data_7R3
#
_chem_comp.id 7R3
_chem_comp.name
(2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 Cl O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Empagliflozin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-14
_chem_comp.pdbx_modified_date 2021-10-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 450.909
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7R3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FEN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7R3 C10 C1 C 0 1 N N R N N N 37.651 47.348 43.225 -4.407 0.397 0.910 C10 7R3 1
7R3 C13 C2 C 0 1 N N R N N N 40.496 47.623 42.829 -4.460 -2.111 -0.517 C13 7R3 2
7R3 C15 C3 C 0 1 N N N N N N 41.264 48.815 43.359 -4.753 -2.893 -1.799 C15 7R3 3
7R3 C17 C4 C 0 1 Y N N N N N 39.126 46.618 46.761 -2.298 1.423 -1.270 C17 7R3 4
7R3 C20 C5 C 0 1 N N N N N N 35.636 49.519 47.531 1.000 2.327 1.292 C20 7R3 5
7R3 C21 C6 C 0 1 Y N N N N N 38.829 47.095 48.196 -1.376 2.382 -1.645 C21 7R3 6
7R3 C22 C7 C 0 1 Y N N N N N 37.668 48.060 48.441 -0.307 2.674 -0.816 C22 7R3 7
7R3 C24 C8 C 0 1 N N N N N N 40.013 55.510 50.131 6.444 -1.753 1.295 C24 7R3 8
7R3 C26 C9 C 0 1 Y N N N N N 36.160 50.911 48.024 2.231 1.607 0.805 C26 7R3 9
7R3 C28 C10 C 0 1 Y N N N N N 37.060 51.742 47.117 2.514 0.335 1.268 C28 7R3 10
7R3 C09 C11 C 0 1 N N R N N N 38.226 47.260 41.896 -5.447 -0.670 1.265 C09 7R3 11
7R3 C11 C12 C 0 1 N N S N N N 39.411 48.142 41.884 -5.758 -1.500 0.017 C11 7R3 12
7R3 C12 C13 C 0 1 N N S N N N 38.576 46.629 44.202 -3.160 -0.287 0.342 C12 7R3 13
7R3 C14 C14 C 0 1 Y N N N N N 38.268 47.106 45.599 -2.155 0.759 -0.066 C14 7R3 14
7R3 C16 C15 C 0 1 Y N N N N N 37.128 48.057 45.836 -1.090 1.055 0.765 C16 7R3 15
7R3 C18 C16 C 0 1 Y N N N N N 36.822 48.540 47.275 -0.161 2.006 0.386 C18 7R3 16
7R3 C19 C17 C 0 1 N N S N N N 39.043 55.091 48.937 5.776 -1.716 -0.093 C19 7R3 17
7R3 C23 C18 C 0 1 N N N N N N 39.075 56.039 48.110 6.774 -2.456 -1.015 C23 7R3 18
7R3 C25 C19 C 0 1 N N N N N N 39.865 57.304 48.824 7.601 -3.286 0.001 C25 7R3 19
7R3 C27 C20 C 0 1 Y N N N N N 37.170 53.658 49.028 4.490 0.284 -0.088 C27 7R3 20
7R3 C29 C21 C 0 1 Y N N N N N 35.745 51.443 49.444 3.072 2.217 -0.107 C29 7R3 21
7R3 C30 C22 C 0 1 Y N N N N N 37.580 53.137 47.616 3.642 -0.327 0.823 C30 7R3 22
7R3 C31 C23 C 0 1 Y N N N N N 36.261 52.828 49.943 4.200 1.558 -0.555 C31 7R3 23
7R3 O2 O1 O 0 1 N N N N N N 40.040 46.813 43.962 -3.525 -1.067 -0.799 O2 7R3 24
7R3 O3 O2 O 0 1 N N N N N N 37.253 47.677 40.848 -6.641 -0.037 1.730 O3 7R3 25
7R3 O4 O3 O 0 1 N N N N N N 36.335 46.714 43.254 -4.055 1.131 2.084 O4 7R3 26
7R3 O5 O4 O 0 1 N N N N N N 39.957 48.189 40.565 -6.674 -2.545 0.353 O5 7R3 27
7R3 O6 O5 O 0 1 N N N N N N 42.301 48.350 44.229 -3.565 -3.557 -2.234 O6 7R3 28
7R3 O7 O6 O 0 1 N N N N N N 39.943 57.019 50.103 7.715 -2.408 1.143 O7 7R3 29
7R3 O8 O7 O 0 1 N N N N N N 37.659 54.937 49.464 5.600 -0.366 -0.527 O8 7R3 30
7R3 CL1 CL1 CL 0 0 N N N N N N 37.304 48.621 50.088 0.852 3.878 -1.286 CL1 7R3 31
7R3 H1 H1 H 0 1 N N N N N N 37.563 48.402 43.527 -4.821 1.077 0.165 H1 7R3 32
7R3 H2 H2 H 0 1 N N N N N N 41.192 47.017 42.231 -4.040 -2.783 0.231 H2 7R3 33
7R3 H3 H3 H 0 1 N N N N N N 41.708 49.371 42.520 -5.531 -3.631 -1.605 H3 7R3 34
7R3 H4 H4 H 0 1 N N N N N N 40.583 49.475 43.916 -5.090 -2.205 -2.575 H4 7R3 35
7R3 H5 H5 H 0 1 N N N N N N 39.944 45.937 46.578 -3.132 1.195 -1.917 H5 7R3 36
7R3 H6 H6 H 0 1 N N N N N N 35.073 49.656 46.596 0.768 2.006 2.307 H6 7R3 37
7R3 H7 H7 H 0 1 N N N N N N 34.974 49.091 48.298 1.180 3.402 1.283 H7 7R3 38
7R3 H8 H8 H 0 1 N N N N N N 39.435 46.751 49.021 -1.490 2.903 -2.584 H8 7R3 39
7R3 H9 H9 H 0 1 N N N N N N 39.653 55.114 51.092 6.592 -0.738 1.663 H9 7R3 40
7R3 H10 H10 H 0 1 N N N N N N 41.039 55.157 49.951 5.820 -2.312 1.992 H10 7R3 41
7R3 H11 H11 H 0 1 N N N N N N 37.338 51.375 46.140 1.853 -0.141 1.977 H11 7R3 42
7R3 H12 H12 H 0 1 N N N N N N 38.543 46.225 41.700 -5.051 -1.319 2.046 H12 7R3 43
7R3 H13 H13 H 0 1 N N N N N N 39.117 49.152 42.206 -6.200 -0.859 -0.746 H13 7R3 44
7R3 H14 H14 H 0 1 N N N N N N 38.351 45.553 44.151 -2.723 -0.935 1.101 H14 7R3 45
7R3 H15 H15 H 0 1 N N N N N N 36.526 48.401 45.008 -0.980 0.536 1.706 H15 7R3 46
7R3 H16 H16 H 0 1 N N N N N N 39.393 54.134 48.524 4.818 -2.236 -0.069 H16 7R3 47
7R3 H17 H17 H 0 1 N N N N N N 38.051 56.339 47.845 6.251 -3.107 -1.714 H17 7R3 48
7R3 H18 H18 H 0 1 N N N N N N 39.612 55.726 47.202 7.410 -1.748 -1.546 H18 7R3 49
7R3 H19 H19 H 0 1 N N N N N N 40.873 57.413 48.397 7.070 -4.199 0.272 H19 7R3 50
7R3 H20 H20 H 0 1 N N N N N N 39.301 58.237 48.676 8.585 -3.519 -0.405 H20 7R3 51
7R3 H21 H21 H 0 1 N N N N N N 35.101 50.848 50.075 2.846 3.208 -0.470 H21 7R3 52
7R3 H22 H22 H 0 1 N N N N N N 38.220 53.734 46.983 3.863 -1.321 1.186 H22 7R3 53
7R3 H23 H23 H 0 1 N N N N N N 35.982 53.197 50.919 4.860 2.036 -1.265 H23 7R3 54
7R3 H24 H24 H 0 1 N N N N N N 36.498 47.101 40.869 -7.344 -0.654 1.974 H24 7R3 55
7R3 H25 H25 H 0 1 N N N N N N 35.971 46.779 44.129 -4.798 1.591 2.498 H25 7R3 56
7R3 H26 H26 H 0 1 N N N N N N 40.719 48.756 40.557 -7.518 -2.230 0.704 H26 7R3 57
7R3 H27 H27 H 0 1 N N N N N N 42.788 49.092 44.566 -3.677 -4.074 -3.044 H27 7R3 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7R3 O5 C11 SING N N 1
7R3 O3 C09 SING N N 2
7R3 C11 C09 SING N N 3
7R3 C11 C13 SING N N 4
7R3 C09 C10 SING N N 5
7R3 C13 C15 SING N N 6
7R3 C13 O2 SING N N 7
7R3 C10 O4 SING N N 8
7R3 C10 C12 SING N N 9
7R3 C15 O6 SING N N 10
7R3 O2 C12 SING N N 11
7R3 C12 C14 SING N N 12
7R3 C14 C16 DOUB Y N 13
7R3 C14 C17 SING Y N 14
7R3 C16 C18 SING Y N 15
7R3 C17 C21 DOUB Y N 16
7R3 C28 C30 DOUB Y N 17
7R3 C28 C26 SING Y N 18
7R3 C18 C20 SING N N 19
7R3 C18 C22 DOUB Y N 20
7R3 C20 C26 SING N N 21
7R3 C30 C27 SING Y N 22
7R3 C26 C29 DOUB Y N 23
7R3 C23 C25 SING N N 24
7R3 C23 C19 SING N N 25
7R3 C21 C22 SING Y N 26
7R3 C22 CL1 SING N N 27
7R3 C25 O7 SING N N 28
7R3 C19 O8 SING N N 29
7R3 C19 C24 SING N N 30
7R3 C27 O8 SING N N 31
7R3 C27 C31 DOUB Y N 32
7R3 C29 C31 SING Y N 33
7R3 O7 C24 SING N N 34
7R3 C10 H1 SING N N 35
7R3 C13 H2 SING N N 36
7R3 C15 H3 SING N N 37
7R3 C15 H4 SING N N 38
7R3 C17 H5 SING N N 39
7R3 C20 H6 SING N N 40
7R3 C20 H7 SING N N 41
7R3 C21 H8 SING N N 42
7R3 C24 H9 SING N N 43
7R3 C24 H10 SING N N 44
7R3 C28 H11 SING N N 45
7R3 C09 H12 SING N N 46
7R3 C11 H13 SING N N 47
7R3 C12 H14 SING N N 48
7R3 C16 H15 SING N N 49
7R3 C19 H16 SING N N 50
7R3 C23 H17 SING N N 51
7R3 C23 H18 SING N N 52
7R3 C25 H19 SING N N 53
7R3 C25 H20 SING N N 54
7R3 C29 H21 SING N N 55
7R3 C30 H22 SING N N 56
7R3 C31 H23 SING N N 57
7R3 O3 H24 SING N N 58
7R3 O4 H25 SING N N 59
7R3 O5 H26 SING N N 60
7R3 O6 H27 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7R3 InChI InChI 1.03 InChI=1S/C23H27ClO7/c24-18-6-3-14(23-22(28)21(27)20(26)19(11-25)31-23)10-15(18)9-13-1-4-16(5-2-13)30-17-7-8-29-12-17/h1-6,10,17,19-23,25-28H,7-9,11-12H2/t17-,19+,20+,21-,22+,23-/m0/s1
7R3 InChIKey InChI 1.03 OBWASQILIWPZMG-QZMOQZSNSA-N
7R3 SMILES_CANONICAL CACTVS 3.385 OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2ccc(Cl)c(Cc3ccc(O[C@H]4CCOC4)cc3)c2
7R3 SMILES CACTVS 3.385 OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2ccc(Cl)c(Cc3ccc(O[CH]4CCOC4)cc3)c2
7R3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cc2cc(ccc2Cl)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O[C@H]4CCOC4
7R3 SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1Cc2cc(ccc2Cl)C3C(C(C(C(O3)CO)O)O)O)OC4CCOC4
#
_pdbx_chem_comp_identifier.comp_id 7R3
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{S},3~{R},4~{R},5~{S},6~{R})-2-[4-chloranyl-3-[[4-[(3~{S})-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 7R3
_pdbx_chem_comp_synonyms.name Empagliflozin
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7R3 'Create component' 2021-10-14 PDBJ
7R3 'Initial release' 2021-10-27 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 7R3
_pdbe_chem_comp_drugbank_details.drugbank_id DB09038
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Empagliflozin
_pdbe_chem_comp_drugbank_details.description
'Empagliflozin is an inhibitor of sodium-glucose co-transporter-2 (SGLT2), the transporters primarily responsible for the reabsorption of glucose in the kidney.[A203453] It is used clinically as an adjunct to diet and exercise, often in combination with other drug therapies,[L13673,L13679,L11479] for the management of type 2 diabetes mellitus.[L13688] The first known inhibitor of SGLTs, phlorizin, was isolated from the bark of apple trees in 1835 and researched extensively into the 20th century, but was ultimately deemed inappropriate for clinical use given its lack of specificity and significant gastrointestinal side effects.[A203501] Attempts at overcoming these limitations first saw the development of O-glucoside analogs of phlorizin (e.g. [remogliflozin etabonate]), but these molecules proved relatively pharmacokinetically unstable. The development of C-glucoside phlorizin analogs remedied the issues observed in the previous generation, and led to the FDA approval of [canagliflozin] in 2013 and both [dapagliflozin] and empagliflozin in 2014.[A203501] As the most recently approved of the "flozin" drugs, empagliflozin carries the highest selectivity for SGLT2 over SGLT1 (approximately 2700-fold). Empagliflozin was further approved by the EMA in March 2022 and Health Canada in April 2022, making it the first and only approved treatment in Europe and Canada for adults with symptomatic chronic heart failure regardless of ejection fraction.[L40783,L13916]'
_pdbe_chem_comp_drugbank_details.cas_number 864070-44-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The vast majority of glucose filtered through the glomerulus is reabsorbed within the proximal tubule, primarily via SGLT2 (sodium-glucose linked co-transporter-2) which is responsible for ~90% of the total glucose reabsorption within the kidneys. Na+/K+-ATPase on the basolateral membrane of proximal tubular cells utilize ATP to actively pump Na+ ions into the interstitium surrounding the tubule, establishing a Na+ gradient within the tubular cell. SGLT2 on the apical membrane of these cells then utilize this gradient to facilitate secondary active co-transport of both Na+ and glucose out of the filtrate, thereby reabsorbing glucose back into the blood – inhibiting this co-transport, then, allows for a marked increase in glucosuria and decrease in blood glucose levels.[A203453] Empagliflozin is a potent inhibitor of renal SGLT2 transporters located in the proximal tubules of the kidneys and works to lower blood glucose levels via an increase in glucosuria.[L13688] Empagliflozin also appears to exert cardiovascular benefits - specifically in the prevention of heart failure - independent of its blood glucose-lowering effects, though the exact mechanism of this benefit is not precisely understood. Several theories have been posited, including the potential inhibition of Na+/H+ exchanger (NHE) 1 in the myocardium and NHE3 in the proximal tubule, reduction of pre-load via diuretic/natriuretic effects and reduction of blood pressure, prevention of cardiac fibrosis via suppression of pro-fibrotic markers, and reduction of pro-inflammatory adipokines.[A203456]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
7R3 Empagliflozin wwPDB ?
7R3 '(1S)-1,5-anhydro-1-(4-chloro-3-{4-[(3S)-tetrahydrofuran-3-yloxy]benzyl}phenyl)-D-glucitol' DrugBank ?
7R3 1-chloro-4-(glucopyranos-1-yl)-2-(4-(tetrahydrofuran-3-yloxy)benzyl)benzene DrugBank ?
7R3 Empagliflozin DrugBank ?
7R3 Empagliflozinum DrugBank ?
7R3 Jardiance DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id 7R3
_pdbe_chem_comp_drugbank_classification.drugbank_id DB09038
_pdbe_chem_comp_drugbank_classification.parent 'Phenolic glycosides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 7R3
_pdbe_chem_comp_drugbank_targets.drugbank_id DB09038
_pdbe_chem_comp_drugbank_targets.name 'Sodium/glucose cotransporter 2'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P31639
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7R3 C10 C 7.972 4.794 1
7R3 C13 C 10.570 6.294 2
7R3 C15 C 11.869 7.044 3
7R3 C17 C 10.570 1.794 4
7R3 C20 C 6.673 -0.456 5
7R3 C21 C 10.570 0.294 6
7R3 C22 C 9.271 -0.456 7
7R3 C24 C 4.004 -6.596 8
7R3 C26 C 6.673 -1.956 9
7R3 C28 C 7.972 -2.706 10
7R3 C09 C 7.972 6.294 11
7R3 C11 C 9.271 7.044 12
7R3 C12 C 9.271 4.044 13
7R3 C14 C 9.271 2.544 14
7R3 C16 C 7.972 1.794 15
7R3 C18 C 7.972 0.294 16
7R3 C19 C 5.374 -7.206 17
7R3 C23 C 5.217 -8.697 18
7R3 C25 C 3.750 -9.009 19
7R3 C27 C 6.673 -4.956 20
7R3 C29 C 5.374 -2.706 21
7R3 C30 C 7.972 -4.206 22
7R3 C31 C 5.374 -4.206 23
7R3 O2 O 10.570 4.794 24
7R3 O3 O 6.673 7.044 25
7R3 O4 O 6.673 4.044 26
7R3 O5 O 9.271 8.544 27
7R3 O6 O 13.168 6.294 28
7R3 O7 O 3.000 -7.710 29
7R3 O8 O 6.673 -6.456 30
7R3 CL1 Cl 9.271 -1.956 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7R3 C11 O5 SINGLE BEGINDASH 1
7R3 C09 O3 SINGLE BEGINWEDGE 2
7R3 C11 C09 SINGLE NONE 3
7R3 C11 C13 SINGLE NONE 4
7R3 C09 C10 SINGLE NONE 5
7R3 C13 C15 SINGLE BEGINWEDGE 6
7R3 C13 O2 SINGLE NONE 7
7R3 C10 O4 SINGLE BEGINDASH 8
7R3 C10 C12 SINGLE NONE 9
7R3 C15 O6 SINGLE NONE 10
7R3 O2 C12 SINGLE NONE 11
7R3 C12 C14 SINGLE BEGINWEDGE 12
7R3 C14 C16 SINGLE NONE 13
7R3 C14 C17 DOUBLE NONE 14
7R3 C16 C18 DOUBLE NONE 15
7R3 C17 C21 SINGLE NONE 16
7R3 C28 C30 DOUBLE NONE 17
7R3 C28 C26 SINGLE NONE 18
7R3 C18 C20 SINGLE NONE 19
7R3 C18 C22 SINGLE NONE 20
7R3 C20 C26 SINGLE NONE 21
7R3 C30 C27 SINGLE NONE 22
7R3 C26 C29 DOUBLE NONE 23
7R3 C23 C25 SINGLE NONE 24
7R3 C23 C19 SINGLE NONE 25
7R3 C21 C22 DOUBLE NONE 26
7R3 C22 CL1 SINGLE NONE 27
7R3 C25 O7 SINGLE NONE 28
7R3 C19 O8 SINGLE BEGINWEDGE 29
7R3 C19 C24 SINGLE NONE 30
7R3 C27 O8 SINGLE NONE 31
7R3 C27 C31 DOUBLE NONE 32
7R3 C29 C31 SINGLE NONE 33
7R3 O7 C24 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7R3 MurckoScaffold S1 scaffold 'c1cc(Cc2ccc(O[C@H]3CCOC3)cc2)cc([C@H]2CCCCO2)c1' InChI=1S/C22H26O3/c1-2-12-24-22(6-1)19-5-3-4-18(15-19)14-17-7-9-20(10-8-17)25-21-11-13-23-16-21/h3-5,7-10,15,21-22H,1-2,6,11-14,16H2/t21-,22+/m0/s1 ABDCRDSLJBFQRB-FCHUYYIVSA-N
7R3 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
7R3 Z104479788 F2 fragment CC(O)c1ccc(Cl)cc1 InChI=1S/C8H9ClO/c1-6(10)7-2-4-8(9)5-3-7/h2-6,10H,1H3 MVOSNPUNXINWAD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7R3 C10 S1 1
7R3 C13 S1 1
7R3 C17 S1 1
7R3 C20 S1 1
7R3 C21 S1 1
7R3 C22 S1 1
7R3 C24 S1 1
7R3 C26 S1 1
7R3 C28 S1 1
7R3 C09 S1 1
7R3 C11 S1 1
7R3 C12 S1 1
7R3 C14 S1 1
7R3 C16 S1 1
7R3 C18 S1 1
7R3 C19 S1 1
7R3 C23 S1 1
7R3 C25 S1 1
7R3 C27 S1 1
7R3 C29 S1 1
7R3 C30 S1 1
7R3 C31 S1 1
7R3 O2 S1 1
7R3 O7 S1 1
7R3 O8 S1 1
7R3 C17 F1 1
7R3 C14 F1 1
7R3 C16 F1 1
7R3 C18 F1 1
7R3 C22 F1 1
7R3 C21 F1 1
7R3 C26 F1 2
7R3 C28 F1 2
7R3 C30 F1 2
7R3 C27 F1 2
7R3 C31 F1 2
7R3 C29 F1 2
7R3 C10 F2 1
7R3 C12 F2 1
7R3 O2 F2 1
7R3 C14 F2 1
7R3 C16 F2 1
7R3 C18 F2 1
7R3 C22 F2 1
7R3 CL1 F2 1
7R3 C21 F2 1
7R3 C17 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7R3
_pdbe_chem_comp_rdkit_properties.exactmw 450.145
_pdbe_chem_comp_rdkit_properties.amw 450.915
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.478
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 223.593
_pdbe_chem_comp_rdkit_properties.tpsa 108.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.987
_pdbe_chem_comp_rdkit_properties.CrippenMR 111.864
_pdbe_chem_comp_rdkit_properties.chi0v 15.492
_pdbe_chem_comp_rdkit_properties.chi1v 8.358
_pdbe_chem_comp_rdkit_properties.chi2v 3.815
_pdbe_chem_comp_rdkit_properties.chi3v 3.815
_pdbe_chem_comp_rdkit_properties.chi4v 2.325
_pdbe_chem_comp_rdkit_properties.chi0n 41.736
_pdbe_chem_comp_rdkit_properties.chi1n 21.113
_pdbe_chem_comp_rdkit_properties.chi2n 3.531
_pdbe_chem_comp_rdkit_properties.chi3n 3.531
_pdbe_chem_comp_rdkit_properties.chi4n 2.184
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 6.668
_pdbe_chem_comp_rdkit_properties.kappa2 9.833
_pdbe_chem_comp_rdkit_properties.kappa3 5.039
_pdbe_chem_comp_rdkit_properties.Phi 2.115
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7R3 UniChem DrugBank DB09038
7R3 UniChem 'Guide to Pharmacology' 4754
7R3 UniChem 'PubChem DOTF' 136350032
7R3 UniChem ChEBI 82720
7R3 UniChem ZINC ZINC000036520252
7R3 UniChem fdasrs HDC1R2M35U
7R3 UniChem SureChEMBL SCHEMBL899986
7R3 UniChem PharmGKB PA166163327
7R3 UniChem Selleck empagliflozin-bi10773
7R3 UniChem 'PubChem TPHARMA' 17390987
7R3 UniChem LINCS LSM-45879
7R3 UniChem BindingDb 150162
7R3 UniChem DrugCentral 4830
7R3 UniChem DailyMed EMPAGLIFLOZIN
7R3 UniChem ClinicalTrials BI-10773
7R3 UniChem ClinicalTrials BI10773
7R3 UniChem ClinicalTrials EMPAGLIFLOZIN
7R3 UniChem ClinicalTrials JARDIANCE
7R3 UniChem rxnorm EMPAGLIFLOZIN
7R3 UniChem rxnorm JARDIANCE
7R3 UniChem MedChemExpress HY-15409
7R3 UniChem 'Probes And Drugs' PD009397
7R3 UniChem CCDC NIQBIB
7R3 UniChem Nikkaji J3.260.944I
7R3 UniChem PubChem 11949646
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7R3 C10 -4.472 0.613 -0.227 ETKDGv3 1
7R3 C13 -3.813 -2.141 0.288 ETKDGv3 2
7R3 C15 -3.630 -3.608 -0.121 ETKDGv3 3
7R3 C17 -2.137 0.693 -2.377 ETKDGv3 4
7R3 C20 0.666 3.440 -0.521 ETKDGv3 5
7R3 C21 -1.228 1.491 -3.220 ETKDGv3 6
7R3 C22 -0.364 2.351 -2.665 ETKDGv3 7
7R3 C24 7.250 -0.778 1.516 ETKDGv3 8
7R3 C26 1.961 2.723 -0.243 ETKDGv3 9
7R3 C28 2.058 1.801 0.914 ETKDGv3 10
7R3 C09 -5.424 -0.232 0.630 ETKDGv3 11
7R3 C11 -5.303 -1.719 0.254 ETKDGv3 12
7R3 C12 -3.046 0.019 -0.161 ETKDGv3 13
7R3 C14 -2.101 0.810 -1.038 ETKDGv3 14
7R3 C16 -1.151 1.769 -0.421 ETKDGv3 15
7R3 C18 -0.323 2.509 -1.182 ETKDGv3 16
7R3 C19 5.789 -0.379 1.466 ETKDGv3 17
7R3 C23 5.113 -1.674 1.119 ETKDGv3 18
7R3 C25 6.068 -2.717 1.667 ETKDGv3 19
7R3 C27 4.368 1.302 0.261 ETKDGv3 20
7R3 C29 3.028 2.881 -1.046 ETKDGv3 21
7R3 C30 3.191 1.130 1.155 ETKDGv3 22
7R3 C31 4.279 2.144 -0.778 ETKDGv3 23
7R3 O2 -3.049 -1.333 -0.591 ETKDGv3 24
7R3 O3 -6.742 0.209 0.427 ETKDGv3 25
7R3 O4 -4.473 1.933 0.259 ETKDGv3 26
7R3 O5 -6.045 -2.484 1.170 ETKDGv3 27
7R3 O6 -4.077 -3.811 -1.434 ETKDGv3 28
7R3 O7 7.343 -2.143 1.852 ETKDGv3 29
7R3 O8 5.576 0.619 0.466 ETKDGv3 30
7R3 CL1 0.689 3.283 -3.722 ETKDGv3 31
7R3 H1 -4.838 0.589 -1.282 ETKDGv3 32
7R3 H2 -3.428 -2.050 1.331 ETKDGv3 33
7R3 H3 -2.549 -3.867 -0.054 ETKDGv3 34
7R3 H4 -4.184 -4.273 0.578 ETKDGv3 35
7R3 H5 -2.834 0.016 -2.855 ETKDGv3 36
7R3 H6 0.252 3.826 0.436 ETKDGv3 37
7R3 H7 0.834 4.337 -1.155 ETKDGv3 38
7R3 H8 -1.269 1.374 -4.296 ETKDGv3 39
7R3 H9 7.791 -0.169 2.270 ETKDGv3 40
7R3 H10 7.732 -0.622 0.525 ETKDGv3 41
7R3 H11 1.210 1.669 1.575 ETKDGv3 42
7R3 H12 -5.142 -0.102 1.703 ETKDGv3 43
7R3 H13 -5.702 -1.848 -0.782 ETKDGv3 44
7R3 H14 -2.674 0.078 0.889 ETKDGv3 45
7R3 H15 -1.129 1.867 0.658 ETKDGv3 46
7R3 H16 5.472 -0.017 2.470 ETKDGv3 47
7R3 H17 4.108 -1.757 1.585 ETKDGv3 48
7R3 H18 5.026 -1.786 0.015 ETKDGv3 49
7R3 H19 6.143 -3.579 0.971 ETKDGv3 50
7R3 H20 5.699 -3.087 2.648 ETKDGv3 51
7R3 H21 2.988 3.548 -1.897 ETKDGv3 52
7R3 H22 3.233 0.472 2.010 ETKDGv3 53
7R3 H23 5.127 2.284 -1.438 ETKDGv3 54
7R3 H24 -7.274 -0.103 1.205 ETKDGv3 55
7R3 H25 -4.234 2.523 -0.503 ETKDGv3 56
7R3 H26 -6.427 -3.251 0.670 ETKDGv3 57
7R3 H27 -3.933 -4.773 -1.629 ETKDGv3 58
#