 31
827 O21 -5.609 -0.471 3.322 ETKDGv3 32
827 O19 -5.527 -2.834 0.664 ETKDGv3 33
827 H1 -3.426 1.338 2.001 ETKDGv3 34
827 H2 -4.572 -0.897 -0.578 ETKDGv3 35
827 H3 -4.852 -2.353 2.989 ETKDGv3 36
827 H4 -3.047 -0.538 3.165 ETKDGv3 37
827 H5 -2.534 2.935 0.484 ETKDGv3 38
827 H6 5.192 0.578 1.481 ETKDGv3 39
827 H7 4.465 -0.705 2.463 ETKDGv3 40
827 H8 3.436 1.907 0.097 ETKDGv3 41
827 H9 -1.169 0.847 1.759 ETKDGv3 42
827 H10 -7.754 -0.864 -2.049 ETKDGv3 43
827 H11 -6.822 -1.430 1.443 ETKDGv3 44
827 H12 0.763 2.401 -2.106 ETKDGv3 45
827 H13 -0.570 0.233 -1.172 ETKDGv3 46
827 H14 3.911 -1.598 -1.390 ETKDGv3 47
827 H15 4.804 -3.563 0.172 ETKDGv3 48
827 H16 4.691 -3.033 1.878 ETKDGv3 49
827 H17 3.342 -2.684 0.734 ETKDGv3 50
827 H18 -6.224 0.726 -1.464 ETKDGv3 51
827 H19 -7.368 0.302 -0.135 ETKDGv3 52
827 H20 -1.458 2.628 -1.662 ETKDGv3 53
827 H21 -0.954 4.179 -0.956 ETKDGv3 54
827 H22 1.244 1.663 0.836 ETKDGv3 55
827 H23 -0.409 -1.489 0.104 ETKDGv3 56
827 H24 5.347 1.054 -0.886 ETKDGv3 57
827 H25 6.914 -0.652 0.468 ETKDGv3 58
827 H26 5.803 -0.916 -2.855 ETKDGv3 59
827 H28 5.159 -3.264 -2.414 ETKDGv3 60
827 H29 6.832 -2.942 -2.990 ETKDGv3 61
827 H30 6.569 -3.270 -1.257 ETKDGv3 62
827 H31 4.086 1.759 -2.559 ETKDGv3 63
827 H32 1.360 4.073 0.270 ETKDGv3 64
827 H33 1.390 4.522 -1.355 ETKDGv3 65
827 H35 -0.931 4.345 1.483 ETKDGv3 66
827 H36 -1.325 3.079 2.492 ETKDGv3 67
827 H38 -2.584 -2.659 2.244 ETKDGv3 68
827 H39 -3.051 -2.185 0.694 ETKDGv3 69
827 H41 -5.245 -0.603 4.237 ETKDGv3 70
827 H42 -6.334 -3.082 0.142 ETKDGv3 71
#