data_80I
#
_chem_comp.id 80I
_chem_comp.name
"[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H33 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-09
_chem_comp.pdbx_modified_date 2022-08-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 552.514
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 80I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7VVP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
80I C10 C1 C 0 1 Y N N N N N 23.826 8.750 -4.546 8.716 -1.231 -1.297 C10 80I 1
80I C13 C2 C 0 1 N N N N N N 24.955 10.006 -2.367 10.332 0.101 0.410 C13 80I 2
80I C15 C3 C 0 1 N N S N N N 16.403 10.743 -1.355 0.954 1.079 0.733 C15 80I 3
80I C20 C4 C 0 1 N N S N N N 14.031 10.848 -5.754 -3.814 -2.448 1.147 C20 80I 4
80I C21 C5 C 0 1 N N N N N N 13.424 10.059 -6.724 -3.351 -3.177 -0.096 C21 80I 5
80I C24 C6 C 0 1 N N N N N N 14.807 12.054 -6.541 -4.010 -3.568 2.195 C24 80I 6
80I C26 C7 C 0 1 N N N N N N 12.778 13.330 -3.105 -3.842 0.504 0.566 C26 80I 7
80I C02 C8 C 0 1 N N N N N N 17.952 9.521 -2.946 3.376 0.830 0.653 C02 80I 8
80I C03 C9 C 0 1 Y N N N N N 19.377 9.238 -3.445 4.594 0.246 0.075 C03 80I 9
80I C05 C10 C 0 1 Y N N N N N 20.552 9.730 -2.878 5.864 0.502 0.487 C05 80I 10
80I C06 C11 C 0 1 Y N N N N N 21.617 9.234 -3.665 6.741 -0.254 -0.324 C06 80I 11
80I C07 C12 C 0 1 Y N N N N N 21.041 8.471 -4.670 5.944 -0.972 -1.236 C07 80I 12
80I C08 C13 C 0 1 Y N N N N N 21.859 7.835 -5.631 6.551 -1.818 -2.160 C08 80I 13
80I C09 C14 C 0 1 Y N N N N N 23.246 7.981 -5.560 7.923 -1.939 -2.189 C09 80I 14
80I C11 C15 C 0 1 Y N N N N N 23.019 9.379 -3.596 8.140 -0.393 -0.363 C11 80I 15
80I C16 C16 C 0 1 N N N N N N 15.711 11.655 -2.369 -0.213 0.160 0.479 C16 80I 16
80I C18 C17 C 0 1 N N S N N N 13.735 12.328 -3.779 -2.596 -0.342 0.578 C18 80I 17
80I C19 C18 C 0 1 N N N N N N 13.004 11.474 -4.814 -2.746 -1.457 1.615 C19 80I 18
80I C23 C19 C 0 1 N N N N N N 14.730 11.774 -7.867 -3.057 -4.663 1.668 C23 80I 19
80I C27 C20 C 0 1 N N N N N N 13.249 14.060 -1.842 -4.939 0.217 -0.427 C27 80I 20
80I C35 C21 C 0 1 N N N N N N 16.503 11.435 0.002 0.683 2.438 0.086 C35 80I 21
80I C36 C22 C 0 1 N N N N N N 17.207 10.588 1.063 1.808 3.409 0.448 C36 80I 22
80I C37 C23 C 0 1 N N N N N N 17.287 11.373 2.370 1.603 4.729 -0.299 C37 80I 23
80I C38 C24 C 0 1 N N N N N N 16.519 9.237 1.280 1.792 3.669 1.956 C38 80I 24
80I N04 N1 N 0 1 Y N N N N N 19.704 8.500 -4.496 4.633 -0.652 -0.976 N04 80I 25
80I N14 N2 N 0 1 N N N N N N 17.742 10.449 -1.842 2.168 0.497 0.157 N14 80I 26
80I N17 N3 N 0 1 N N N N N N 14.338 11.425 -2.802 -1.442 0.493 0.923 N17 80I 27
80I N22 N4 N 0 1 N N N N N N 13.786 10.523 -8.027 -2.937 -4.415 0.222 N22 80I 28
80I O01 O1 O 0 1 N N N N N N 17.017 9.015 -3.479 3.458 1.613 1.581 O01 80I 29
80I O12 O2 O 0 1 N N N N N N 23.575 10.162 -2.571 8.919 0.293 0.511 O12 80I 30
80I O25 O3 O 0 1 N N N N N N 12.722 9.126 -6.515 -3.354 -2.711 -1.216 O25 80I 31
80I O28 O4 O 0 1 N N N N N N 14.222 14.979 -2.222 -6.021 1.127 -0.219 O28 80I 32
80I O30 O5 O 0 1 N N N N N N 13.317 17.339 -1.812 -7.010 1.493 -2.627 O30 80I 33
80I O31 O6 O 0 1 N N N N N N 12.522 16.108 -3.817 -7.964 -0.244 -1.064 O31 80I 34
80I O32 O7 O 0 1 N N N N N N 14.838 16.963 -3.765 -8.413 2.177 -0.511 O32 80I 35
80I O33 O8 O 0 1 N N N N N N 11.662 13.505 -3.519 -3.963 1.413 1.353 O33 80I 36
80I O34 O9 O 0 1 N N N N N N 16.306 12.575 -2.811 -0.047 -0.879 -0.124 O34 80I 37
80I P29 P1 P 0 1 N N N N N N 13.714 16.384 -2.923 -7.365 1.109 -1.104 P29 80I 38
80I H1 H1 H 0 1 N N N N N N 24.900 8.857 -4.498 9.790 -1.340 -1.330 H1 80I 39
80I H2 H2 H 0 1 N N N N N N 25.281 10.662 -1.546 10.568 -0.951 0.571 H2 80I 40
80I H3 H3 H 0 1 N N N N N N 25.171 8.959 -2.107 10.670 0.402 -0.581 H3 80I 41
80I H4 H4 H 0 1 N N N N N N 25.494 10.274 -3.287 10.835 0.706 1.165 H4 80I 42
80I H5 H5 H 0 1 N N N N N N 15.824 9.814 -1.248 1.087 1.208 1.807 H5 80I 43
80I H6 H6 H 0 1 N N N N N N 14.772 10.281 -5.171 -4.755 -1.933 0.958 H6 80I 44
80I H7 H7 H 0 1 N N N N N N 15.859 12.097 -6.224 -3.707 -3.231 3.187 H7 80I 45
80I H8 H8 H 0 1 N N N N N N 14.321 13.018 -6.329 -5.042 -3.918 2.203 H8 80I 46
80I H9 H9 H 0 1 N N N N N N 20.633 10.365 -2.008 6.151 1.165 1.290 H9 80I 47
80I H10 H10 H 0 1 N N N N N N 21.414 7.240 -6.415 5.946 -2.375 -2.860 H10 80I 48
80I H11 H11 H 0 1 N N N N N N 23.875 7.497 -6.293 8.386 -2.591 -2.915 H11 80I 49
80I H12 H12 H 0 1 N N N N N N 14.527 12.895 -4.290 -2.445 -0.781 -0.408 H12 80I 50
80I H13 H13 H 0 1 N N N N N N 12.312 12.105 -5.391 -3.045 -1.026 2.571 H13 80I 51
80I H14 H14 H 0 1 N N N N N N 12.438 10.680 -4.304 -1.795 -1.976 1.731 H14 80I 52
80I H15 H15 H 0 1 N N N N N N 15.730 11.544 -8.262 -2.082 -4.578 2.148 H15 80I 53
80I H16 H16 H 0 1 N N N N N N 12.402 14.583 -1.374 -4.553 0.337 -1.439 H16 80I 54
80I H17 H17 H 0 1 N N N N N N 13.674 13.338 -1.129 -5.293 -0.805 -0.292 H17 80I 55
80I H18 H18 H 0 1 N N N N N N 17.064 12.373 -0.125 0.637 2.323 -0.997 H18 80I 56
80I H19 H19 H 0 1 N N N N N N 15.486 11.661 0.354 -0.267 2.831 0.449 H19 80I 57
80I H20 H20 H 0 1 N N N N N N 18.234 10.395 0.718 2.767 2.976 0.164 H20 80I 58
80I H21 H21 H 0 1 N N N N N N 17.793 10.764 3.134 0.644 5.162 -0.014 H21 80I 59
80I H22 H22 H 0 1 N N N N N N 17.854 12.301 2.206 2.405 5.421 -0.040 H22 80I 60
80I H23 H23 H 0 1 N N N N N N 16.271 11.620 2.712 1.615 4.544 -1.373 H23 80I 61
80I H24 H24 H 0 1 N N N N N N 17.062 8.668 2.049 1.938 2.729 2.488 H24 80I 62
80I H25 H25 H 0 1 N N N N N N 15.482 9.402 1.609 2.594 4.361 2.214 H25 80I 63
80I H26 H26 H 0 1 N N N N N N 16.519 8.670 0.337 0.833 4.102 2.240 H26 80I 64
80I H27 H27 H 0 1 N N N N N N 19.046 8.027 -5.082 3.861 -0.999 -1.451 H27 80I 65
80I H28 H28 H 0 1 N N N N N N 18.530 10.890 -1.413 2.103 -0.128 -0.582 H28 80I 66
80I H29 H29 H 0 1 N N N N N N 13.814 10.657 -2.434 -1.562 1.284 1.470 H29 80I 67
80I H30 H30 H 0 1 N N N N N N 12.400 17.569 -1.904 -6.613 2.369 -2.729 H30 80I 68
80I H31 H31 H 0 1 N N N N N N 14.555 17.029 -4.670 -9.248 2.220 -0.997 H31 80I 69
80I H32 H32 H 0 1 N N N N N N 13.490 10.121 -8.894 -2.603 -5.063 -0.419 H32 80I 70
80I H33 H33 H 0 1 N N N N N N 14.311 12.634 -8.410 -3.481 -5.651 1.850 H33 80I 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
80I N22 C23 SING N N 1
80I N22 C21 SING N N 2
80I C23 C24 SING N N 3
80I C21 O25 DOUB N N 4
80I C21 C20 SING N N 5
80I C24 C20 SING N N 6
80I C20 C19 SING N N 7
80I C08 C09 DOUB Y N 8
80I C08 C07 SING Y N 9
80I C09 C10 SING Y N 10
80I C19 C18 SING N N 11
80I C07 N04 SING Y N 12
80I C07 C06 DOUB Y N 13
80I C10 C11 DOUB Y N 14
80I N04 C03 SING Y N 15
80I O31 P29 DOUB N N 16
80I C18 C26 SING N N 17
80I C18 N17 SING N N 18
80I O32 P29 SING N N 19
80I C06 C11 SING Y N 20
80I C06 C05 SING Y N 21
80I C11 O12 SING N N 22
80I O33 C26 DOUB N N 23
80I O01 C02 DOUB N N 24
80I C03 C02 SING N N 25
80I C03 C05 DOUB Y N 26
80I C26 C27 SING N N 27
80I C02 N14 SING N N 28
80I P29 O28 SING N N 29
80I P29 O30 SING N N 30
80I O34 C16 DOUB N N 31
80I N17 C16 SING N N 32
80I O12 C13 SING N N 33
80I C16 C15 SING N N 34
80I O28 C27 SING N N 35
80I N14 C15 SING N N 36
80I C15 C35 SING N N 37
80I C35 C36 SING N N 38
80I C36 C38 SING N N 39
80I C36 C37 SING N N 40
80I C10 H1 SING N N 41
80I C13 H2 SING N N 42
80I C13 H3 SING N N 43
80I C13 H4 SING N N 44
80I C15 H5 SING N N 45
80I C20 H6 SING N N 46
80I C24 H7 SING N N 47
80I C24 H8 SING N N 48
80I C05 H9 SING N N 49
80I C08 H10 SING N N 50
80I C09 H11 SING N N 51
80I C18 H12 SING N N 52
80I C19 H13 SING N N 53
80I C19 H14 SING N N 54
80I C23 H15 SING N N 55
80I C27 H16 SING N N 56
80I C27 H17 SING N N 57
80I C35 H18 SING N N 58
80I C35 H19 SING N N 59
80I C36 H20 SING N N 60
80I C37 H21 SING N N 61
80I C37 H22 SING N N 62
80I C37 H23 SING N N 63
80I C38 H24 SING N N 64
80I C38 H25 SING N N 65
80I C38 H26 SING N N 66
80I N04 H27 SING N N 67
80I N14 H28 SING N N 68
80I N17 H29 SING N N 69
80I O30 H30 SING N N 70
80I O32 H31 SING N N 71
80I N22 H32 SING N N 72
80I C23 H33 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
80I InChI InChI 1.03 InChI=1S/C24H33N4O9P/c1-13(2)9-18(28-24(32)19-11-15-16(26-19)5-4-6-21(15)36-3)23(31)27-17(10-14-7-8-25-22(14)30)20(29)12-37-38(33,34)35/h4-6,11,13-14,17-18,26H,7-10,12H2,1-3H3,(H,25,30)(H,27,31)(H,28,32)(H2,33,34,35)/t14-,17-,18-/m0/s1
80I InChIKey InChI 1.03 FQKALOFOWPDTED-WBAXXEDZSA-N
80I SMILES_CANONICAL CACTVS 3.385 COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C(=O)CO[P](O)(O)=O
80I SMILES CACTVS 3.385 COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C(=O)CO[P](O)(O)=O
80I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(=O)COP(=O)(O)O)NC(=O)c2cc3c([nH]2)cccc3OC
80I SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CC(C(=O)NC(CC1CCNC1=O)C(=O)COP(=O)(O)O)NC(=O)c2cc3c([nH]2)cccc3OC
#
_pdbx_chem_comp_identifier.comp_id 80I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
80I 'Create component' 2021-11-09 PDBJ
80I 'Initial release' 2022-08-24 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 80I
_pdbe_chem_comp_drugbank_details.drugbank_id DB16514
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Lufotrelvir
_pdbe_chem_comp_drugbank_details.description
'PF-07304814 is a small molecule prodrug that targets the 3CL<sup>pro</sup> protease (M<sup>pro)</sup>, which is used by viruses like SARS-CoV-2 to assemble and multiply[L31718]. Once administered through intravenous infusion, the compound is cleaved into PF-00835231 to exert its anti-viral effects[L31718]. PF-07304814, developed by Pfizer, was first identified during the SARS outbreak in 2002-2003; it was subsequently shelved as the outbreak was controlled[L31728]. Now, it is being tested regarding the novel SARS-CoV-2 virus, including studies in conjunction with [Remdesivir] to treat COVID-19 infection; in vitro data showed synergistic effects on articles published on preprint servers[L31733, L31125]. Phase 1b studies are also exploring the safety and tolerability of PF-07304814 in COVID-19 patients who are hospitalized (NCT04535167).'
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The structure of PF-07304814 contains a phosphate group, allowing the compound to be soluble and then subsequently cleaved in tissue by alkaline phosphatase[L31718]. This step allows for the release of PF-00835231, which is the compound that exerts anti-viral activity against the 3CL protease of SARS-CoV-2[L31718]. The active compound, PF-00835231, was shown to have potent and broad-spectrum inhibitory activity against numerous coronavirus 3CL proteases[L31125].'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
80I Lufotrelvir ChEMBL 'International Nonproprietary Name'
80I Lufotrelvir ChEMBL 'Other name'
80I Lufotrelvir ChEMBL 'United States Accepted Names'
80I Pf-07304814 ChEMBL 'Other name'
80I PF-07304814 ChEMBL 'Research Code'
80I PF07304814 ChEMBL 'Research Code'
80I Lufotrelvir DrugBank ?
#
_pdbe_chem_comp_drugbank_targets.comp_id 80I
_pdbe_chem_comp_drugbank_targets.drugbank_id DB16514
_pdbe_chem_comp_drugbank_targets.name 'Replicase polyprotein 1ab'
_pdbe_chem_comp_drugbank_targets.organism SARS-CoV-2
_pdbe_chem_comp_drugbank_targets.uniprot_id P0DTD1
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
80I C10 C 3.000 -3.084 1
80I C13 C 3.000 -0.084 2
80I C15 C 11.643 -2.535 3
80I C20 C 14.643 2.661 4
80I C21 C 16.135 2.818 5
80I C24 C 14.033 4.031 6
80I C26 C 11.643 2.661 7
80I C02 C 9.393 -3.834 8
80I C03 C 7.893 -3.834 9
80I C05 C 7.018 -2.627 10
80I C06 C 5.598 -3.084 11
80I C07 C 5.598 -4.584 12
80I C08 C 4.299 -5.334 13
80I C09 C 3.000 -4.584 14
80I C11 C 4.299 -2.334 15
80I C16 C 12.393 -1.236 16
80I C18 C 12.393 1.362 17
80I C19 C 13.893 1.362 18
80I C23 C 15.147 5.035 19
80I C27 C 10.143 2.661 20
80I C35 C 12.393 -3.834 21
80I C36 C 13.893 -3.834 22
80I C37 C 14.643 -2.535 23
80I C38 C 14.643 -5.133 24
80I N04 N 7.018 -5.041 25
80I N14 N 10.143 -2.535 26
80I N17 N 11.643 0.063 27
80I N22 N 16.446 4.285 28
80I O01 O 10.143 -5.133 29
80I O12 O 4.299 -0.834 30
80I O25 O 17.138 1.703 31
80I O28 O 9.393 3.960 32
80I O30 O 7.893 2.460 33
80I O31 O 6.393 3.960 34
80I O32 O 7.893 5.460 35
80I O33 O 12.393 3.960 36
80I O34 O 13.893 -1.236 37
80I P29 P 7.893 3.960 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
80I N22 C23 SINGLE NONE 1
80I N22 C21 SINGLE NONE 2
80I C23 C24 SINGLE NONE 3
80I C21 O25 DOUBLE NONE 4
80I C21 C20 SINGLE NONE 5
80I C24 C20 SINGLE NONE 6
80I C20 C19 SINGLE BEGINDASH 7
80I C08 C09 SINGLE NONE 8
80I C08 C07 DOUBLE NONE 9
80I C09 C10 DOUBLE NONE 10
80I C18 C19 SINGLE BEGINDASH 11
80I C07 N04 SINGLE NONE 12
80I C07 C06 SINGLE NONE 13
80I C10 C11 SINGLE NONE 14
80I N04 C03 SINGLE NONE 15
80I O31 P29 DOUBLE NONE 16
80I C18 C26 SINGLE NONE 17
80I C18 N17 SINGLE NONE 18
80I O32 P29 SINGLE NONE 19
80I C06 C11 DOUBLE NONE 20
80I C06 C05 SINGLE NONE 21
80I C11 O12 SINGLE NONE 22
80I O33 C26 DOUBLE NONE 23
80I O01 C02 DOUBLE NONE 24
80I C03 C02 SINGLE NONE 25
80I C03 C05 DOUBLE NONE 26
80I C26 C27 SINGLE NONE 27
80I C02 N14 SINGLE NONE 28
80I P29 O28 SINGLE NONE 29
80I P29 O30 SINGLE NONE 30
80I O34 C16 DOUBLE NONE 31
80I N17 C16 SINGLE NONE 32
80I O12 C13 SINGLE NONE 33
80I C16 C15 SINGLE NONE 34
80I O28 C27 SINGLE NONE 35
80I N14 C15 SINGLE NONE 36
80I C15 C35 SINGLE BEGINDASH 37
80I C35 C36 SINGLE NONE 38
80I C36 C38 SINGLE NONE 39
80I C36 C37 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
80I MurckoScaffold S1 scaffold 'O=C(CNC(=O)c1cc2ccccc2[nH]1)NCC[C@@H]1CCNC1=O' InChI=1S/C17H20N4O3/c22-15(18-7-5-11-6-8-19-16(11)23)10-20-17(24)14-9-12-3-1-2-4-13(12)21-14/h1-4,9,11,21H,5-8,10H2,(H,18,22)(H,19,23)(H,20,24)/t11-/m1/s1 PKFNNRVTCDIUOS-LLVKDONJSA-N
80I amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
80I indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
80I peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
80I phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
80I phosphate F5 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
80I pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
80I Z1429867185 F7 fragment 'COc1cccc2[nH]ccc12' InChI=1S/C9H9NO/c1-11-9-4-2-3-8-7(9)5-6-10-8/h2-6,10H,1H3 LUNOXNMCFPFPMO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
80I C10 S1 1
80I C15 S1 1
80I C20 S1 1
80I C21 S1 1
80I C24 S1 1
80I C02 S1 1
80I C03 S1 1
80I C05 S1 1
80I C06 S1 1
80I C07 S1 1
80I C08 S1 1
80I C09 S1 1
80I C11 S1 1
80I C16 S1 1
80I C18 S1 1
80I C19 S1 1
80I C23 S1 1
80I N04 S1 1
80I N14 S1 1
80I N17 S1 1
80I N22 S1 1
80I O01 S1 1
80I O25 S1 1
80I O34 S1 1
80I N14 F1 1
80I C02 F1 1
80I O01 F1 1
80I C03 F1 1
80I N17 F1 2
80I C16 F1 2
80I O34 F1 2
80I C15 F1 2
80I N22 F1 3
80I C21 F1 3
80I O25 F1 3
80I C20 F1 3
80I C07 F2 1
80I C06 F2 1
80I C05 F2 1
80I C03 F2 1
80I N04 F2 1
80I C11 F2 1
80I C10 F2 1
80I C09 F2 1
80I C08 F2 1
80I O33 F3 1
80I C26 F3 1
80I C18 F3 1
80I N17 F3 1
80I O34 F3 2
80I C16 F3 2
80I C15 F3 2
80I N14 F3 2
80I C10 F4 1
80I C09 F4 1
80I C08 F4 1
80I C07 F4 1
80I C06 F4 1
80I C11 F4 1
80I O28 F5 1
80I P29 F5 1
80I O31 F5 1
80I O32 F5 1
80I O30 F5 1
80I C03 F6 1
80I C05 F6 1
80I C06 F6 1
80I C07 F6 1
80I N04 F6 1
80I C13 F7 1
80I O12 F7 1
80I C11 F7 1
80I C10 F7 1
80I C09 F7 1
80I C08 F7 1
80I C07 F7 1
80I N04 F7 1
80I C03 F7 1
80I C05 F7 1
80I C06 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 80I
_pdbe_chem_comp_rdkit_properties.exactmw 552.199
_pdbe_chem_comp_rdkit_properties.amw 552.521
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 265.586
_pdbe_chem_comp_rdkit_properties.tpsa 196.150
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.065
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.145
_pdbe_chem_comp_rdkit_properties.chi0v 18.805
_pdbe_chem_comp_rdkit_properties.chi1v 10.659
_pdbe_chem_comp_rdkit_properties.chi2v 4.041
_pdbe_chem_comp_rdkit_properties.chi3v 4.041
_pdbe_chem_comp_rdkit_properties.chi4v 2.495
_pdbe_chem_comp_rdkit_properties.chi0n 50.910
_pdbe_chem_comp_rdkit_properties.chi1n 25.303
_pdbe_chem_comp_rdkit_properties.chi2n 3.726
_pdbe_chem_comp_rdkit_properties.chi3n 3.726
_pdbe_chem_comp_rdkit_properties.chi4n 2.300
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.250
_pdbe_chem_comp_rdkit_properties.kappa1 8.136
_pdbe_chem_comp_rdkit_properties.kappa2 12.530
_pdbe_chem_comp_rdkit_properties.kappa3 7.874
_pdbe_chem_comp_rdkit_properties.Phi 2.683
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
80I UniChem ChEMBL CHEMBL4802214
80I UniChem ChEBI CHEBI:758525
80I UniChem ChEBI CHEBI:173073
80I UniChem MolPort Molport-047-950-077
80I UniChem ClinicalTrials NCT04501978
80I UniChem ClinicalTrials NCT04535167
80I UniChem ClinicalTrials NCT04627532
80I UniChem ClinicalTrials NCT05050682
80I UniChem ClinicalTrials NCT05780541
80I UniChem SureChEMBL 24208597
80I UniChem SureChEMBL 29387262
80I UniChem 'EPA CompTox Dashboard' DTXSID501337108
80I UniChem fdasrs XJ51YOB1SC
80I UniChem BindingDb 510049
80I UniChem PubChem 154699467
80I UniChem 'Probes And Drugs' PD133880
80I UniChem DrugBank DB16514
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
80I C10 6.202 -1.840 -2.726 ETKDGv3 1
80I C13 6.262 -4.714 -1.848 ETKDGv3 2
80I C15 -0.046 1.076 1.977 ETKDGv3 3
80I C20 -1.360 -1.175 -2.818 ETKDGv3 4
80I C21 0.031 -1.061 -2.309 ETKDGv3 5
80I C24 -1.275 -2.450 -3.688 ETKDGv3 6
80I C26 -3.878 -0.086 -0.067 ETKDGv3 7
80I C02 1.884 -0.410 1.292 ETKDGv3 8
80I C03 2.987 -0.588 0.327 ETKDGv3 9
80I C05 3.598 -1.763 0.100 ETKDGv3 10
80I C06 4.556 -1.558 -0.978 ETKDGv3 11
80I C07 4.443 -0.173 -1.347 ETKDGv3 12
80I C08 5.150 0.358 -2.345 ETKDGv3 13
80I C09 6.092 -0.537 -3.069 ETKDGv3 14
80I C11 5.375 -2.402 -1.610 ETKDGv3 15
80I C16 -0.911 1.114 0.744 ETKDGv3 16
80I C18 -2.541 -0.107 -0.773 ETKDGv3 17
80I C19 -2.404 -1.346 -1.689 ETKDGv3 18
80I C23 0.017 -3.184 -3.283 ETKDGv3 19
80I C27 -4.607 1.206 0.169 ETKDGv3 20
80I C35 -0.183 2.353 2.839 ETKDGv3 21
80I C36 -1.630 2.657 3.305 ETKDGv3 22
80I C37 -2.202 1.546 4.198 ETKDGv3 23
80I C38 -1.668 3.997 4.051 ETKDGv3 24
80I N04 3.468 0.457 -0.536 ETKDGv3 25
80I N14 1.346 0.894 1.563 ETKDGv3 26
80I N17 -1.490 -0.100 0.246 ETKDGv3 27
80I N22 0.804 -2.215 -2.549 ETKDGv3 28
80I O01 1.399 -1.420 1.871 ETKDGv3 29
80I O12 5.426 -3.747 -1.224 ETKDGv3 30
80I O25 0.515 -0.017 -1.798 ETKDGv3 31
80I O28 -4.638 1.457 1.554 ETKDGv3 32
80I O30 -6.945 2.961 1.125 ETKDGv3 33
80I O31 -4.572 4.072 1.210 ETKDGv3 34
80I O32 -5.535 3.223 3.481 ETKDGv3 35
80I O33 -4.345 -1.121 0.386 ETKDGv3 36
80I O34 -1.057 2.194 0.109 ETKDGv3 37
80I P29 -5.399 2.960 1.816 ETKDGv3 38
80I H1 6.892 -2.471 -3.270 ETKDGv3 39
80I H2 5.999 -4.809 -2.923 ETKDGv3 40
80I H3 7.328 -4.423 -1.741 ETKDGv3 41
80I H4 6.110 -5.697 -1.356 ETKDGv3 42
80I H5 -0.350 0.214 2.608 ETKDGv3 43
80I H6 -1.614 -0.295 -3.450 ETKDGv3 44
80I H7 -1.204 -2.155 -4.759 ETKDGv3 45
80I H8 -2.160 -3.115 -3.573 ETKDGv3 46
80I H9 3.386 -2.700 0.600 ETKDGv3 47
80I H10 5.041 1.399 -2.620 ETKDGv3 48
80I H11 6.689 -0.139 -3.879 ETKDGv3 49
80I H12 -2.458 0.798 -1.414 ETKDGv3 50
80I H13 -3.386 -1.530 -2.180 ETKDGv3 51
80I H14 -2.169 -2.249 -1.082 ETKDGv3 52
80I H15 -0.216 -4.045 -2.621 ETKDGv3 53
80I H16 -4.086 2.029 -0.371 ETKDGv3 54
80I H17 -5.638 1.100 -0.237 ETKDGv3 55
80I H18 0.474 2.250 3.731 ETKDGv3 56
80I H19 0.196 3.221 2.255 ETKDGv3 57
80I H20 -2.287 2.760 2.416 ETKDGv3 58
80I H21 -2.368 0.620 3.609 ETKDGv3 59
80I H22 -1.514 1.327 5.042 ETKDGv3 60
80I H23 -3.187 1.850 4.610 ETKDGv3 61
80I H24 -1.039 3.954 4.967 ETKDGv3 62
80I H25 -2.711 4.246 4.342 ETKDGv3 63
80I H26 -1.294 4.812 3.396 ETKDGv3 64
80I H27 3.107 1.430 -0.638 ETKDGv3 65
80I H28 1.881 1.736 1.254 ETKDGv3 66
80I H29 -1.296 -0.988 0.763 ETKDGv3 67
80I H30 -7.339 3.831 1.388 ETKDGv3 68
80I H31 -6.012 2.424 3.823 ETKDGv3 69
80I H32 1.783 -2.363 -2.218 ETKDGv3 70
80I H33 0.575 -3.534 -4.177 ETKDGv3 71
#